ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC135502.4| Oryza sativa chromosome 3 BAC OSJNBb0085A04 genom... 80 7e-12
2gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genom... 80 7e-12
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 80 7e-12
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 80 7e-12
5dbj|AK121995.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 7e-12
6gb|AF272758.1|AF272758 Zea mays kinesin heavy chain (KIN13) mRNA... 46 0.10
7gb|AC137065.26| Medicago truncatula clone mth2-29h7, complete se... 44 0.40
8emb|CR962134.2| Medicago truncatula chromosome 5 clone mte1-40n1... 42 1.6
9gb|DQ458594.1| Pseudomonas sp. P97.6 DNA gyrase subunit B (gyrB)... 42 1.6
10gb|DQ458582.1| Pseudomonas sp. P97.38 DNA gyrase subunit B (gyrB... 42 1.6
11gb|AC091666.4| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
12gb|AC155255.3| Mus musculus BAC clone RP24-143P3 from chromosome... 42 1.6
13gb|AC123594.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
14dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
15gb|AC130460.2| Homo sapiens chromosome 16 clone CTA-485G10, comp... 42 1.6
16gb|AC084797.5| Homo sapiens chromosome 16 clone RP11-62O3, compl... 42 1.6
17emb|BX005342.14| Zebrafish DNA sequence from clone DKEY-81P7, co... 42 1.6
18emb|CR352257.8| Zebrafish DNA sequence from clone CH211-261B21 i... 42 1.6
19gb|AY449459.1| Oikopleura dioica clone BACOIKO003 5xk14, complet... 42 1.6
20gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
21dbj|AB039466.1| Pseudomonas corrugata gyrB gene for DNA gyrase s... 42 1.6
22ref|XM_468111.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.2
23gb|AC133861.5| Oryza sativa chromosome 3 BAC OSJNBb0031F05 genom... 40 6.2
24ref|XM_742381.1| Aspergillus fumigatus Af293 integral membrane p... 40 6.2
25emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 6.2
26ref|XM_808343.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.2
27gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
28gb|BC039504.2| Homo sapiens cDNA clone IMAGE:5561426, partial cds 40 6.2
29emb|AL160152.20| Human DNA sequence from clone RP11-360H15 on ch... 40 6.2
30gb|AY245373.1| Iris fulva clone FR3-6 IRRE retrotransposon, part... 40 6.2
31emb|AJ580915.1|SPA580915 Streptomyces parvulus Tu4055 cluster fo... 40 6.2
32gb|AC027118.9| Homo sapiens chromosome 10 clone RP11-573I11, com... 40 6.2
33dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
34dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
35dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
36dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
37dbj|AP004002.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
38dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
39gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2 
>gb|AC135502.4| Oryza sativa chromosome 3 BAC OSJNBb0085A04 genomic sequence,
           complete sequence
          Length = 132292

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                       
Query: 387 cgctctcgtggcggtagaatccctccagggccgactccggcagccggctctcggccaggt 446
           ||||||| || |||||||||||| |||| || ||||||||||||||||| || || ||| 
Sbjct: 458 cgctctcctgccggtagaatccccccagtgctgactccggcagccggctgtccgcaagga 517

                           
Query: 447 agtgcttcatcgtctc 462
           ||||||||||||||||
Sbjct: 518 agtgcttcatcgtctc 533



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                          
Query: 146 gtttcctaattgtcaaccaggctcagttgac 176
           ||||||||||||||||||||||||| |||||
Sbjct: 309 gtttcctaattgtcaaccaggctcaattgac 339
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>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete
              sequence
          Length = 190055

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                          
Query: 387    cgctctcgtggcggtagaatccctccagggccgactccggcagccggctctcggccaggt 446
              ||||||| || |||||||||||| |||| || ||||||||||||||||| || || ||| 
Sbjct: 188475 cgctctcctgccggtagaatccccccagtgctgactccggcagccggctgtccgcaagga 188534

