>SPAR_SHISO (P0A1M7) Surface presentation of antigens protein spaR (Spa29|
           protein)
          Length = 256

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
 Frame = +1

Query: 40  SSASTFVTQTTSELSILYVPQQVVLLMQPLMDHVVAWF-----HFILDLTIQLFLHLPTV 204
           S+  TF+T   S+  IL  P  +VLL+  ++  V++ F      F + LTI+  L +  +
Sbjct: 169 SNILTFLTLLASQAVILASPVMIVLLLSEVLLGVLSRFAPQMNAFSVSLTIKSLLAIFII 228

Query: 205 FLC 213
           F+C
Sbjct: 229 FIC 231

>SPAR_SHIFL (P0A1M6) Surface presentation of antigens protein spaR (Spa29|
           protein)
          Length = 256

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
 Frame = +1

Query: 40  SSASTFVTQTTSELSILYVPQQVVLLMQPLMDHVVAWF-----HFILDLTIQLFLHLPTV 204
           S+  TF+T   S+  IL  P  +VLL+  ++  V++ F      F + LTI+  L +  +
Sbjct: 169 SNILTFLTLLASQAVILASPVMIVLLLSEVLLGVLSRFAPQMNAFSVSLTIKSLLAIFII 228

Query: 205 FLC 213
           F+C
Sbjct: 229 FIC 231

>NIFE_METTM (P95297) Nitrogenase iron-molybdenum cofactor biosynthesis protein|
           nifE
          Length = 480

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 37  CSSASTFVTQTTSELSILYVPQQVVLLMQPLMDH 138
           CSS   F   TT++L +  VP+ V+  + P  +H
Sbjct: 8   CSSKENFSADTTADLKVEEVPEAVINTLSPRREH 41

>HUL4_YEAST (P40985) Probable ubiquitin-protein ligase HUL4 (EC 6.3.2.-) (HECT|
           ubiquitin ligase 4)
          Length = 892

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 20/94 (21%)
 Frame = +3

Query: 141 CGMVPLHFGSNYTT-----------VSPP---SNCLSLPTLHCTV*YLQHLMDRIHDSVE 278
           CG VPL F ++ T            V  P   SN  S   + CT+  LQ ++ R HD ++
Sbjct: 87  CG-VPLRFPASITKFRCSACQVTVIVKEPEINSNLESSTHISCTLEGLQMVVRRCHDDLQ 145

Query: 279 QPCQITLVKPER------PIEDCLITSLHDLSIM 362
           +  +  ++  ER      P+   L+   HD+SI+
Sbjct: 146 RLKKTGILDKERKGLIFQPVITYLLDRFHDVSIL 179

>CH25H_PIG (Q4G1G8) Cholesterol 25-hydroxylase (EC 1.14.99.38) (Cholesterol|
           25-monooxygenase)
          Length = 270

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 73  SELSILYVPQQVVLLMQPLMDHVVAWFHFILDLTIQLFLHLPTVF-LCLRCIAL 231
           SEL +L    Q  L +QPL DH+  W   IL     +F  + T    CL  + L
Sbjct: 7   SELFVLCSSSQ--LFLQPLWDHLKTWETLILSPFFPVFFSITTYLGFCLPFVVL 58

>TDRD7_HUMAN (Q8NHU6) Tudor domain-containing protein 7 (Tudor repeat associator|
           with PCTAIRE 2) (Trap)
          Length = 1098

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -1

Query: 273 RNRESCPSDVVNITQCNAT*AEKDSWKVEKQLYS*IQNEVEPCH 142
           +N +  P   VN+ Q  A  AE+D+W +  Q+ S  +N+++ C+
Sbjct: 504 KNPKITPVQAVNVGQLLAVNAEEDAW-LRAQVISTEENKIKVCY 546

>FBX44_MOUSE (Q8BK26) F-box only protein 44 (F-box only protein 6a)|
          Length = 255

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 166 DLTIQLFLHLPTVFLCLRCIALCDIY 243
           ++ ++LF+H+P   L LRC  +C ++
Sbjct: 12  NILLELFIHIPARQLLLRCRPVCSLW 37

>YYBM_BACSU (P37491) Hypothetical protein yybM|
          Length = 251

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
 Frame = +1

Query: 16  IFLFSVICSSASTFVTQTTSELSILYVPQQVVLLMQPLMDHVVAWFHFILDLTIQLFLHL 195
           I LFS+IC   S FV    S LS+L+  ++              WF  IL     +FL  
Sbjct: 159 IVLFSIICCIMSGFVGALGSSLSLLFRDKKYAYPAS-----FFIWFVLILKNKSLMFLFQ 213

Query: 196 P------TVFLCLRCIAL 231
           P       V L + C+++
Sbjct: 214 PFTEYGYNVLLPILCLSI 231

>MATK_ALLCA (O19816) Maturase K (Intron maturase)|
          Length = 505

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 124 PLMDHVVAWFHFILDLTIQLFLHLPTVFLCLR 219
           P ++   + FHF+LD+ I   +HL  +F  LR
Sbjct: 133 PFLEDNFSHFHFVLDILIPHPVHLEILFQTLR 164


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,011,244
Number of Sequences: 219361
Number of extensions: 1045019
Number of successful extensions: 2521
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2520
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)