ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01e04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome... 76 1e-10
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
3dbj|AK073598.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
4gb|AC026124.35| Homo sapiens 12 BAC RP11-305O6 (Roswell Park Can... 42 1.4
5gb|AC091491.3| Homo sapiens chromosome 3 clone RP11-15F1 map 3p,... 42 1.4
6gb|AC012597.24|AC012597 Homo sapiens 12 BAC RP11-47G13 (Roswell ... 42 1.4
7ref|NM_106209.1| Arabidopsis thaliana nucleic acid binding AT1G7... 40 5.4
8gb|BT005709.1| Arabidopsis thaliana clone U50844 putative DNA-bi... 40 5.4
9gb|AC108733.4| Homo sapiens 3 BAC RP11-789F5 (Roswell Park Cance... 40 5.4
10gb|AY085039.1| Arabidopsis thaliana clone 125348 mRNA, complete ... 40 5.4
11gb|AC006434.5|AC006434 Genomic sequence for Arabidopsis thaliana... 40 5.4
12dbj|AK176626.1| Arabidopsis thaliana mRNA for DNA-binding protei... 40 5.4
13dbj|AK176616.1| Arabidopsis thaliana mRNA for DNA-binding protei... 40 5.4
14dbj|AK176516.1| Arabidopsis thaliana mRNA for DNA-binding protei... 40 5.4
15dbj|AK176208.1| Arabidopsis thaliana mRNA for DNA-binding protei... 40 5.4
16dbj|AK175841.1| Arabidopsis thaliana mRNA for DNA-binding protei... 40 5.4
17dbj|AK175304.1| Arabidopsis thaliana mRNA for DNA-binding protei... 40 5.4
18dbj|AK175269.1| Arabidopsis thaliana mRNA for DNA-binding protei... 40 5.4
19dbj|AK175193.1| Arabidopsis thaliana mRNA for DNA-binding protei... 40 5.4
20dbj|AK118306.1| Arabidopsis thaliana At1g75560 mRNA for putative... 40 5.4
21emb|AJ323481.1|HSA323481 Homo sapiens genomic sequence surroundi... 40 5.4
22emb|AL591584.14| Mouse DNA sequence from clone RP23-335N12 on ch... 40 5.4
23dbj|AP000886.3| Homo sapiens genomic DNA, chromosome 6q25.2, clo... 40 5.4 
>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04,
             complete sequence
          Length = 176678

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 41/42 (97%)
 Strand = Plus / Minus

                                                       
Query: 363   ctggacagtctctagaaaagtgcccaggctggttacatttga 404
             ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 83516 ctggacagtctctagaaaagtgcccaggctgtttacatttga 83475



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                        
Query: 362   cctggacagtctctagaaaagtgcccaggctggttacatttga 404
             |||||||| |||||||  |||||||||||||| ||||||||||
Sbjct: 83586 cctggacaatctctagcgaagtgcccaggctgtttacatttga 83544



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                       
Query: 362   cctggacagtctctagaaaagtgcccaggctggttacatttg 403
             |||||||||||||||| | ||||||| ||||| |||||||||
Sbjct: 83448 cctggacagtctctagcatagtgcccgggctgtttacatttg 83407



 Score = 46.1 bits (23), Expect = 0.088
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                    
Query: 266   ggacagtctctcgcaaagtgaccaggctgattacatttg 304
             ||||||||||| | |||||| |||||||| |||||||||
Sbjct: 83514 ggacagtctctagaaaagtgcccaggctgtttacatttg 83476



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 266   ggacagtctctcgcaaagtgaccaggctgattacatttgta 306
             ||||||||||| ||| |||| || ||||| |||||||||||
Sbjct: 83445 ggacagtctctagcatagtgcccgggctgtttacatttgta 83405
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 41/42 (97%)
 Strand = Plus / Minus

                                                        
Query: 363    ctggacagtctctagaaaagtgcccaggctggttacatttga 404
              ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 566117 ctggacagtctctagaaaagtgcccaggctgtttacatttga 566076



