ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01e03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC024886.20| Homo sapiens 3 BAC RP11-25K24 (Roswell Park Canc... 44 0.32
2emb|AL606480.11| Mouse DNA sequence from clone RP23-112C19 on ch... 44 0.32
3emb|BX294392.3| Zebrafish DNA sequence from clone CH211-262O24 i... 44 0.32
4emb|AL929188.6| Zebrafish DNA sequence from clone CH211-273O6 in... 44 0.32
5gb|AC118594.6| Mus musculus chromosome 1, clone RP24-479J20, com... 42 1.3
6ref|XM_461866.1| Debaryomyces hansenii CBS767 hypothetical prote... 42 1.3
7gb|AC140783.4| Mus musculus BAC clone RP24-253K16 from chromosom... 42 1.3
8gb|AC137905.8| Mus musculus chromosome 15, clone RP23-334B11, co... 42 1.3
9ref|XM_543569.2| PREDICTED: Canis familiaris similar to phosphat... 42 1.3
10gb|AC103610.9| Mus musculus chromosome 9, clone RP23-364M24, com... 42 1.3
11emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS... 42 1.3
12emb|AL672176.10| Zebrafish DNA sequence from clone BUSM1-12F11 i... 42 1.3
13dbj|AK169953.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 42 1.3
14dbj|AK169831.1| Mus musculus 2 days neonate thymus thymic cells ... 42 1.3
15gb|AC022313.5| Homo sapiens BAC clone RP11-437G1 from 4, complet... 42 1.3
16dbj|AK162665.1| Mus musculus adult male bone cDNA, RIKEN full-le... 42 1.3
17dbj|AK013519.1| Mus musculus adult male hippocampus cDNA, RIKEN ... 42 1.3
18dbj|AK088154.1| Mus musculus 2 days neonate thymus thymic cells ... 42 1.3
19dbj|AK029071.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 42 1.3
20gb|AE001439.1| Helicobacter pylori J99, complete genome 42 1.3
21emb|AL133246.3|CNS01DUJ BAC sequence from the SPG4 candidate reg... 42 1.3
22emb|AL646048.22| Mouse DNA sequence from clone RP23-289C5 on chr... 42 1.3
23gb|AF282174.1| Canis familiaris clone UOR0445 trinucleotide repe... 40 5.0
24gb|AC003676.1| Homo sapiens chromosome 2, P1 clone 777H5 (LBNL H... 40 5.0
25gb|AC103376.7| Mus musculus chromosome 8, clone RP24-226P5, comp... 40 5.0
26gb|AC103405.14| Mus musculus chromosome 19, clone RP23-98J4, com... 40 5.0
27ref|XM_569280.1| Cryptococcus neoformans var. neoformans JEC21 A... 40 5.0
28ref|XM_862890.1| PREDICTED: Canis familiaris similar to G patch ... 40 5.0
29ref|XM_848771.1| PREDICTED: Canis familiaris similar to G patch ... 40 5.0
30emb|AL391058.25| Human DNA sequence from clone RP11-512F24 on ch... 40 5.0
31emb|CR550302.15| Zebrafish DNA sequence from clone DKEY-145I3 in... 40 5.0
32emb|BX957333.8| Zebrafish DNA sequence from clone CH211-10M5 in ... 40 5.0
33gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 5.0
34gb|AF257497.4| Homo sapiens chromosome 8 clone CTC-423F14 map 8q... 40 5.0
35gb|AF216667.4| Homo sapiens chromosome 8 clone CTC-543J1 map 8q2... 40 5.0
36gb|AC104441.2| Homo sapiens chromosome 3 clone RP11-901H12, comp... 40 5.0
37gb|AC009622.9| Homo sapiens chromosome , clone RP11-207A4, compl... 40 5.0
38ref|XM_625627.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 5.0
39emb|BX248517.10| Zebrafish DNA sequence from clone DKEY-30O16 in... 40 5.0
40gb|AC148663.1| Macaca mulatta Major Histocompatibility Complex B... 40 5.0
41gb|AC148661.1| Macaca mulatta Major Histocompatibility Complex B... 40 5.0
42gb|AC104599.4| Homo sapiens BAC clone RP11-652K9 from 2, complet... 40 5.0
43gb|AC079895.7| Homo sapiens BAC clone RP11-749M12 from 2, comple... 40 5.0
44dbj|AP006391.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 5.0
45emb|AL732512.7| Mouse DNA sequence from clone RP23-21G12 on chro... 40 5.0
46emb|AL713874.8| Mouse DNA sequence from clone RP23-375P22 on chr... 40 5.0
47dbj|AP000485.5| Homo sapiens genomic DNA, chromosome 11, clone:C... 40 5.0
48dbj|AP001157.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.0 
>gb|AC024886.20| Homo sapiens 3 BAC RP11-25K24 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 173270

