>emb|AL845174.4| Mouse DNA sequence from clone RP23-156P22 on chromosome 2, complete
            sequence
          Length = 216475

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 13   gatatatttttattttctgttatatgt 39
            |||||||||||||||| ||||||||||
Sbjct: 5677 gatatatttttattttatgttatatgt 5651

>gb|AE014851.1| Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete
              sequence
          Length = 251762

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 17     tatttttattttctgttatatgttcc 42
              |||||||||||| |||||||||||||
Sbjct: 121404 tatttttattttgtgttatatgttcc 121379

>gb|AC104675.3| Sus scrofa clone RP44-122H18, complete sequence
          Length = 176345

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 25    ttttctgttatatgttccagtg 46
             ||||||||||||||||||||||
Sbjct: 47152 ttttctgttatatgttccagtg 47131

>gb|AC008486.6|AC008486 Homo sapiens chromosome 5 clone CTC-421B9, complete sequence
          Length = 124124

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 20    ttttattttctgttatatgttc 41
             ||||||||||||||||||||||
Sbjct: 91292 ttttattttctgttatatgttc 91271

>gb|AC068660.3|AC068660 Homo sapiens chromosome 5 clone CTC-349J2, complete sequence
          Length = 172188

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 20    ttttattttctgttatatgttc 41
             ||||||||||||||||||||||
Sbjct: 81790 ttttattttctgttatatgttc 81811

>ref|XM_322377.1| Neurospora crassa OR74A hypothetical protein (NCU00292.1) partial
            mRNA
          Length = 2154

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 266  cgattccgttgagcaaccttg 286
            |||||||||||||||||||||
Sbjct: 1190 cgattccgttgagcaaccttg 1210

>ref|XM_952670.1| Neurospora crassa OR74A hypothetical protein (NCU00292.1) partial
            mRNA
          Length = 2154

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 266  cgattccgttgagcaaccttg 286
            |||||||||||||||||||||
Sbjct: 1190 cgattccgttgagcaaccttg 1210

>gb|AC147098.2| Mus musculus BAC clone RP23-452E7 from chromosome 9, complete sequence
          Length = 199612

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 288   caaataaccctagttaaacct 308
             |||||||||||||||||||||
Sbjct: 67167 caaataaccctagttaaacct 67187

>gb|AC002333.3| Arabidopsis thaliana chromosome 2 clone F18O19 map CIC10F02, complete
            sequence
          Length = 98734

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 20   ttttattttctgttatatgtt 40
            |||||||||||||||||||||
Sbjct: 7524 ttttattttctgttatatgtt 7544

>emb|CR450686.20| Zebrafish DNA sequence from clone DKEY-182G1 in linkage group 19,
              complete sequence
          Length = 171861

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 15     tatatttttattttctgttat 35
              |||||||||||||||||||||
Sbjct: 121666 tatatttttattttctgttat 121686

>gb|AC149635.1| Genomic sequence for broccoli [Brassica oleracea L. (Italica group)]
             BAC clone B19N3, complete sequence
          Length = 96718

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    atatttttattttctgttat 35
             ||||||||||||||||||||
Sbjct: 62424 atatttttattttctgttat 62405

>gb|AC104099.5| Mus musculus BAC clone RP24-372J8 from 3, complete sequence
          Length = 148259

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      taacgatatatttttatttt 28
              ||||||||||||||||||||
Sbjct: 117334 taacgatatatttttatttt 117315

>gb|AC004142.2| Homo sapiens BAC clone CTB-118D7 from 7, complete sequence
          Length = 166126

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    ccttccaactgtctttctct 211
              ||||||||||||||||||||
Sbjct: 136268 ccttccaactgtctttctct 136287

>gb|AC142335.1| Pan troglodytes BAC clone RP43-38M15 from 7, complete sequence
          Length = 181138

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   ccttccaactgtctttctct 211
             ||||||||||||||||||||
Sbjct: 28659 ccttccaactgtctttctct 28678

>emb|AL583853.6| Human DNA sequence from clone RP11-139I17 on chromosome 6 Contains part
             of the LAMA2 gene for laminin, alpha 2 (merosin,
             congenital muscular dystrophy) (LAMM), complete sequence
          Length = 169288

