ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
2dbj|AP004194.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
3dbj|AP003760.4| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
4dbj|AK102266.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.002
5ref|XM_757370.1| Ustilago maydis 521 hypothetical protein (UM063... 42 1.6
6gb|AC155715.24| Mus musculus 10 BAC RP24-118H2 (Roswell Park Can... 42 1.6
7ref|XM_416666.1| PREDICTED: Gallus gallus LOC418456 (LOC418456),... 40 6.3
8gb|AC144794.2| Mus musculus BAC clone RP24-463B6 from chromosome... 40 6.3
9gb|DP000012.1| Macropus eugenii target 1 genomic scaffold 40 6.3
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.3
11emb|AL356865.19| Human DNA sequence from clone RP11-36N22 on chr... 40 6.3
12gb|AC026672.44| Homo sapiens 12 BAC RP11-876K22 (Roswell Park Ca... 40 6.3
13gb|AE008899.1| Salmonella typhimurium LT2, section 203 of 220 of... 40 6.3
14emb|AL627282.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 6.3
15emb|AJ576316.1|STY576316 Salmonella typhimurium Salmonella Patho... 40 6.3
16gb|AF293978.1|AF293978 Macropus giganteus cystic fibrosis transm... 40 6.3
17gb|AC158440.3| Macropus eugenii clone ME_KBa-330E9, complete seq... 40 6.3
18dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
19gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
20gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 40 6.3
21gb|AC145042.3| Macropus eugenii clone ME_KBa-289E24, complete se... 40 6.3
22dbj|AK103484.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
23gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 6.3
24gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 40 6.3
25dbj|AB050609.1| Branchiostoma belcheri Amphiop5 mRNA for opsin, ... 40 6.3
26emb|BX005081.6| Zebrafish DNA sequence from clone CH211-69M16 in... 40 6.3
27emb|AL929330.14| Zebrafish DNA sequence from clone CH211-26A17, ... 40 6.3
28gb|AF060869.1|AF060869 Salmonella typhimurium excision nuclease ... 40 6.3
29emb|AL713863.7| Mouse DNA sequence from clone RP23-330I16 on chr... 40 6.3 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 74/86 (86%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                            
Query: 159      ttaattgagttgtaatacataatacagtgagatttgagaaggcatcatcattcatctagt 218
                ||||||||| | |||||||||||||| ||||||||||||| ||||||    ||| |||||
Sbjct: 27356373 ttaattgagctataatacataatacaatgagatttgagaaagcatcacggatcagctagt 27356314

                                          
Query: 219      tctacagattccaacatcagtaacag 244
                | || ||||||||| |||||||||||
Sbjct: 27356313 t-taaagattccaatatcagtaacag 27356289



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                      
Query: 356      cataaccgataaaggagatttatttgcagaaggctagc 393
                ||||||| |||||||  |||||||||||||||||||||
Sbjct: 27356176 cataaccaataaaggcaatttatttgcagaaggctagc 27356139
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>dbj|AP004194.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0014E08
          Length = 144219

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 74/86 (86%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                         
Query: 159   ttaattgagttgtaatacataatacagtgagatttgagaaggcatcatcattcatctagt 218
             ||||||||| | |||||||||||||| ||||||||||||| ||||||    ||| |||||
Sbjct: 39268 ttaattgagctataatacataatacaatgagatttgagaaagcatcacggatcagctagt 39209

                                       
Query: 219   tctacagattccaacatcagtaacag 244
             | || ||||||||| |||||||||||
Sbjct: 39208 t-taaagattccaatatcagtaacag 39184



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 356   cataaccgataaaggagatttatttgcagaaggctagc 393
             ||||||| |||||||  |||||||||||||||||||||
Sbjct: 39071 cataaccaataaaggcaatttatttgcagaaggctagc 39034
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>dbj|AP003760.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBb0063G05
          Length = 182681

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 74/86 (86%), Gaps = 1/86 (1%)
 Strand = Plus / Minus