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 65   ctcgtgtcacaaaaacaaaaat 86
            ||||||||||||||||||||||
Sbjct: 4827 ctcgtgtcacaaaaacaaaaat 4848
to top
>emb|AL606480.11| Mouse DNA sequence from clone RP23-112C19 on chromosome 11 Contains the
              3' end of the Col1a1 gene for procollagen type I alpha 1,
              the Sgca gene for alpha sarcoglycan (dystrophin-associated
              glycoprotein), the Hils1 gene for histone H1-like protein
              in spermatids 1, the Ppp1r9b gene for protein phosphatase 1
              regulatory subunit 9B, a novel gene (A930041A10Rik,
              B930032I08Rik, C530046K03Rik), the Pdk2 gene for pyruvate
              dehydrogenase kinase isoenzyme 2, a novel gene, the Itga3
              gene for integrin alpha 3, the Dlx3 gene for distal-less
              homeobox 3 and three CpG islands, complete sequence
          Length = 186276

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 162    tagatgtagcaacctaacaaca 183
              ||||||||||||||||||||||
Sbjct: 151156 tagatgtagcaacctaacaaca 151177
to top
>emb|BX294392.3| Zebrafish DNA sequence from clone CH211-262O24 in linkage group 23,
             complete sequence
          Length = 141252

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 82    aaaatctgttttacacatgcca 103
             ||||||||||||||||||||||
Sbjct: 93181 aaaatctgttttacacatgcca 93160
to top
>emb|AL929188.6| Zebrafish DNA sequence from clone CH211-273O6 in linkage group 23,
              complete sequence
          Length = 150865

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 82     aaaatctgttttacacatgcca 103
              ||||||||||||||||||||||
Sbjct: 122585 aaaatctgttttacacatgcca 122564
to top
>gb|AC118594.6| Mus musculus chromosome 1, clone RP24-479J20, complete sequence
          Length = 209825

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 73     acaaaaacaaaaatctgtttt 93
              |||||||||||||||||||||
Sbjct: 159812 acaaaaacaaaaatctgtttt 159792
to top
>ref|XM_461866.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0G07953g)
           partial mRNA
          Length = 963

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 207 aaatatacaatgtacaagttg 227
           |||||||||||||||||||||
Sbjct: 907 aaatatacaatgtacaagttg 887
to top
>gb|AC140783.4| Mus musculus BAC clone RP24-253K16 from chromosome 15, complete
             sequence
          Length = 165903

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 75    aaaaacaaaaatctgttttac 95
             |||||||||||||||||||||
Sbjct: 88392 aaaaacaaaaatctgttttac 88412
to top
>gb|AC137905.8| Mus musculus chromosome 15, clone RP23-334B11, complete sequence
          Length = 210548

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 75    aaaaacaaaaatctgttttac 95
             |||||||||||||||||||||
Sbjct: 50849 aaaaacaaaaatctgttttac 50869
to top
>ref|XM_543569.2| PREDICTED: Canis familiaris similar to phosphatidylinositol 4-kinase,
            catalytic, alpha polypeptide isoform 2 (LOC486443), mRNA
          Length = 5619

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 287  tgttgtcaatggcaatggctcggag 311
            ||||||||||||||||| |||||||
Sbjct: 1168 tgttgtcaatggcaatgtctcggag 1144
to top
>gb|AC103610.9| Mus musculus chromosome 9, clone RP23-364M24, complete sequence
          Length = 205900