                              
Query: 447    agtgcttcatcgtctc 462
              ||||||||||||||||
Sbjct: 188535 agtgcttcatcgtctc 188550



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                             
Query: 146    gtttcctaattgtcaaccaggctcagttgac 176
              ||||||||||||||||||||||||| |||||
Sbjct: 188326 gtttcctaattgtcaaccaggctcaattgac 188356
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                            
Query: 387      cgctctcgtggcggtagaatccctccagggccgactccggcagccggctctcggccaggt 446
                ||||||| || |||||||||||| |||| || ||||||||||||||||| || || ||| 
Sbjct: 21495564 cgctctcctgccggtagaatccccccagtgctgactccggcagccggctgtccgcaagga 21495623

                                
Query: 447      agtgcttcatcgtctc 462
                ||||||||||||||||
Sbjct: 21495624 agtgcttcatcgtctc 21495639



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                               
Query: 146      gtttcctaattgtcaaccaggctcagttgac 176
                ||||||||||||||||||||||||| |||||
Sbjct: 21495415 gtttcctaattgtcaaccaggctcaattgac 21495445



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 352      ggcggtggacggagcatggg 371
                ||||||||||||||||||||
Sbjct: 18037513 ggcggtggacggagcatggg 18037532
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                            
Query: 387      cgctctcgtggcggtagaatccctccagggccgactccggcagccggctctcggccaggt 446
                ||||||| || |||||||||||| |||| || ||||||||||||||||| || || ||| 
Sbjct: 21488593 cgctctcctgccggtagaatccccccagtgctgactccggcagccggctgtccgcaagga 21488652

                                
Query: 447      agtgcttcatcgtctc 462
                ||||||||||||||||
Sbjct: 21488653 agtgcttcatcgtctc 21488668



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                               
Query: 146      gtttcctaattgtcaaccaggctcagttgac 176
                ||||||||||||||||||||||||| |||||
Sbjct: 21488444 gtttcctaattgtcaaccaggctcaattgac 21488474



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 352      ggcggtggacggagcatggg 371
                ||||||||||||||||||||
Sbjct: 18031054 ggcggtggacggagcatggg 18031073
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>dbj|AK121995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110A05, full
            insert sequence
          Length = 3726

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                        
Query: 387  cgctctcgtggcggtagaatccctccagggccgactccggcagccggctctcggccaggt 446
            ||||||| || |||||||||||| |||| || ||||||||||||||||| || || ||| 
Sbjct: 3406 cgctctcctgccggtagaatccccccagtgctgactccggcagccggctgtccgcaagga 3347

                            
Query: 447  agtgcttcatcgtctc 462
            ||||||||||||||||
Sbjct: 3346 agtgcttcatcgtctc 3331



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 146  gtttcctaattgtcaaccaggctcagttgac 176
            ||||||||||||||||||||||||| |||||
Sbjct: 3555 gtttcctaattgtcaaccaggctcaattgac 3525
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>gb|AF272758.1|AF272758 Zea mays kinesin heavy chain (KIN13) mRNA, partial cds
          Length = 2798

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 416  gccgactccggcagccggctctc 438
            |||||||||||||||||||||||
Sbjct: 2483 gccgactccggcagccggctctc 2461
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>gb|AC137065.26| Medicago truncatula clone mth2-29h7, complete sequence
          Length = 105004

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 93    tgaatcatcatagacatgtataaaaatcaa 122
             |||||||||||  |||||||||||||||||
Sbjct: 75058 tgaatcatcatttacatgtataaaaatcaa 75029
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>emb|CR962134.2| Medicago truncatula chromosome 5 clone mte1-40n1, COMPLETE SEQUENCE
          Length = 139651

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 195   aagcaatttagactttagagg 215
             |||||||||||||||||||||
Sbjct: 60799 aagcaatttagactttagagg 60779
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>gb|DQ458594.1| Pseudomonas sp. P97.6 DNA gyrase subunit B (gyrB) gene, partial cds
          Length = 545

