ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DJLA_MANSM (Q65RA1) DnaJ-like protein djlA 30 1.9
2GH34_ORYSA (Q60EJ6) Probable indole-3-acetic acid-amido syntheta... 28 4.2
3DUS4_MOUSE (Q8BFV3) Dual specificity protein phosphatase 4 (EC 3... 28 4.2
4GPNMB_HUMAN (Q14956) Transmembrane glycoprotein NMB precursor (T... 28 5.5
5WNK3_HUMAN (Q9BYP7) Serine/threonine-protein kinase WNK3 (EC 2.7... 28 7.2
6LALBA_CANFA (Q9N2G9) Alpha-lactalbumin precursor (Lactose syntha... 28 7.2
7DYSF_HUMAN (O75923) Dysferlin (Dystrophy-associated fer-1-like p... 27 9.4

>DJLA_MANSM (Q65RA1) DnaJ-like protein djlA|
          Length = 288

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -1

Query: 242 QTANLQLNTVPRTPIKVEEEEEDLQNNLRSQVWSDGAARHCARLALQGGK 93
           QT    L  + +   +V EE+  L NNL SQ+  D A R  A+ A   GK
Sbjct: 59  QTTFAVLGHLSKAKGRVTEEDIQLANNLMSQMQLDVANRQLAQNAFNRGK 108



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>GH34_ORYSA (Q60EJ6) Probable indole-3-acetic acid-amido synthetase GH3.4 (EC|
           6.3.2.-) (Auxin-responsive GH3-like protein 4) (OsGH3-4)
          Length = 629

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -3

Query: 270 ITVQHGAGAP--NGKPPTKYRPKNPHQSGRRRRRPTE*FEIAGVERRSGSPLC*TSITGR 97
           + + +G  +P  +GKP +++   +    G R+  PT   E+   ERRSG       +  R
Sbjct: 91  LRIANGDTSPILSGKPVSEFLTSSGTSGGERKLMPTIEEEM---ERRSGLYSLLMPVMSR 147

Query: 96  QVPGV 82
           QVPG+
Sbjct: 148 QVPGL 152



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>DUS4_MOUSE (Q8BFV3) Dual specificity protein phosphatase 4 (EC 3.1.3.48) (EC|
           3.1.3.16)
          Length = 398

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 140 DGAARHCARLALQGGKCLV*NCRP 69
           +G+  H A   L GGKCL+ +CRP
Sbjct: 33  NGSGSHGALGLLSGGKCLLLDCRP 56



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>GPNMB_HUMAN (Q14956) Transmembrane glycoprotein NMB precursor (Transmembrane|
           glycoprotein HGFIN)
          Length = 572

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 306 MNHTFCVH--FMMHITVQHGAGAPNGKPPTKYRPKNPHQS 193
           +NHT+ ++  F +++TV+  A  P   PP   RP  P  S
Sbjct: 299 VNHTYVLNGTFSLNLTVKAAAPGPCPPPPPPPRPSKPTPS 338



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>WNK3_HUMAN (Q9BYP7) Serine/threonine-protein kinase WNK3 (EC 2.7.11.1)|
           (Protein kinase with no lysine 3) (Protein kinase,
           lysine-deficient 3)
          Length = 1743

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 275 CTSQFNMALEPQTANLQLNTVPRTPIKVEEEEEDLQNNLRSQVWSDGAARHCA 117
           C S  N+  +PQ   L L    +T  + EE E D   ++R Q+      +HC+
Sbjct: 511 CKSMGNVFPQPQNTTLPLAPAQQTGAECEETEVD--QHVRQQLLQRKPQQHCS 561



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>LALBA_CANFA (Q9N2G9) Alpha-lactalbumin precursor (Lactose synthase B protein)|
          Length = 142

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 55  LLRREGRQFYTRHLPPCNASLAQWR 129
           +L +EG  ++  H P C+  L QWR
Sbjct: 114 ILDKEGIDYWLAHKPLCSEKLEQWR 138



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>DYSF_HUMAN (O75923) Dysferlin (Dystrophy-associated fer-1-like protein)|
           (Fer-1-like protein 1)
          Length = 2080

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = -3

Query: 255 GAGAPNGKPPTKYRPKNPHQSGRRRRRPTE*FEIAGVERRSGSPLC*TSITGRQVPGVKL 76
           G GAP        RP  PH  G +R+R          ++     +    I GRQ+PGV +
Sbjct: 179 GPGAPTTPRKLPSRPP-PHYPGIKRKRSAPTSRKLLSDKPQDFQIRVQVIEGRQLPGVNI 237

Query: 75  SP 70
            P
Sbjct: 238 KP 239


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,735,666
Number of Sequences: 219361
Number of extensions: 983864
Number of successful extensions: 3040
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3039
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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