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                         
Query: 362    cctggacagtctctagaaaagtgcccaggctggttacatttga 404
              |||||||| |||||||  |||||||||||||| ||||||||||
Sbjct: 566187 cctggacaatctctagcgaagtgcccaggctgtttacatttga 566145



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                        
Query: 362    cctggacagtctctagaaaagtgcccaggctggttacatttg 403
              |||||||||||||||| | ||||||| ||||| |||||||||
Sbjct: 566049 cctggacagtctctagcatagtgcccgggctgtttacatttg 566008



 Score = 46.1 bits (23), Expect = 0.088
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                     
Query: 266    ggacagtctctcgcaaagtgaccaggctgattacatttg 304
              ||||||||||| | |||||| |||||||| |||||||||
Sbjct: 566115 ggacagtctctagaaaagtgcccaggctgtttacatttg 566077



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                       
Query: 266    ggacagtctctcgcaaagtgaccaggctgattacatttgta 306
              ||||||||||| ||| |||| || ||||| |||||||||||
Sbjct: 566046 ggacagtctctagcatagtgcccgggctgtttacatttgta 566006
to top
>dbj|AK073598.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033047G19, full
            insert sequence
          Length = 3170

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 41/42 (97%)
 Strand = Plus / Minus

                                                      
Query: 363  ctggacagtctctagaaaagtgcccaggctggttacatttga 404
            ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2804 ctggacagtctctagaaaagtgcccaggctgtttacatttga 2763



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                       
Query: 362  cctggacagtctctagaaaagtgcccaggctggttacatttga 404
            |||||||| |||||||  |||||||||||||| ||||||||||
Sbjct: 2874 cctggacaatctctagcgaagtgcccaggctgtttacatttga 2832



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 362  cctggacagtctctagaaaagtgcccaggctggttacatttg 403
            |||||||||||||||| | ||||||| ||||| |||||||||
Sbjct: 2736 cctggacagtctctagcatagtgcccgggctgtttacatttg 2695



 Score = 46.1 bits (23), Expect = 0.088
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 266  ggacagtctctcgcaaagtgaccaggctgattacatttg 304
            ||||||||||| | |||||| |||||||| |||||||||
Sbjct: 2802 ggacagtctctagaaaagtgcccaggctgtttacatttg 2764



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 266  ggacagtctctcgcaaagtgaccaggctgattacatttgta 306
            ||||||||||| ||| |||| || ||||| |||||||||||
Sbjct: 2733 ggacagtctctagcatagtgcccgggctgtttacatttgta 2693
to top
>gb|AC026124.35| Homo sapiens 12 BAC RP11-305O6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 181835

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 105   tagtgcaaatacatgaaaata 125
             |||||||||||||||||||||
Sbjct: 52912 tagtgcaaatacatgaaaata 52932
to top
>gb|AC091491.3| Homo sapiens chromosome 3 clone RP11-15F1 map 3p, complete sequence
          Length = 152888

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 84    ctattgacaatcaagatcaag 104
             |||||||||||||||||||||
Sbjct: 79351 ctattgacaatcaagatcaag 79331
to top
>gb|AC012597.24|AC012597 Homo sapiens 12 BAC RP11-47G13 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 158591

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 105  tagtgcaaatacatgaaaata 125
            |||||||||||||||||||||
Sbjct: 5273 tagtgcaaatacatgaaaata 5253
to top
>ref|NM_106209.1| Arabidopsis thaliana nucleic acid binding AT1G75560 mRNA, complete
           cds
          Length = 1134

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 291 acagtctcttgcaaagtgaccagg 268
to top
>gb|BT005709.1| Arabidopsis thaliana clone U50844 putative DNA-binding protein
           (At1g75560) mRNA, complete cds
          Length = 805

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 210 acagtctcttgcaaagtgaccagg 187
to top
>gb|AC108733.4| Homo sapiens 3 BAC RP11-789F5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 171184