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 202   cacaaaaatatacaatgtaca 222
             |||||||||||||||||||||
Sbjct: 58059 cacaaaaatatacaatgtaca 58079
to top
>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces
              hansenii
          Length = 2051428

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 207    aaatatacaatgtacaagttg 227
              |||||||||||||||||||||
Sbjct: 631764 aaatatacaatgtacaagttg 631784
to top
>emb|AL672176.10| Zebrafish DNA sequence from clone BUSM1-12F11 in linkage group 19
             Contains the 3' part of the rxrb gene for retinoid x
             receptor beta, a novel gene, the col11a2 gene for collagen
             type XI alpha-2,  the fabgl gene for FabG
             (beta-ketoacyl-[acyl-carrier-protein] reductase, E. coli)
             like, and the 3' part of the brd2 gene for
             bromodomain-containing protein 2, complete sequence
          Length = 100037

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 75    aaaaacaaaaatctgttttacacatgcca 103
             ||||| |||||||||||||| ||||||||
Sbjct: 39439 aaaaaaaaaaatctgttttagacatgcca 39411
to top
>dbj|AK169953.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630005G05
            product:sortilin-related receptor, LDLR class A
            repeats-containing, full insert sequence
          Length = 3973

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 202  cacaaaaatatacaatgtaca 222
            |||||||||||||||||||||
Sbjct: 2322 cacaaaaatatacaatgtaca 2302
to top
>dbj|AK169831.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430031A01
            product:sortilin-related receptor, LDLR class A
            repeats-containing, full insert sequence
          Length = 5197

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 202  cacaaaaatatacaatgtaca 222
            |||||||||||||||||||||
Sbjct: 3655 cacaaaaatatacaatgtaca 3635
to top
>gb|AC022313.5| Homo sapiens BAC clone RP11-437G1 from 4, complete sequence
          Length = 183516

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 73    acaaaaacaaaaatctgtttt 93
             |||||||||||||||||||||
Sbjct: 85075 acaaaaacaaaaatctgtttt 85055
to top
>dbj|AK162665.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched
           library, clone:9830164D01 product:sortilin-related
           receptor, LDLR class A repeats-containing, full insert
           sequence
          Length = 2030

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 202 cacaaaaatatacaatgtaca 222
           |||||||||||||||||||||
Sbjct: 490 cacaaaaatatacaatgtaca 470
to top
>dbj|AK013519.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched
            library, clone:2900010L19 product:inferred: RIKEN cDNA
            2900010L19 gene / gp250 precursor {Mus musculus}, full
            insert sequence
          Length = 3096

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 202  cacaaaaatatacaatgtaca 222
            |||||||||||||||||||||
Sbjct: 1447 cacaaaaatatacaatgtaca 1427
to top
>dbj|AK088154.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430005C19
            product:sortilin-related receptor, LDLR class A
            repeats-containing, full insert sequence
          Length = 5200

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 202  cacaaaaatatacaatgtaca 222
            |||||||||||||||||||||
Sbjct: 3654 cacaaaaatatacaatgtaca 3634
to top
>dbj|AK029071.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:4732488K06 product:sortilin-related
            receptor, LDLR class A repeats-containing, full insert
            sequence
          Length = 4546

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 202  cacaaaaatatacaatgtaca 222
            |||||||||||||||||||||
Sbjct: 2893 cacaaaaatatacaatgtaca 2873
to top
>gb|AE001439.1| Helicobacter pylori J99, complete genome
          Length = 1643831

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 72      cacaaaaacaaaaatctgttt 92
               |||||||||||||||||||||
Sbjct: 1395945 cacaaaaacaaaaatctgttt 1395925
to top
>emb|AL133246.3|CNS01DUJ BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 852C13 of
             library RPCI-11 from chromosome 2 of Homo sapiens (Human)
          Length = 222730

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 69    tgtcacaaaaacaaaaatctg 89
             |||||||||||||||||||||
Sbjct: 18885 tgtcacaaaaacaaaaatctg 18865
to top
>emb|AL646048.22| Mouse DNA sequence from clone RP23-289C5 on chromosome X, complete
            sequence
          Length = 114787