                                                                          
Query: 159    ttaattgagttgtaatacataatacagtgagatttgagaaggcatcatcattcatctagt 218
              ||||||||| | |||||||||||||| ||||||||||||| ||||||    ||| |||||
Sbjct: 136890 ttaattgagctataatacataatacaatgagatttgagaaagcatcacggatcagctagt 136831

                                        
Query: 219    tctacagattccaacatcagtaacag 244
              | || ||||||||| |||||||||||
Sbjct: 136830 t-taaagattccaatatcagtaacag 136806



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                    
Query: 356    cataaccgataaaggagatttatttgcagaaggctagc 393
              ||||||| |||||||  |||||||||||||||||||||
Sbjct: 136693 cataaccaataaaggcaatttatttgcagaaggctagc 136656
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>dbj|AK102266.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088N13, full
            insert sequence
          Length = 3213

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 356  cataaccgataaaggagatttatttgcagaaggctagc 393
            ||||||| |||||||  |||||||||||||||||||||
Sbjct: 3051 cataaccaataaaggcaatttatttgcagaaggctagc 3014
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>ref|XM_757370.1| Ustilago maydis 521 hypothetical protein (UM06316.1) partial mRNA
          Length = 2391

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 417  agcagaagacttgctaatctt 437
            |||||||||||||||||||||
Sbjct: 1987 agcagaagacttgctaatctt 2007
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>gb|AC155715.24| Mus musculus 10 BAC RP24-118H2 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 174860

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 415    gaagcagaagacttgctaatcttgt 439
              ||||||||||| |||||||||||||
Sbjct: 136177 gaagcagaagagttgctaatcttgt 136153
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>ref|XM_416666.1| PREDICTED: Gallus gallus LOC418456 (LOC418456), mRNA
          Length = 773

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 373 atttatttgcagaaggctag 392
           ||||||||||||||||||||
Sbjct: 756 atttatttgcagaaggctag 737
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>gb|AC144794.2| Mus musculus BAC clone RP24-463B6 from chromosome 18, complete sequence
          Length = 152588

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    tatttgctcattacaaagca 80
             ||||||||||||||||||||
Sbjct: 57662 tatttgctcattacaaagca 57681
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>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 442     tatgtacagaactggaagtg 461
               ||||||||||||||||||||
Sbjct: 1634521 tatgtacagaactggaagtg 1634540
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 23       cagcactcacaattatgcag 42
                ||||||||||||||||||||
Sbjct: 12952679 cagcactcacaattatgcag 12952660
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>emb|AL356865.19| Human DNA sequence from clone RP11-36N22 on chromosome 10 Contains a
              pseudogene similar to part of solute carrier family 25,
              (mitochondrial carrier), member 18 (SLC25A18), the GPR10
              gene for G protein-coupled receptor 10 (GR3, PrRPR), a
              translocase of outer mitochondrial membrane 22 homolog
              (yeast) (TOM22) (TOMM22) pseudogene and one CpG island,
              complete sequence
          Length = 156604

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 382    cagaaggctagcatgaagtt 401
              ||||||||||||||||||||
Sbjct: 101610 cagaaggctagcatgaagtt 101629
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>gb|AC026672.44| Homo sapiens 12 BAC RP11-876K22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 230392

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 165    gagttgtaatacataatacagtga 188
              ||||||||| ||||||||||||||
Sbjct: 161309 gagttgtaaaacataatacagtga 161332
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>gb|AE008899.1| Salmonella typhimurium LT2, section 203 of 220 of the complete
           genome
          Length = 24125

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 159 ttaattgagttgtaatacataata 182
           ||||||||||||| ||||||||||
Sbjct: 682 ttaattgagttgtcatacataata 659
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>emb|AL627282.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
             complete chromosome; segment 18/20
          Length = 234050

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 159   ttaattgagttgtaatacataata 182
             ||||||||||||| ||||||||||
Sbjct: 85120 ttaattgagttgtcatacataata 85097
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>emb|AJ576316.1|STY576316 Salmonella typhimurium Salmonella Pathogenicity Island 4 (siiABCDEF
            genes)
          Length = 24660

