ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009533.1| Triticum aestivum clone wr1.pk0133.f5:fis, full i... 111 2e-21
2emb|AL928883.19| Mouse DNA sequence from clone RP23-60E18 on chr... 42 1.2
3gb|AC110907.7| Mus musculus chromosome 7, clone RP24-180J10, com... 40 4.7
4gb|AC121862.3| Mus musculus BAC clone RP24-110E10 from chromosom... 40 4.7
5emb|CR847570.9| Zebrafish DNA sequence from clone DKEY-29M9 in l... 40 4.7
6gb|AC136740.10| Mus musculus chromosome 7, clone RP23-137A24, co... 40 4.7
7emb|AL590731.12| Human DNA sequence from clone RP11-149M6 on chr... 40 4.7
8emb|AL450163.12| Human DNA sequence from clone RP11-384L19 on ch... 40 4.7
9emb|BX769175.12| Zebrafish DNA sequence from clone DKEY-229K5 in... 40 4.7
10emb|AL161583.2|ATCHRIV79 Arabidopsis thaliana DNA chromosome 4, ... 40 4.7
11emb|AL035678.1|ATF17M5 Arabidopsis thaliana DNA chromosome 4, BA... 40 4.7
12dbj|AK155714.1| Mus musculus B6-derived CD11 +ve dendritic cells... 40 4.7
13gb|AC090666.6| Homo sapiens chromosome 18, clone RP11-116K4, com... 40 4.7
14gb|AC122427.6| Mus musculus BAC clone RP24-175C2 from chromosome... 40 4.7
15emb|BX942841.12| Zebrafish DNA sequence from clone CH211-59D15 i... 40 4.7
16gb|AC113278.15| Mus musculus chromosome 3, clone RP23-387I7, com... 40 4.7
17emb|AL935192.10| Zebrafish DNA sequence from clone CH211-252B2, ... 40 4.7 
>gb|BT009533.1| Triticum aestivum clone wr1.pk0133.f5:fis, full insert mRNA sequence
          Length = 1820

 Score =  111 bits (56), Expect = 2e-21
 Identities = 80/88 (90%)
 Strand = Plus / Minus

                                                                        
Query: 47   ttacaatccttctcagacgagaagggcgacagttttacaccaggcacttgcctccctgta 106
            |||||||||||  ||| ||| |||||||||||||| |||||  |||||||||||||||||
Sbjct: 1305 ttacaatcctttacaggcgaaaagggcgacagtttcacaccgagcacttgcctccctgta 1246

                                        
Query: 107  atgctagtctagcacaatggcgagccgc 134
            |||||||||||||||||||| |||||||
Sbjct: 1245 atgctagtctagcacaatggtgagccgc 1218



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 147  cacctgcgatctcaaattattctgtagg 174
            |||||||||||| |||||||| ||||||
Sbjct: 1218 cacctgcgatctgaaattattttgtagg 1191
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>emb|AL928883.19| Mouse DNA sequence from clone RP23-60E18 on chromosome 2, complete
              sequence
          Length = 208470

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 323    tagggcatatatatctatatg 343
              |||||||||||||||||||||
Sbjct: 112846 tagggcatatatatctatatg 112826
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>gb|AC110907.7| Mus musculus chromosome 7, clone RP24-180J10, complete sequence
          Length = 179750

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 25    atgttgttattgtttataacagtt 48
             ||||||||||||||||||| ||||
Sbjct: 30924 atgttgttattgtttataatagtt 30947
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>gb|AC121862.3| Mus musculus BAC clone RP24-110E10 from chromosome 14, complete
             sequence
          Length = 178501

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   tgggggttcttgggacggta 219
             ||||||||||||||||||||
Sbjct: 64373 tgggggttcttgggacggta 64392
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>emb|CR847570.9| Zebrafish DNA sequence from clone DKEY-29M9 in linkage group 3,
             complete sequence
          Length = 124104