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 73   acaaaaacaaaaatctgtttt 93
            |||||||||||||||||||||
Sbjct: 2637 acaaaaacaaaaatctgtttt 2617
to top
>gb|AF282174.1| Canis familiaris clone UOR0445 trinucleotide repeat marker
          Length = 337

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 56  acaaactgactcgtgtcacaaaaa 79
           ||||||||||| ||||||||||||
Sbjct: 130 acaaactgactagtgtcacaaaaa 153
to top
>gb|AC003676.1| Homo sapiens chromosome 2, P1 clone 777H5 (LBNL H27), complete sequence
          Length = 86894

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 136   ccctcaatagccaaaaacaa 155
             ||||||||||||||||||||
Sbjct: 52110 ccctcaatagccaaaaacaa 52129
to top
>gb|AC103376.7| Mus musculus chromosome 8, clone RP24-226P5, complete sequence
          Length = 165714

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 142   atagccaaaaacaaagttcc 161
             ||||||||||||||||||||
Sbjct: 99643 atagccaaaaacaaagttcc 99624
to top
>gb|AC103405.14| Mus musculus chromosome 19, clone RP23-98J4, complete sequence
          Length = 227074

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    caaaaacaaaaatctgtttt 93
             ||||||||||||||||||||
Sbjct: 47373 caaaaacaaaaatctgtttt 47354
to top
>ref|XM_569280.1| Cryptococcus neoformans var. neoformans JEC21 ATP dependent DNA
            helicase (CNB05360) partial mRNA
          Length = 2372

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   catgccagtatacttgacaa 116
            ||||||||||||||||||||
Sbjct: 2230 catgccagtatacttgacaa 2211
to top
>ref|XM_862890.1| PREDICTED: Canis familiaris similar to G patch domain containing 1,
            transcript variant 3 (LOC476495), mRNA
          Length = 3057

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 308  ggagttctctgaggttgcag 327
            ||||||||||||||||||||
Sbjct: 1181 ggagttctctgaggttgcag 1162
to top
>ref|XM_848771.1| PREDICTED: Canis familiaris similar to G patch domain containing 1,
            transcript variant 2 (LOC476495), mRNA
          Length = 3057

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 308  ggagttctctgaggttgcag 327
            ||||||||||||||||||||
Sbjct: 1181 ggagttctctgaggttgcag 1162
to top
>emb|AL391058.25| Human DNA sequence from clone RP11-512F24 on chromosome 1 Contains part
             of the gene for membrane-associated guanylate
             kinase-related 3 (MAGI-3) and a heterogeneous nuclear
             ribonucleoprotein A3 (hnRNPA3) pseudogene, complete
             sequence
          Length = 82483

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   caatagccaaaaacaaagtt 159
             ||||||||||||||||||||
Sbjct: 19275 caatagccaaaaacaaagtt 19256
to top
>emb|CR550302.15| Zebrafish DNA sequence from clone DKEY-145I3 in linkage group 11,
             complete sequence
          Length = 202610

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    aaaaacaaaaatctgtttta 94
             ||||||||||||||||||||
Sbjct: 28251 aaaaacaaaaatctgtttta 28232
to top
>emb|BX957333.8| Zebrafish DNA sequence from clone CH211-10M5 in linkage group 25,
             complete sequence
          Length = 170161

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    aaaaacaaaaatctgtttta 94
             ||||||||||||||||||||
Sbjct: 55083 aaaaacaaaaatctgtttta 55064
to top
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete
               sequence
          Length = 1632307

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 97      catgccagtatacttgacaa 116
               ||||||||||||||||||||
Sbjct: 1516101 catgccagtatacttgacaa 1516120
to top
>gb|AF257497.4| Homo sapiens chromosome 8 clone CTC-423F14 map 8q24.3, complete
             sequence
          Length = 87220

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 231   aggaatctggtgcacaaagaggtt 254
             |||||||||| |||||||||||||
Sbjct: 51324 aggaatctggagcacaaagaggtt 51301
to top
>gb|AF216667.4| Homo sapiens chromosome 8 clone CTC-543J1 map 8q24.3, complete sequence
          Length = 178780