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   acatgaaaatactacaagca 134
             ||||||||||||||||||||
Sbjct: 27334 acatgaaaatactacaagca 27353
to top
>gb|AY085039.1| Arabidopsis thaliana clone 125348 mRNA, complete sequence
          Length = 1134

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 291 acagtctcttgcaaagtgaccagg 268
to top
>gb|AC006434.5|AC006434 Genomic sequence for Arabidopsis thaliana BAC F10A5, complete sequence
          Length = 129547

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 268   acagtctctcgcaaagtgaccagg 291
             ||||||||| ||||||||||||||
Sbjct: 87249 acagtctcttgcaaagtgaccagg 87226
to top
>dbj|AK176626.1| Arabidopsis thaliana mRNA for DNA-binding protein, complete cds,
           clone: RAFL25-16-K13
          Length = 1130

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 288 acagtctcttgcaaagtgaccagg 265
to top
>dbj|AK176616.1| Arabidopsis thaliana mRNA for DNA-binding protein, complete cds,
           clone: RAFL25-14-E03
          Length = 1130

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 288 acagtctcttgcaaagtgaccagg 265
to top
>dbj|AK176516.1| Arabidopsis thaliana mRNA for DNA-binding protein, complete cds,
           clone: RAFL25-03-D03
          Length = 1127

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 288 acagtctcttgcaaagtgaccagg 265
to top
>dbj|AK176208.1| Arabidopsis thaliana mRNA for DNA-binding protein, complete cds,
           clone: RAFL23-08-K04
          Length = 1105

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 283 acagtctcttgcaaagtgaccagg 260
to top
>dbj|AK175841.1| Arabidopsis thaliana mRNA for DNA-binding protein, complete cds,
           clone: RAFL22-45-I15
          Length = 1103

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 281 acagtctcttgcaaagtgaccagg 258
to top
>dbj|AK175304.1| Arabidopsis thaliana mRNA for DNA-binding protein, complete cds,
           clone: RAFL21-73-M07
          Length = 1132

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 291 acagtctcttgcaaagtgaccagg 268
to top
>dbj|AK175269.1| Arabidopsis thaliana mRNA for DNA-binding protein, complete cds,
           clone: RAFL21-70-F08
          Length = 1123

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 283 acagtctcttgcaaagtgaccagg 260
to top
>dbj|AK175193.1| Arabidopsis thaliana mRNA for DNA-binding protein, complete cds,
           clone: RAFL21-61-A16
          Length = 1127

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 288 acagtctcttgcaaagtgaccagg 265
to top
>dbj|AK118306.1| Arabidopsis thaliana At1g75560 mRNA for putative DNA-binding
           protein, complete cds, clone: RAFL19-59-C19
          Length = 1114

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 268 acagtctctcgcaaagtgaccagg 291
           ||||||||| ||||||||||||||
Sbjct: 281 acagtctcttgcaaagtgaccagg 258
to top
>emb|AJ323481.1|HSA323481 Homo sapiens genomic sequence surrounding NotI site, clone
           NB1-1039R
          Length = 923

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 328 gccgccaactgaagaaccgt 347
           ||||||||||||||||||||
Sbjct: 251 gccgccaactgaagaaccgt 270
to top
>emb|AL591584.14| Mouse DNA sequence from clone RP23-335N12 on chromosome 2, complete
              sequence
          Length = 177754

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 248    tggccaacaccctgcgccgg 267
              ||||||||||||||||||||
Sbjct: 138629 tggccaacaccctgcgccgg 138610
to top
>dbj|AP000886.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB1750A9
          Length = 220495

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 347    tagggggcagcctgtcctggacag 370
              |||||||||||||| |||||||||
Sbjct: 149864 tagggggcagcctgccctggacag 149841


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,116,288
Number of Sequences: 3902068
Number of extensions: 4116288
Number of successful extensions: 63651
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63601
Number of HSP's gapped (non-prelim): 50
length of query: 404
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 382
effective length of database: 17,147,199,772
effective search space: 6550230312904
effective search space used: 6550230312904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top