ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009037.1| Triticum aestivum clone wdk5c.pk0001.d10:fis, ful... 149 9e-33
2gb|AC164556.2| Mus musculus BAC clone RP23-334L9 from chromosome... 42 1.5
3ref|NM_001012525.1| Gallus gallus fibroblast growth factor 7 (ke... 42 1.5
4emb|CR354361.1| Gallus gallus finished cDNA, clone ChEST537f11 42 1.5
5gb|AC010747.10| Homo sapiens BAC clone RP11-555H9 from 2, comple... 42 1.5
6dbj|AB193566.1| Gallus gallus Fgf7 mRNA for Fibroblast growth fa... 42 1.5
7emb|BX929277.1| Gallus gallus finished cDNA, clone ChEST984o1 42 1.5
8gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
9gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
10ref|XM_720055.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 6.1
11gb|AC137877.6| Mus musculus chromosome 10, clone RP23-72A1, comp... 40 6.1
12gb|AC153529.7| Mus musculus 10 BAC RP23-239G23 (Roswell Park Can... 40 6.1
13emb|CR388368.8| Zebrafish DNA sequence from clone DKEY-21E5 in l... 40 6.1
14gb|AC138218.15| Mus musculus chromosome 1, clone RP23-387H2, com... 40 6.1
15emb|AL772227.5| Mouse DNA sequence from clone RP23-1O16 on chrom... 40 6.1
16gb|AC002339.3| Arabidopsis thaliana chromosome 2 clone T11A7 map... 40 6.1
17gb|AC100782.2| Homo sapiens, clone RP11-300E4, complete sequence 40 6.1
18dbj|AK033531.1| Mus musculus adult male colon cDNA, RIKEN full-l... 40 6.1
19gb|AC022274.5|AC022274 Homo sapiens BAC clone RP11-697M17 from 8... 40 6.1
20dbj|AK036920.1| Mus musculus adult female vagina cDNA, RIKEN ful... 40 6.1
21dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
22gb|AC068538.8| Homo sapiens BAC clone RP11-141G4 from 2, complet... 40 6.1
23dbj|BS000172.1| Pan troglodytes chromosome 22 clone:PTB-016G04, ... 40 6.1
24emb|BX649441.5| Zebrafish DNA sequence from clone DKEYP-3B1 in l... 40 6.1
25gb|AC132867.6| Mus musculus chromosome 1, clone RP24-388I23, com... 40 6.1
26emb|CR854957.11| Zebrafish DNA sequence from clone DKEY-211C10 i... 40 6.1

>gb|BT009037.1| Triticum aestivum clone wdk5c.pk0001.d10:fis, full insert mRNA
            sequence
          Length = 1200

 Score =  149 bits (75), Expect = 9e-33
 Identities = 102/110 (92%), Gaps = 2/110 (1%)
 Strand = Plus / Minus

                                                                        
Query: 343  gaaaccaacggggcgctgacagattgtacgactcgaaacataaccattcactttgcatga 402
            |||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 1147 gaaaccaacggaacgctgacagattgtacgactccaaacacaaccattcactttgcatga 1088

                                                              
Query: 403  aca--gtcacatggtactaagcataaacgtaactgaagttgccaatgcat 450
            |||  |||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 1087 acagtgtcacatggtactaagcataaacgtaaaggaagttgccaatgcat 1038



to top

>gb|AC164556.2| Mus musculus BAC clone RP23-334L9 from chromosome 12, complete sequence
          Length = 182308

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 124   aaatcacctttagatcacttt 144
             |||||||||||||||||||||
Sbjct: 47545 aaatcacctttagatcacttt 47525



to top

>ref|NM_001012525.1| Gallus gallus fibroblast growth factor 7 (keratinocyte growth
           factor) (FGF7), mRNA
          Length = 681

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 297 gacgagagaagcaaacaacaa 317
           |||||||||||||||||||||
Sbjct: 335 gacgagagaagcaaacaacaa 355



to top

>emb|CR354361.1| Gallus gallus finished cDNA, clone ChEST537f11
          Length = 1390

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 297 gacgagagaagcaaacaacaa 317
           |||||||||||||||||||||
Sbjct: 747 gacgagagaagcaaacaacaa 767



to top

>gb|AC010747.10| Homo sapiens BAC clone RP11-555H9 from 2, complete sequence
          Length = 159512

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 17    acacaattttaatttgttcag 37
             |||||||||||||||||||||
Sbjct: 60580 acacaattttaatttgttcag 60600



to top

>dbj|AB193566.1| Gallus gallus Fgf7 mRNA for Fibroblast growth factor 7, complete
           cds
          Length = 681

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 297 gacgagagaagcaaacaacaa 317
           |||||||||||||||||||||
Sbjct: 335 gacgagagaagcaaacaacaa 355



to top

>emb|BX929277.1| Gallus gallus finished cDNA, clone ChEST984o1
          Length = 608

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 297 gacgagagaagcaaacaacaa 317
           |||||||||||||||||||||
Sbjct: 340 gacgagagaagcaaacaacaa 360



to top

>gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0001A07,
              complete sequence
          Length = 164898

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     acacaattttaatttgttca 36
              ||||||||||||||||||||
Sbjct: 118276 acacaattttaatttgttca 118295



to top

>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0072C16, complete sequence
          Length = 159525