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 246 cgtcgtcgccggtggtggcaa 266
           |||||||||||||||||||||
Sbjct: 162 cgtcgtcgccggtggtggcaa 182
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>gb|DQ458582.1| Pseudomonas sp. P97.38 DNA gyrase subunit B (gyrB) gene, partial
           cds
          Length = 539

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 246 cgtcgtcgccggtggtggcaa 266
           |||||||||||||||||||||
Sbjct: 156 cgtcgtcgccggtggtggcaa 176
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>gb|AC091666.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0078C13, complete sequence
          Length = 140553

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 346   gtggccggcggtggacggagc 366
             |||||||||||||||||||||
Sbjct: 44662 gtggccggcggtggacggagc 44642
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>gb|AC155255.3| Mus musculus BAC clone RP24-143P3 from chromosome 12, complete sequence
          Length = 201217

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 161   accaggctcagttgacttact 181
             |||||||||||||||||||||
Sbjct: 56586 accaggctcagttgacttact 56566
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>gb|AC123594.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            OSJNAb0078C13, complete sequence
          Length = 146538

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 346  gtggccggcggtggacggagc 366
            |||||||||||||||||||||
Sbjct: 6052 gtggccggcggtggacggagc 6072
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 346     gtggccggcggtggacggagc 366
               |||||||||||||||||||||
Sbjct: 9989293 gtggccggcggtggacggagc 9989313
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>gb|AC130460.2| Homo sapiens chromosome 16 clone CTA-485G10, complete sequence
          Length = 135347

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 108   atgtataaaaatcaagaaata 128
             |||||||||||||||||||||
Sbjct: 14596 atgtataaaaatcaagaaata 14616
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>gb|AC084797.5| Homo sapiens chromosome 16 clone RP11-62O3, complete sequence
          Length = 163855

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 108    atgtataaaaatcaagaaata 128
              |||||||||||||||||||||
Sbjct: 145343 atgtataaaaatcaagaaata 145363
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>emb|BX005342.14| Zebrafish DNA sequence from clone DKEY-81P7, complete sequence
          Length = 257502

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 57    ataaaaaaggcaaagctttgcccca 81
             |||||||||||||||||||| ||||
Sbjct: 23011 ataaaaaaggcaaagctttgtccca 23035
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>emb|CR352257.8| Zebrafish DNA sequence from clone CH211-261B21 in linkage group 7,
              complete sequence
          Length = 159979

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 179    actcaagcaatcattcaagca 199
              |||||||||||||||||||||
Sbjct: 121315 actcaagcaatcattcaagca 121335
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>gb|AY449459.1| Oikopleura dioica clone BACOIKO003 5xk14, complete sequence
          Length = 158922

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 200   atttagactttagaggcaaac 220
             |||||||||||||||||||||
Sbjct: 37866 atttagactttagaggcaaac 37846
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 346     gtggccggcggtggacggagc 366
               |||||||||||||||||||||
Sbjct: 9995332 gtggccggcggtggacggagc 9995352
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>dbj|AB039466.1| Pseudomonas corrugata gyrB gene for DNA gyrase subunit B, partial
           cds, strain:NCPPB 3316
          Length = 890

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 246 cgtcgtcgccggtggtggcaa 266
           |||||||||||||||||||||
Sbjct: 606 cgtcgtcgccggtggtggcaa 586
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>ref|XM_468111.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 633

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 241 gtcaccgtcgtcgccggtggtggc 264
           |||| |||||||||||||||||||
Sbjct: 3   gtcatcgtcgtcgccggtggtggc 26
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>gb|AC133861.5| Oryza sativa chromosome 3 BAC OSJNBb0031F05 genomic sequence, complete
             sequence
          Length = 131589

