Clone Name | rbastl01d05 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009037.1| Triticum aestivum clone wdk5c.pk0001.d10:fis, full insert mRNA sequence Length = 1200 Score = 149 bits (75), Expect = 9e-33 Identities = 102/110 (92%), Gaps = 2/110 (1%) Strand = Plus / Minus Query: 343 gaaaccaacggggcgctgacagattgtacgactcgaaacataaccattcactttgcatga 402 ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 1147 gaaaccaacggaacgctgacagattgtacgactccaaacacaaccattcactttgcatga 1088 Query: 403 aca--gtcacatggtactaagcataaacgtaactgaagttgccaatgcat 450 ||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1087 acagtgtcacatggtactaagcataaacgtaaaggaagttgccaatgcat 1038
>gb|AC164556.2| Mus musculus BAC clone RP23-334L9 from chromosome 12, complete sequence Length = 182308 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 aaatcacctttagatcacttt 144 ||||||||||||||||||||| Sbjct: 47545 aaatcacctttagatcacttt 47525
>ref|NM_001012525.1| Gallus gallus fibroblast growth factor 7 (keratinocyte growth factor) (FGF7), mRNA Length = 681 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 297 gacgagagaagcaaacaacaa 317 ||||||||||||||||||||| Sbjct: 335 gacgagagaagcaaacaacaa 355
>emb|CR354361.1| Gallus gallus finished cDNA, clone ChEST537f11 Length = 1390 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 297 gacgagagaagcaaacaacaa 317 ||||||||||||||||||||| Sbjct: 747 gacgagagaagcaaacaacaa 767
>gb|AC010747.10| Homo sapiens BAC clone RP11-555H9 from 2, complete sequence Length = 159512 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 17 acacaattttaatttgttcag 37 ||||||||||||||||||||| Sbjct: 60580 acacaattttaatttgttcag 60600
>dbj|AB193566.1| Gallus gallus Fgf7 mRNA for Fibroblast growth factor 7, complete cds Length = 681 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 297 gacgagagaagcaaacaacaa 317 ||||||||||||||||||||| Sbjct: 335 gacgagagaagcaaacaacaa 355
>emb|BX929277.1| Gallus gallus finished cDNA, clone ChEST984o1 Length = 608 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 297 gacgagagaagcaaacaacaa 317 ||||||||||||||||||||| Sbjct: 340 gacgagagaagcaaacaacaa 360
>gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0001A07, complete sequence Length = 164898 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 acacaattttaatttgttca 36 |||||||||||||||||||| Sbjct: 118276 acacaattttaatttgttca 118295
>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0072C16, complete sequence Length = 159525 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 acacaattttaatttgttca 36 |||||||||||||||||||| Sbjct: 17681 acacaattttaatttgttca 17700
>ref|XM_720055.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04800) partial mRNA Length = 9116 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 gcaacaaataatcgatacacaatt 24 |||| ||||||||||||||||||| Sbjct: 4372 gcaataaataatcgatacacaatt 4395
>gb|AC137877.6| Mus musculus chromosome 10, clone RP23-72A1, complete sequence Length = 172812 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tacacaattttaatttgttc 35 |||||||||||||||||||| Sbjct: 161097 tacacaattttaatttgttc 161078
>gb|AC153529.7| Mus musculus 10 BAC RP23-239G23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 153084 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 tacacaattttaatttgttc 35 |||||||||||||||||||| Sbjct: 1788 tacacaattttaatttgttc 1769
>emb|CR388368.8| Zebrafish DNA sequence from clone DKEY-21E5 in linkage group 5, complete sequence Length = 85762 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 acacaattttaatttgttca 36 |||||||||||||||||||| Sbjct: 20692 acacaattttaatttgttca 20673
>gb|AC138218.15| Mus musculus chromosome 1, clone RP23-387H2, complete sequence Length = 188661 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 caaaacaaaaatccaatttt 110 |||||||||||||||||||| Sbjct: 59178 caaaacaaaaatccaatttt 59197
>emb|AL772227.5| Mouse DNA sequence from clone RP23-1O16 on chromosome 11 Contains two novel genes, the 5' end of the gene for a novel protein similar to human Class V ATPase type 10B (ATP10B) (9030605H24Rik) and the 3' end of a novel gene, complete sequence Length = 178001 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 gagagaagcaaacaacaatg 319 |||||||||||||||||||| Sbjct: 76600 gagagaagcaaacaacaatg 76581
>gb|AC002339.3| Arabidopsis thaliana chromosome 2 clone T11A7 map CIC11C08, complete sequence Length = 91071 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 aaaatccaattttagtacga 117 |||||||||||||||||||| Sbjct: 84816 aaaatccaattttagtacga 84797
>gb|AC100782.2| Homo sapiens, clone RP11-300E4, complete sequence Length = 185123 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 caaaacaaaaatccaatttt 110 |||||||||||||||||||| Sbjct: 30643 caaaacaaaaatccaatttt 30662
>dbj|AK033531.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched library, clone:9030605H24 product:hypothetical Membrane all-alpha structure containing protein, full insert sequence Length = 3477 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 gagagaagcaaacaacaatg 319 |||||||||||||||||||| Sbjct: 1093 gagagaagcaaacaacaatg 1074
>gb|AC022274.5|AC022274 Homo sapiens BAC clone RP11-697M17 from 8, complete sequence Length = 190701 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 caaaacaaaaatccaatttt 110 |||||||||||||||||||| Sbjct: 2586 caaaacaaaaatccaatttt 2567
>dbj|AK036920.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched library, clone:9930024M01 product:unclassifiable, full insert sequence Length = 2280 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 gagagaagcaaacaacaatg 319 |||||||||||||||||||| Sbjct: 1354 gagagaagcaaacaacaatg 1335
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 acacaattttaatttgttca 36 |||||||||||||||||||| Sbjct: 2923665 acacaattttaatttgttca 2923684
>gb|AC068538.8| Homo sapiens BAC clone RP11-141G4 from 2, complete sequence Length = 173169 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 cgaataaaattccaactaaa 341 |||||||||||||||||||| Sbjct: 40755 cgaataaaattccaactaaa 40774
>dbj|BS000172.1| Pan troglodytes chromosome 22 clone:PTB-016G04, map 22, complete sequences Length = 220133 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 ttgctcagcaataccgtttt 162 |||||||||||||||||||| Sbjct: 76137 ttgctcagcaataccgtttt 76156
>emb|BX649441.5| Zebrafish DNA sequence from clone DKEYP-3B1 in linkage group 20, complete sequence Length = 114252 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 atacacaattttaatttgtt 34 |||||||||||||||||||| Sbjct: 105756 atacacaattttaatttgtt 105775
>gb|AC132867.6| Mus musculus chromosome 1, clone RP24-388I23, complete sequence Length = 209151 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 caaaacaaaaatccaatttt 110 |||||||||||||||||||| Sbjct: 17860 caaaacaaaaatccaatttt 17879
>emb|CR854957.11| Zebrafish DNA sequence from clone DKEY-211C10 in linkage group 16, complete sequence Length = 131039 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 gcggcattccttcctgtgct 257 |||||||||||||||||||| Sbjct: 78397 gcggcattccttcctgtgct 78416 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,382,162 Number of Sequences: 3902068 Number of extensions: 4382162 Number of successful extensions: 74577 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74509 Number of HSP's gapped (non-prelim): 67 length of query: 450 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 428 effective length of database: 17,147,199,772 effective search space: 7339001502416 effective search space used: 7339001502416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)