ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y2F9_ENCCU (Q8STG8) Hypothetical protein ECU02_1590/ECU04_0060/E... 31 1.3
2Y105_ENCCU (Q8STH9) Hypothetical protein ECU01_0050/ECU01_1560/E... 31 1.3
3LYG2_HUMAN (Q86SG7) Lysozyme g-like protein 2 precursor 30 1.7
4ADD4_STRCO (Q9L0L6) Probable adenosine deaminase 4 (EC 3.5.4.4) ... 29 4.9
5FMT_ENTFA (Q82ZD8) Methionyl-tRNA formyltransferase (EC 2.1.2.9) 28 8.3
6DDB2_HUMAN (Q92466) DNA damage-binding protein 2 (Damage-specifi... 28 8.3

>Y2F9_ENCCU (Q8STG8) Hypothetical protein ECU02_1590/ECU04_0060/ECU08_2120|
          Length = 207

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 156 PTLQAAKQSTKHTHTHTPNWKS*TPHHESSLDMYNTATNSFTPQTLDSGL 305
           P  +  K  T+  HTH  N +  T H E+      T+T   TP T+ S L
Sbjct: 67  PPKKKKKNHTEGCHTHEANPEPNTKHTETESPKPQTSTQHHTPITIPSSL 116



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>Y105_ENCCU (Q8STH9) Hypothetical protein ECU01_0050/ECU01_1560/ECU07_0010|
          Length = 238

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 156 PTLQAAKQSTKHTHTHTPNWKS*TPHHESSLDMYNTATNSFTPQTLDSGL 305
           P  +  K  T+  HTH  N +  T H E+      T+T   TP T+ S L
Sbjct: 98  PPKKKKKNHTEGCHTHEANPEPNTKHTETESPKPQTSTQHHTPITIPSSL 147



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>LYG2_HUMAN (Q86SG7) Lysozyme g-like protein 2 precursor|
          Length = 212

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 245 LGYVQHSNKFFHSTNPRFRPRLAPACLDDQMLMRSGGGD-DSELVCCC 385
           +G  + S  F HS  P   PRL   C  D M M++ G   D+  V  C
Sbjct: 14  IGTSRGSYPFSHSMKPHLHPRLYHGCYGDIMTMKTSGATCDANSVMNC 61



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>ADD4_STRCO (Q9L0L6) Probable adenosine deaminase 4 (EC 3.5.4.4) (Adenosine|
           aminohydrolase 4)
          Length = 343

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 160 RYKQQSKVPNTHTHTHQTGSLRHPTT 237
           R +  S++P  H H H TGS+R PTT
Sbjct: 3   RVRDVSELPKAHLHLHFTGSMR-PTT 27



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>FMT_ENTFA (Q82ZD8) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
          Length = 313

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +1

Query: 139 YTTIEALRYKQQSKVPNTHTHTHQTGSLRHPTTKAAWICTTQQQILSLHK 288
           +TT +   +K  +  P T T T   G++   + KA WI   +  +L + +
Sbjct: 235 FTTYQGTNWKIWAVTPLTETTTSAPGTIIQRSKKALWIACGEGTVLQIDR 284



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>DDB2_HUMAN (Q92466) DNA damage-binding protein 2 (Damage-specific DNA-binding|
           protein 2) (DDB p48 subunit) (DDBb) (UV-damaged
           DNA-binding protein 2) (UV-DDB 2)
          Length = 427

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 20/73 (27%)
 Frame = +3

Query: 207 PNWKS*TPHHESSLDMYN------------------TATNSFTP--QTLDSGLGLHPHVW 326
           PN+KS TP+   ++D+++                  ++ N F P   TL S +G H  +W
Sbjct: 359 PNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIW 418

Query: 327 MIRC**DQEEATT 365
                  QEEA T
Sbjct: 419 ------SQEEART 425


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,026,611
Number of Sequences: 219361
Number of extensions: 989615
Number of successful extensions: 2449
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2437
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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