ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl01d10 |
|---|---|
| Clone Library Name | barley_pub |
>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor| [Contains: Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore complex protein Nup96 (Nucleoporin Nup96) (96 kDa nucleoporin)] Length = 1729 Score = 34.3 bits (77), Expect = 0.14 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = -1 Query: 423 AEEQGVEFISFDGAKGEWKFRVKHFSSYGFGEAEAD 316 + +QG +F + G W F+V HFS YG +++ + Sbjct: 856 SRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEE 891
>NUP98_RAT (P49793) Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98| kDa nucleoporin) Length = 937 Score = 34.3 bits (77), Expect = 0.14 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = -1 Query: 423 AEEQGVEFISFDGAKGEWKFRVKHFSSYGFGEAEAD 316 + +QG +F + G W F+V HFS YG +++ + Sbjct: 855 SRKQGAQFKEYRPETGSWVFKVSHFSKYGLQDSDEE 890
>NU189_SCHPO (Q9UTK4) Nucleoporin nup189 (Nuclear pore protein nup189)| Length = 1778 Score = 30.8 bits (68), Expect = 1.6 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = -1 Query: 405 EFISFDGAKGEWKFRVKHFSSYGFGEAEAD 316 EFI F+ G+W F+V+HFS YG + E + Sbjct: 918 EFIDFND--GKWIFKVQHFSRYGLLDDEEE 945
>Y368_LISMO (Q8Y9Z9) Putative Nudix hydrolase lmo0368 (EC 3.6.-.-)| Length = 169 Score = 30.4 bits (67), Expect = 2.1 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = -1 Query: 156 EFLPMFFCTYLFSLKNAQKLH 94 EF+P FF LF+LKNA +H Sbjct: 148 EFIPYFFLNQLFNLKNATTIH 168
>VGLG_BRSV4 (O10684) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 263 Score = 30.0 bits (66), Expect = 2.7 Identities = 22/56 (39%), Positives = 30/56 (53%) Frame = +3 Query: 144 WEGTHSSIQRTKASQPIFSQTRSATSTKAT*NRVFTNHPKEAAITTPIDKATRNQP 311 ++ TH+SIQ T SQP T S T+ NR T + K + +TP+ ATR P Sbjct: 96 YKSTHTSIQSTTLSQPPNIDTTSGTTYGHPTNR--TQNRKIKSQSTPL--ATRKPP 147
>VGLG_BRSV1 (O10683) Major surface glycoprotein G (Attachment glycoprotein G)| Length = 263 Score = 30.0 bits (66), Expect = 2.7 Identities = 22/56 (39%), Positives = 30/56 (53%) Frame = +3 Query: 144 WEGTHSSIQRTKASQPIFSQTRSATSTKAT*NRVFTNHPKEAAITTPIDKATRNQP 311 ++ TH+SIQ T SQP T S T+ NR T + K + +TP+ ATR P Sbjct: 96 YKSTHTSIQSTTLSQPPNIDTTSGTTYGHPTNR--TQNRKIKSQSTPL--ATRKPP 147
>Y387_LISIN (Q92ES1) Putative Nudix hydrolase lin0387 (EC 3.6.-.-)| Length = 169 Score = 30.0 bits (66), Expect = 2.7 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -1 Query: 156 EFLPMFFCTYLFSLKNAQKLH 94 EF+P FF LF LKNA +H Sbjct: 148 EFIPYFFLNQLFELKNATTIH 168
>SNF22_SCHPO (O94421) SNF2-family ATP dependent chromatin remodeling factor| snf22 (EC 3.6.1.-) (ATP-dependent helicase snf22) Length = 1680 Score = 29.6 bits (65), Expect = 3.5 Identities = 17/68 (25%), Positives = 33/68 (48%) Frame = +2 Query: 44 QDSNKIPIHARATLVPECNFCAFFNEKRYVQKNMGRNS*QHSENKSITTNILPDQISYID 223 Q + K + RA N+ + + + YV+ + + SEN S+ ++LP IS+ D Sbjct: 544 QSTGKTEVAKRAQFPTNVNYSSCVDPRTYVKTPIPFSKFSSSENLSLIPSLLPPSISW-D 602 Query: 224 QSYIESSV 247 ++ S + Sbjct: 603 DVFLSSEI 610