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 231    aggaatctggtgcacaaagaggtt 254
              |||||||||| |||||||||||||
Sbjct: 157793 aggaatctggagcacaaagaggtt 157770
to top
>gb|AC104441.2| Homo sapiens chromosome 3 clone RP11-901H12, complete sequence
          Length = 177320

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 119    tcttttgtgtaaaatctccctcaa 142
              ||||||||||||||||||| ||||
Sbjct: 121454 tcttttgtgtaaaatctccttcaa 121477
to top
>gb|AC009622.9| Homo sapiens chromosome , clone RP11-207A4, complete sequence
          Length = 183687

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 231    aggaatctggtgcacaaagaggtt 254
              |||||||||| |||||||||||||
Sbjct: 154477 aggaatctggagcacaaagaggtt 154500
to top
>ref|XM_625627.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd4_180),
            partial mRNA
          Length = 4425

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 76   aaaacaaaaatctgttttac 95
            ||||||||||||||||||||
Sbjct: 2606 aaaacaaaaatctgttttac 2625
to top
>emb|BX248517.10| Zebrafish DNA sequence from clone DKEY-30O16 in linkage group 16,
              complete sequence
          Length = 201353

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     tcacaaaaacaaaaatctgt 90
              ||||||||||||||||||||
Sbjct: 135195 tcacaaaaacaaaaatctgt 135176
to top
>gb|AC148663.1| Macaca mulatta Major Histocompatibility Complex BAC MMU012K22, complete
             sequence
          Length = 174897

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    acaaaaacaaaaatctgttt 92
             ||||||||||||||||||||
Sbjct: 69591 acaaaaacaaaaatctgttt 69610
to top
>gb|AC148661.1| Macaca mulatta Major Histocompatibility Complex BAC MMU007H18, complete
             sequence
          Length = 215614

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    acaaaaacaaaaatctgttt 92
             ||||||||||||||||||||
Sbjct: 20939 acaaaaacaaaaatctgttt 20958
to top
>gb|AC104599.4| Homo sapiens BAC clone RP11-652K9 from 2, complete sequence
          Length = 80146

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   ccctcaatagccaaaaacaa 155
             ||||||||||||||||||||
Sbjct: 66007 ccctcaatagccaaaaacaa 65988
to top
>gb|AC079895.7| Homo sapiens BAC clone RP11-749M12 from 2, complete sequence
          Length = 149309

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   ccctcaatagccaaaaacaa 155
             ||||||||||||||||||||
Sbjct: 55159 ccctcaatagccaaaaacaa 55140
to top
>dbj|AP006391.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT09E08, TM0265,
             complete sequence
          Length = 100864

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   atttctttacttctggggca 203
             ||||||||||||||||||||
Sbjct: 90234 atttctttacttctggggca 90215
to top
>emb|AL732512.7| Mouse DNA sequence from clone RP23-21G12 on chromosome 4, complete
             sequence
          Length = 46643

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   agttcttttgtgtaaaatct 135
             ||||||||||||||||||||
Sbjct: 32118 agttcttttgtgtaaaatct 32137
to top
>emb|AL713874.8| Mouse DNA sequence from clone RP23-375P22 on chromosome 4, complete
            sequence
          Length = 138663

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 203  acaaaaatatacaatgtaca 222
            ||||||||||||||||||||
Sbjct: 2151 acaaaaatatacaatgtaca 2170
to top
>dbj|AP000485.5| Homo sapiens genomic DNA, chromosome 11, clone:CMB9-21L24, complete
             sequence
          Length = 139072

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 75    aaaaacaaaaatctgtttta 94
             ||||||||||||||||||||
Sbjct: 42391 aaaaacaaaaatctgtttta 42372
to top
>dbj|AP001157.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-658F2, complete
              sequence
          Length = 200458

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     aaaaacaaaaatctgtttta 94
              ||||||||||||||||||||
Sbjct: 187770 aaaaacaaaaatctgtttta 187751


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,225,059
Number of Sequences: 3902068
Number of extensions: 5225059
Number of successful extensions: 103855
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103744
Number of HSP's gapped (non-prelim): 111
length of query: 377
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 355
effective length of database: 17,147,199,772
effective search space: 6087255919060
effective search space used: 6087255919060
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top