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 305   acctgaaagacctattgaagactg 328
             |||||||||||||| |||||||||
Sbjct: 18601 acctgaaagacctagtgaagactg 18624

>emb|CR354401.17| Zebrafish DNA sequence from clone CH211-101C7 in linkage group 12,
            complete sequence
          Length = 168372

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 17   tatttttattttctgttata 36
            ||||||||||||||||||||
Sbjct: 9183 tatttttattttctgttata 9164

>gb|AC161231.7| Mus musculus chromosome 5, clone RP24-241P24, complete sequence
          Length = 193682

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     ttttattttctgttatatgt 39
              ||||||||||||||||||||
Sbjct: 141419 ttttattttctgttatatgt 141438

>emb|AJ248288.1|CNSPAX06 Pyrococcus abyssi complete genome; segment 6/6
          Length = 265118

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   tagttaaacctgaaagacct 317
             ||||||||||||||||||||
Sbjct: 10589 tagttaaacctgaaagacct 10608

>emb|CR293518.13| Zebrafish DNA sequence from clone CH211-129L10 in linkage group 12,
             complete sequence
          Length = 196374

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    tatttttattttctgttata 36
             ||||||||||||||||||||
Sbjct: 50673 tatttttattttctgttata 50654

>gb|AC148694.1| Macaca mulatta Major Histocompatibility Complex BAC MMU242A19, complete
              sequence
          Length = 208276

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     atatatttttattttctgtt 33
              ||||||||||||||||||||
Sbjct: 113708 atatatttttattttctgtt 113689

>gb|AC148691.1| Macaca mulatta Major Histocompatibility Complex BAC MMU234G08, complete
             sequence
          Length = 200068

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    atatatttttattttctgtt 33
             ||||||||||||||||||||
Sbjct: 18650 atatatttttattttctgtt 18631

>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds
          Length = 3284914

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 14      atatatttttattttctgtt 33
               ||||||||||||||||||||
Sbjct: 1428604 atatatttttattttctgtt 1428623

>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 17      tatttttattttctgttatatgtt 40
               ||||||||||| ||||||||||||
Sbjct: 2117893 tatttttatttgctgttatatgtt 2117870

>emb|BX649349.12| Zebrafish DNA sequence from clone CH211-284F7 in linkage group 4,
             complete sequence
          Length = 65051

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 16    atatttttattttctgttatatgt 39
             ||||||||||||||||| ||||||
Sbjct: 40651 atatttttattttctgtaatatgt 40674

>emb|AM180255.1| Lawsonia intracellularis PHE/MN1-00 plasmid 3
          Length = 194553

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 15    tatatttttattttctgttatatgttcc 42
             ||||||||| |||||| |||||||||||
Sbjct: 58090 tatatttttcttttctattatatgttcc 58063

>emb|CT863711.2| Medicago truncatula chromosome 5 clone mth2-152j13, COMPLETE SEQUENCE
          Length = 108806

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    tatttttattttctgttata 36
             ||||||||||||||||||||
Sbjct: 92057 tatttttattttctgttata 92038

>gb|AC153898.4| Mus musculus 6 BAC RP23-55J19 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 234760

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    tttattttctgttatatgtt 40
             ||||||||||||||||||||
Sbjct: 85378 tttattttctgttatatgtt 85359

>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome
          Length = 1664970

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     atatatttttattttctgtt 33
              ||||||||||||||||||||
Sbjct: 412323 atatatttttattttctgtt 412304

>gb|AC169384.2| Mus musculus chromosome 5, clone RP23-231C16, complete sequence
          Length = 204569

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    ttttattttctgttatatgt 39
             ||||||||||||||||||||
Sbjct: 63060 ttttattttctgttatatgt 63079

>emb|AL805948.9| Mouse DNA sequence from clone RP23-18C13 on chromosome 2, complete
             sequence
          Length = 204871

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 15    tatatttttattttctgtta 34
             ||||||||||||||||||||
Sbjct: 84454 tatatttttattttctgtta 84435


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,517,380
Number of Sequences: 3902068
Number of extensions: 4517380
Number of successful extensions: 104282
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104115
Number of HSP's gapped (non-prelim): 167
length of query: 402
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 380
effective length of database: 17,147,199,772
effective search space: 6515935913360
effective search space used: 6515935913360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)