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 159  ttaattgagttgtaatacataata 182
            ||||||||||||| ||||||||||
Sbjct: 1072 ttaattgagttgtcatacataata 1049
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>gb|AF293978.1|AF293978 Macropus giganteus cystic fibrosis transmembrane conductance
           regulator (CFTR) gene, partial cds
          Length = 672

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 442 tatgtacagaactggaagtg 461
           ||||||||||||||||||||
Sbjct: 555 tatgtacagaactggaagtg 574
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>gb|AC158440.3| Macropus eugenii clone ME_KBa-330E9, complete sequence
          Length = 101335

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 442 tatgtacagaactggaagtg 461
           ||||||||||||||||||||
Sbjct: 740 tatgtacagaactggaagtg 759
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 23       cagcactcacaattatgcag 42
                ||||||||||||||||||||
Sbjct: 12949454 cagcactcacaattatgcag 12949435
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>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0006D11, complete sequence
          Length = 176637

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    cagcactcacaattatgcag 42
             ||||||||||||||||||||
Sbjct: 30377 cagcactcacaattatgcag 30358
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 159     ttaattgagttgtaatacataata 182
               ||||||||||||| ||||||||||
Sbjct: 4232904 ttaattgagttgtcatacataata 4232881
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>gb|AC145042.3| Macropus eugenii clone ME_KBa-289E24, complete sequence
          Length = 161181

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 442    tatgtacagaactggaagtg 461
              ||||||||||||||||||||
Sbjct: 157502 tatgtacagaactggaagtg 157521
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>dbj|AK103484.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033130L04, full
           insert sequence
          Length = 1683

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 21  aacagcactcacaattatgc 40
           ||||||||||||||||||||
Sbjct: 502 aacagcactcacaattatgc 483
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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 159     ttaattgagttgtaatacataata 182
               ||||||||||||| ||||||||||
Sbjct: 4307770 ttaattgagttgtcatacataata 4307747
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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 159     ttaattgagttgtaatacataata 182
               ||||||||||||| ||||||||||
Sbjct: 4412601 ttaattgagttgtcatacataata 4412578
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>dbj|AB050609.1| Branchiostoma belcheri Amphiop5 mRNA for opsin, complete cds
          Length = 1515

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 134 gtgaaccttgtttcaccttg 153
           ||||||||||||||||||||
Sbjct: 922 gtgaaccttgtttcaccttg 903
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>emb|BX005081.6| Zebrafish DNA sequence from clone CH211-69M16 in linkage group 7,
            complete sequence
          Length = 168607

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 159  ttaattgagttgtaatacataatacagt 186
            ||||||||| || |||||||||||||||
Sbjct: 2673 ttaattgaggtgaaatacataatacagt 2646
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>emb|AL929330.14| Zebrafish DNA sequence from clone CH211-26A17, complete sequence
          Length = 176635

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   ctgaatgtaacactcaaacc 122
             ||||||||||||||||||||
Sbjct: 19030 ctgaatgtaacactcaaacc 19049
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>gb|AF060869.1|AF060869 Salmonella typhimurium excision nuclease UvrA (uvrA) gene, partial
            cds; single-strand binding protein (ssb) gene, complete
            cds; tRNA-Thr gene, complete sequence; pathogenicity
            island SPI-4 operon, complete sequence; yjcB gene,
            complete cds; and yjcC gene, partial cds
          Length = 27290

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 159  ttaattgagttgtaatacataata 182
            ||||||||||||| ||||||||||
Sbjct: 2251 ttaattgagttgtcatacataata 2228
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>emb|AL713863.7| Mouse DNA sequence from clone RP23-330I16 on chromosome X, complete
             sequence
          Length = 203422

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 104   tgaatgtaacactcaaacctgcta 127
             ||||| ||||||||||||||||||
Sbjct: 27838 tgaatataacactcaaacctgcta 27815


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,249,930
Number of Sequences: 3902068
Number of extensions: 4249930
Number of successful extensions: 82692
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82531
Number of HSP's gapped (non-prelim): 158
length of query: 468
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 446
effective length of database: 17,147,199,772
effective search space: 7647651098312
effective search space used: 7647651098312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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