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 352   ggcggtggacggagcatggg 371
             ||||||||||||||||||||
Sbjct: 78688 ggcggtggacggagcatggg 78669
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>ref|XM_742381.1| Aspergillus fumigatus Af293 integral membrane protein (Afu8g06760)
           partial mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 261 tggcaaaggagccgacgagt 280
           ||||||||||||||||||||
Sbjct: 346 tggcaaaggagccgacgagt 327
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 366    catgggcatgagcatcctcgccgc 389
              |||||||||| |||||||||||||
Sbjct: 242094 catgggcatgggcatcctcgccgc 242071
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>ref|XM_808343.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053503999.30) partial mRNA
          Length = 4143

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 243 caccgtcgtcgccggtggtggcaa 266
           |||||||||||| |||||||||||
Sbjct: 102 caccgtcgtcgctggtggtggcaa 79
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>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0090F16, complete sequence
          Length = 147341

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 418   cgactccggcagccggctct 437
             ||||||||||||||||||||
Sbjct: 63282 cgactccggcagccggctct 63301
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>gb|BC039504.2| Homo sapiens cDNA clone IMAGE:5561426, partial cds
          Length = 1125

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 35  gtacaaagtgtcatcatcat 54
           ||||||||||||||||||||
Sbjct: 807 gtacaaagtgtcatcatcat 826
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>emb|AL160152.20| Human DNA sequence from clone RP11-360H15 on chromosome 13, complete
              sequence
          Length = 175151

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     cataaaaaaggcaaagcttt 75
              ||||||||||||||||||||
Sbjct: 119286 cataaaaaaggcaaagcttt 119267
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>gb|AY245373.1| Iris fulva clone FR3-6 IRRE retrotransposon, partial sequence
          Length = 5132

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 186  caatcattcaagcaatttag 205
            ||||||||||||||||||||
Sbjct: 3847 caatcattcaagcaatttag 3828
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>emb|AJ580915.1|SPA580915 Streptomyces parvulus Tu4055 cluster for borrelidin biosynthesis
          Length = 74787

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 334   ctgatcgccgtcgtggccgg 353
             ||||||||||||||||||||
Sbjct: 15158 ctgatcgccgtcgtggccgg 15139
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>gb|AC027118.9| Homo sapiens chromosome 10 clone RP11-573I11, complete sequence
          Length = 170255

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 35     gtacaaagtgtcatcatcat 54
              ||||||||||||||||||||
Sbjct: 149740 gtacaaagtgtcatcatcat 149721
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 418      cgactccggcagccggctct 437
                ||||||||||||||||||||
Sbjct: 24759206 cgactccggcagccggctct 24759187
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 246     cgtcgtcgccggtggtggca 265
               ||||||||||||||||||||
Sbjct: 6323613 cgtcgtcgccggtggtggca 6323594
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 241      gtcaccgtcgtcgccggtggtggc 264
                |||| |||||||||||||||||||
Sbjct: 33126868 gtcatcgtcgtcgccggtggtggc 33126845



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 348      ggccggcggtggacggagca 367
                ||||||||||||||||||||
Sbjct: 29739016 ggccggcggtggacggagca 29738997
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>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1191_G08
          Length = 172832

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 348    ggccggcggtggacggagca 367
              ||||||||||||||||||||
Sbjct: 107995 ggccggcggtggacggagca 107976
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>dbj|AP004002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1116_C08
          Length = 102317

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   cgtcgtcgccggtggtggca 265
             ||||||||||||||||||||
Sbjct: 74173 cgtcgtcgccggtggtggca 74154
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>dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1369_G08
          Length = 104190

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 241   gtcaccgtcgtcgccggtggtggc 264
             |||| |||||||||||||||||||
Sbjct: 42528 gtcatcgtcgtcgccggtggtggc 42505
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 418      cgactccggcagccggctct 437
                ||||||||||||||||||||
Sbjct: 25070876 cgactccggcagccggctct 25070857


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,037,726
Number of Sequences: 3902068
Number of extensions: 4037726
Number of successful extensions: 75511
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74876
Number of HSP's gapped (non-prelim): 635
length of query: 462
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 440
effective length of database: 17,147,199,772
effective search space: 7544767899680
effective search space used: 7544767899680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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