>GPC5D_HUMAN (Q9NZD1) G-protein coupled receptor family C group 5 member D|
          Length = 345

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -3

Query: 445 LATSVTFMLSTM*LFMQSEWLCFESYNLSAPRWFPLVGILFEHC--CLLLSSRIVVYFSR 272
           L T + F+LS + LF  +     E    +AP  + L G+LF  C  CLL  +  +V   R
Sbjct: 60  LPTQLLFLLSVLGLFGLAFAFIIELNQQTAPVRYFLFGVLFALCFSCLLAHASNLVKLVR 119

Query: 271 GTI 263
           G +
Sbjct: 120 GCV 122

>NEF_HV2D2 (P15829) Nef protein (Negative factor) (F-protein) (3'ORF)|
          Length = 239

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 13/17 (76%), Positives = 13/17 (76%)
 Frame = -3

Query: 217 IGGSTLIWQFTSDLAYD 167
           I G TLIWQF S LAYD
Sbjct: 189 IHGETLIWQFDSLLAYD 205

>CATM_ACIAD (P07774) HTH-type transcriptional regulator catM (Cat operon|
           transcriptional regulator)
          Length = 303

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 18  HNFNLFSTDTVCLPISIN-PILVHPAKQKSNFSTIDEITFRSL 143
           H+ N F+   V L   I+ P+L++P  QK NF+T  +  F  L
Sbjct: 172 HHLNQFAATGVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTEL 214

>MANB_MYCGE (P47299) Phosphomannomutase (EC 5.4.2.8) (PMM)|
          Length = 550

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
 Frame = -2

Query: 272 WYHLTSTGRNAATTQKQVNWRKYSDMAVHVRFSLRYL-----KRYC*AK*SKGDFIYRTK 108
           W++ +     A T   ++N + +    +   F   YL     KRY       G F++RT 
Sbjct: 316 WHYFSGNETGAITAYYKLNHKVFKSPYIVSTFVSTYLVNKIAKRY-------GAFVHRTN 368

Query: 107 IGFLFCGMYQN 75
           +GF + G   N
Sbjct: 369 VGFKYIGQAIN 379

>LEU3_PSEF5 (Q4KF05) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM|
           dehydrogenase) (IMDH) (3-IPM-DH)
          Length = 360

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 148 EQSDLKVISSIVLKLDFCFAGCTKIGLIEIGKHTVSVLNKL 26
           EQ+  +V+   +   D   AGCTK+G  E+G   V+ L  L
Sbjct: 320 EQAVSRVLDQGLRTGDIWSAGCTKVGTQEMGDAVVAALRNL 360

>ATG1_CANGA (Q6FL58) Serine/threonine-protein kinase ATG1 (EC 2.7.11.1)|
           (Autophagy-related protein 1)
          Length = 942

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 442 ATSVTFMLSTM*LFMQSEWLCFESYNLSAPRWFPLVGILFEHCC 311
           +TS+   L    L+M  E L ++ YN  A  W  +  +LFE CC
Sbjct: 207 STSLAETLCGSPLYMAPEILNYQKYNAKADLW-SVGTVLFEMCC 249

>BRNQ_CORGL (O06754) Branched-chain amino acid transport system carrier protein|
           (Branched-chain amino acid uptake carrier)
          Length = 426

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = -2

Query: 416 YHVTVHAK*MVMFRV-------VQSVSAPLVSFSWNFIRALLFASLVKNCCLLLSWYHL 261
           YHV      ++ F V       V +V+AP++SF +     L+F SL++     L W +L
Sbjct: 302 YHVWATVFALISFGVATMGLDTVLAVAAPVISFIYPSAITLVFLSLIEPLLFRLKWTYL 360


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,363,991
Number of Sequences: 219361
Number of extensions: 1159256
Number of successful extensions: 2714
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2713
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)