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    tgttgttattgtttataaca 45
             ||||||||||||||||||||
Sbjct: 74620 tgttgttattgtttataaca 74639
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>gb|AC136740.10| Mus musculus chromosome 7, clone RP23-137A24, complete sequence
          Length = 219863

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 25     atgttgttattgtttataacagtt 48
              ||||||||||||||||||| ||||
Sbjct: 193770 atgttgttattgtttataatagtt 193793
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>emb|AL590731.12| Human DNA sequence from clone RP11-149M6 on chromosome 6, complete
             sequence
          Length = 149389

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 246   ctccagcgccatgttgaactgtga 269
             ||||| ||||||||||||||||||
Sbjct: 28127 ctccaccgccatgttgaactgtga 28104
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>emb|AL450163.12| Human DNA sequence from clone RP11-384L19 on chromosome 1 Contains part
             of the gene for C-terminal PDZ domain ligand of neuronal
             nitric oxide synthase (CAPON), complete sequence
          Length = 208408

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 26    tgttgttattgtttataacagtta 49
             |||||||||||||||||| |||||
Sbjct: 15349 tgttgttattgtttataatagtta 15326
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>emb|BX769175.12| Zebrafish DNA sequence from clone DKEY-229K5 in linkage group 3,
             complete sequence
          Length = 154794

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    tgttgttattgtttataaca 45
             ||||||||||||||||||||
Sbjct: 44123 tgttgttattgtttataaca 44142
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>emb|AL161583.2|ATCHRIV79 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 79
          Length = 199536

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 329    atatatatctatatgcatcttact 352
              |||||||| |||||||||||||||
Sbjct: 125168 atatatatatatatgcatcttact 125191
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>emb|AL035678.1|ATF17M5 Arabidopsis thaliana DNA chromosome 4, BAC clone F17M5 (ESSA project)
          Length = 96475

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 329   atatatatctatatgcatcttact 352
             |||||||| |||||||||||||||
Sbjct: 60389 atatatatatatatgcatcttact 60412
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>dbj|AK155714.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F730208F19
           product:unclassifiable, full insert sequence
          Length = 1016

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 25  atgttgttattgtttataacagtt 48
           ||||||||||||||||||| ||||
Sbjct: 715 atgttgttattgtttataatagtt 692
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>gb|AC090666.6| Homo sapiens chromosome 18, clone RP11-116K4, complete sequence
          Length = 185255

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    atgttgttattgtttataac 44
             ||||||||||||||||||||
Sbjct: 85341 atgttgttattgtttataac 85360
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>gb|AC122427.6| Mus musculus BAC clone RP24-175C2 from chromosome 1, complete sequence
          Length = 180773

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 327   gcatatatatctatatgcat 346
             ||||||||||||||||||||
Sbjct: 54435 gcatatatatctatatgcat 54416
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>emb|BX942841.12| Zebrafish DNA sequence from clone CH211-59D15 in linkage group 20,
              complete sequence
          Length = 202032

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 276    tcatgaagtgtacacaaaag 295
              ||||||||||||||||||||
Sbjct: 130968 tcatgaagtgtacacaaaag 130949
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>gb|AC113278.15| Mus musculus chromosome 3, clone RP23-387I7, complete sequence
          Length = 180681

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    aatgttgttattgtttataa 43
             ||||||||||||||||||||
Sbjct: 56618 aatgttgttattgtttataa 56599
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>emb|AL935192.10| Zebrafish DNA sequence from clone CH211-252B2, complete sequence
          Length = 192649

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    tgttgttattgtttataaca 45
             ||||||||||||||||||||
Sbjct: 81192 tgttgttattgtttataaca 81211


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,693,595
Number of Sequences: 3902068
Number of extensions: 2693595
Number of successful extensions: 67381
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67347
Number of HSP's gapped (non-prelim): 34
length of query: 356
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 334
effective length of database: 17,147,199,772
effective search space: 5727164723848
effective search space used: 5727164723848
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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