ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRCB_ANASP (Q8YRV2) Protein crcB homolog 28 6.7
2SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains pro... 28 6.7
3IF4G1_MOUSE (Q6NZJ6) Eukaryotic translation initiation factor 4 ... 28 8.8
4PRP45_DEBHA (Q6BV91) Pre-mRNA-splicing factor PRP45 (Pre-mRNA-pr... 28 8.8
5WT1_PIG (O62651) Wilms' tumor protein homolog 28 8.8
6WT1_HUMAN (P19544) Wilms' tumor protein (WT33) 28 8.8

>CRCB_ANASP (Q8YRV2) Protein crcB homolog|
          Length = 157

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 201 RNILATGSEWAASGVIGRTSNVIGFLM 281
           RN+LA G  WA S ++G  S  IG ++
Sbjct: 126 RNLLAAGFYWAGSSILGVISIQIGIIL 152



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>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2161

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -1

Query: 354  GQVFGFASTPGSPPLPPDL 298
            GQ FG +STPG PP PP L
Sbjct: 1734 GQAFGGSSTPG-PPYPPQL 1751



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>IF4G1_MOUSE (Q6NZJ6) Eukaryotic translation initiation factor 4 gamma 1|
           (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1)
          Length = 1600

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +2

Query: 275 PDDLSQCLRSGGRGGEPGVEAKPKT 349
           PDD SQ    GGR G PG E  P T
Sbjct: 239 PDDRSQGAAIGGRPGLPGPEHSPGT 263



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>PRP45_DEBHA (Q6BV91) Pre-mRNA-splicing factor PRP45 (Pre-mRNA-processing|
           protein 45)
          Length = 341

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 191 KYS*KHPSYRFRVGSVRRHRKNIQCDRLPDDLS 289
           KYS   P+ R ++  VR H K+ Q  +LP++ S
Sbjct: 10  KYSSHEPTSRIKLKKVRAHEKSNQLVKLPENKS 42



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>WT1_PIG (O62651) Wilms' tumor protein homolog|
          Length = 449

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 372 PTASAHGQVFGFASTPGSPPLPPDLKH 292
           P ASA+G + G A  P  PP PP   H
Sbjct: 43  PGASAYGSLGGPAPPPAPPPPPPPPPH 69



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>WT1_HUMAN (P19544) Wilms' tumor protein (WT33)|
          Length = 449

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 372 PTASAHGQVFGFASTPGSPPLPPDLKH 292
           P ASA+G + G A  P  PP PP   H
Sbjct: 43  PGASAYGSLGGPAPPPAPPPPPPPPPH 69


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,912,452
Number of Sequences: 219361
Number of extensions: 1136177
Number of successful extensions: 2958
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2958
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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