>NU145_YEAST (P49687) Nucleoporin NUP145 precursor (EC 3.4.21.-) (Nuclear pore| protein NUP145) [Contains: Nucleoporin NUP145N (N-NUP145); Nucleoporin NUP145C (C-NUP145)] Length = 1317 Score = 28.9 bits (63), Expect = 6.0 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = -1 Query: 408 VEFISFDGAKGEWKFRVKHFSSYGF-GEAEADHLADSL 298 + +IS++ G W F+V HFS +G E +A+ D L Sbjct: 586 MNYISYNPFGGTWTFKVNHFSIWGLVNEEDAEIDEDDL 623
>UXAC_CLOPE (Q8XP14) Uronate isomerase (EC 5.3.1.12) (Glucuronate isomerase)| (Uronic isomerase) Length = 466 Score = 28.9 bits (63), Expect = 6.0 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = -1 Query: 447 FKEMLVKKAEEQGVEFISFDGAKGEWKFRVKHFSSYGFGEAEADHLADSL*LYR 286 FKE + K AE VE SFD K + R+ +F Y G DH + + Y+ Sbjct: 196 FKEYIGKLAEVSNVEIKSFDDLKKALEIRLDYF--YENGCMITDHSLERVVFYK 247
>YHD5_YEAST (P38735) Probable ATP-dependent permease YHL035C| Length = 1592 Score = 28.9 bits (63), Expect = 6.0 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = +2 Query: 20 ATKRMHFIQDSNKIPI--HARATLVPECNFCAFFNEKRYVQKNMGR 151 A++ + + K PI H TLV C AF +E+R++ +NM + Sbjct: 1162 ASRELKRLDSITKSPIFQHFSETLVGVCTIRAFGDERRFILENMNK 1207
>DNM3B_HUMAN (Q9UBC3) DNA (cytosine-5)-methyltransferase 3B (EC 2.1.1.37)| (Dnmt3b) (DNA methyltransferase HsaIIIB) (DNA MTase HsaIIIB) (M.HsaIIIB) Length = 853 Score = 28.9 bits (63), Expect = 6.0 Identities = 15/60 (25%), Positives = 30/60 (50%) Frame = +3 Query: 129 MYRKTWEGTHSSIQRTKASQPIFSQTRSATSTKAT*NRVFTNHPKEAAITTPIDKATRNQ 308 ++R+T + S RT+ + + S+ R S ++T R NH E+ + P ++ R + Sbjct: 90 LFRETRTRSESPAVRTRNNNSVSSRERHRPSPRSTRGRQGRNHVDESPVEFPATRSLRRR 149
>CXI8_CONRA (Q7Z091) I-superfamily conotoxin R11.8 (r11d)| Length = 41 Score = 28.5 bits (62), Expect = 7.9 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -2 Query: 302 PCSFIDRCCNCCL 264 PCS+ CCNCCL Sbjct: 8 PCSYHADCCNCCL 20
>CXI17_CONRA (Q7Z093) I-superfamily conotoxin R11.17| Length = 46 Score = 28.5 bits (62), Expect = 7.9 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -2 Query: 302 PCSFIDRCCNCCL 264 PCS+ CCNCCL Sbjct: 11 PCSYHADCCNCCL 23
>CXI14_CONRA (Q7Z092) I-superfamily conotoxin R11.14 (r11b)| Length = 46 Score = 28.5 bits (62), Expect = 7.9 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -2 Query: 302 PCSFIDRCCNCCL 264 PCS+ CCNCCL Sbjct: 11 PCSYHADCCNCCL 23
>AB1IP_XENLA (Q6DCV1) Amyloid beta A4 precursor protein-binding family B member| 1-interacting protein (APBB1-interacting protein 1) Length = 653 Score = 28.5 bits (62), Expect = 7.9 Identities = 16/46 (34%), Positives = 25/46 (54%) Frame = +3 Query: 87 CQNVTFVHSSMKKDMYRKTWEGTHSSIQRTKASQPIFSQTRSATST 224 CQNVT + SS + W+ ++ Q K+S+ +T+SAT T Sbjct: 447 CQNVTTISSS-----FSDAWKHGEANKQEKKSSEVNKPETKSATPT 487 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,870,166 Number of Sequences: 219361 Number of extensions: 1368216 Number of successful extensions: 3831 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3733 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3831 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