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    acacaattttaatttgttca 36
             ||||||||||||||||||||
Sbjct: 17681 acacaattttaatttgttca 17700



to top

>ref|XM_720055.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04800)
            partial mRNA
          Length = 9116

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 1    gcaacaaataatcgatacacaatt 24
            |||| |||||||||||||||||||
Sbjct: 4372 gcaataaataatcgatacacaatt 4395



to top

>gb|AC137877.6| Mus musculus chromosome 10, clone RP23-72A1, complete sequence
          Length = 172812

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     tacacaattttaatttgttc 35
              ||||||||||||||||||||
Sbjct: 161097 tacacaattttaatttgttc 161078



to top

>gb|AC153529.7| Mus musculus 10 BAC RP23-239G23 (Roswell Park Cancer Institute
            (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 153084

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 16   tacacaattttaatttgttc 35
            ||||||||||||||||||||
Sbjct: 1788 tacacaattttaatttgttc 1769



to top

>emb|CR388368.8| Zebrafish DNA sequence from clone DKEY-21E5 in linkage group 5,
             complete sequence
          Length = 85762

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    acacaattttaatttgttca 36
             ||||||||||||||||||||
Sbjct: 20692 acacaattttaatttgttca 20673



to top

>gb|AC138218.15| Mus musculus chromosome 1, clone RP23-387H2, complete sequence
          Length = 188661

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    caaaacaaaaatccaatttt 110
             ||||||||||||||||||||
Sbjct: 59178 caaaacaaaaatccaatttt 59197



to top

>emb|AL772227.5| Mouse DNA sequence from clone RP23-1O16 on chromosome 11 Contains two
             novel genes, the 5' end of the gene for a novel protein
             similar to human Class V ATPase type 10B (ATP10B)
             (9030605H24Rik) and the 3' end of a novel gene, complete
             sequence
          Length = 178001

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   gagagaagcaaacaacaatg 319
             ||||||||||||||||||||
Sbjct: 76600 gagagaagcaaacaacaatg 76581



to top

>gb|AC002339.3| Arabidopsis thaliana chromosome 2 clone T11A7 map CIC11C08, complete
             sequence
          Length = 91071

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    aaaatccaattttagtacga 117
             ||||||||||||||||||||
Sbjct: 84816 aaaatccaattttagtacga 84797



to top

>gb|AC100782.2| Homo sapiens, clone RP11-300E4, complete sequence
          Length = 185123

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    caaaacaaaaatccaatttt 110
             ||||||||||||||||||||
Sbjct: 30643 caaaacaaaaatccaatttt 30662



to top

>dbj|AK033531.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched
            library, clone:9030605H24 product:hypothetical Membrane
            all-alpha structure containing protein, full insert
            sequence
          Length = 3477

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  gagagaagcaaacaacaatg 319
            ||||||||||||||||||||
Sbjct: 1093 gagagaagcaaacaacaatg 1074



to top

>gb|AC022274.5|AC022274 Homo sapiens BAC clone RP11-697M17 from 8, complete sequence
          Length = 190701

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 91   caaaacaaaaatccaatttt 110
            ||||||||||||||||||||
Sbjct: 2586 caaaacaaaaatccaatttt 2567



to top

>dbj|AK036920.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
            library, clone:9930024M01 product:unclassifiable, full
            insert sequence
          Length = 2280

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  gagagaagcaaacaacaatg 319
            ||||||||||||||||||||
Sbjct: 1354 gagagaagcaaacaacaatg 1335



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 17      acacaattttaatttgttca 36
               ||||||||||||||||||||
Sbjct: 2923665 acacaattttaatttgttca 2923684



to top

>gb|AC068538.8| Homo sapiens BAC clone RP11-141G4 from 2, complete sequence
          Length = 173169

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 322   cgaataaaattccaactaaa 341
             ||||||||||||||||||||
Sbjct: 40755 cgaataaaattccaactaaa 40774



to top

>dbj|BS000172.1| Pan troglodytes chromosome 22 clone:PTB-016G04, map 22, complete
             sequences
          Length = 220133

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   ttgctcagcaataccgtttt 162
             ||||||||||||||||||||
Sbjct: 76137 ttgctcagcaataccgtttt 76156



to top

>emb|BX649441.5| Zebrafish DNA sequence from clone DKEYP-3B1 in linkage group 20, complete
              sequence
          Length = 114252

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     atacacaattttaatttgtt 34
              ||||||||||||||||||||
Sbjct: 105756 atacacaattttaatttgtt 105775



to top

>gb|AC132867.6| Mus musculus chromosome 1, clone RP24-388I23, complete sequence
          Length = 209151

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    caaaacaaaaatccaatttt 110
             ||||||||||||||||||||
Sbjct: 17860 caaaacaaaaatccaatttt 17879



to top

>emb|CR854957.11| Zebrafish DNA sequence from clone DKEY-211C10 in linkage group 16,
             complete sequence
          Length = 131039

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   gcggcattccttcctgtgct 257
             ||||||||||||||||||||
Sbjct: 78397 gcggcattccttcctgtgct 78416


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,382,162
Number of Sequences: 3902068
Number of extensions: 4382162
Number of successful extensions: 74577
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74509
Number of HSP's gapped (non-prelim): 67
length of query: 450
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 428
effective length of database: 17,147,199,772
effective search space: 7339001502416
effective search space used: 7339001502416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top