>UBPY_CAEEL (Q09931) Probable ubiquitin carboxyl-terminal hydrolase K02C4.3 (EC|
           3.1.2.15) (Ubiquitin thioesterase) (Ubiquitin-specific
           processing protease) (Deubiquitinating enzyme)
          Length = 1302

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 303 FIEVNSIVGLLDKLPARSRIASFTVFTSEATEDLQLILAW 422
           +IEV  ++ ++DKL   S+  S      +ATE L LI  W
Sbjct: 271 YIEVGPLINMVDKLSKSSKGPSTIGTQQDATEMLTLIFDW 310

>BARD1_MOUSE (O70445) BRCA1-associated RING domain protein 1 (BARD-1)|
          Length = 765

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 340 LSSKPTIEFTSINEHMIIPDHKAQTPATSPKIWLNGC 230
           L +K  +EF S   H+I+PD +AQ+        L+GC
Sbjct: 580 LKAKKCMEFDSTVTHVIVPDEEAQSTLKCMLGILSGC 616

>YR598_MIMIV (Q5UP65) Putative ankyrin repeat protein R598|
          Length = 304

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 23/76 (30%), Positives = 36/76 (47%)
 Frame = +2

Query: 200 DLLRCSSEVDTPV*PNFRGSCWRLCFVIRNYHVFIY*SEFDCGFAGQVTCSFSYRILHSI 379
           DL++  +EVD  +  ++  +  R   VI+N  V I    FD G       +FS R+  + 
Sbjct: 61  DLIKMVNEVDDQLIDHYISTVLRE-EVIKNCSVKILKYLFDMGLPVDFGRNFSIRLCSTK 119

Query: 380 HLRSYRRFAANPGMDS 427
           +L S      NPG D+
Sbjct: 120 YLGSNHYIKENPGQDT 135

>BARD1_RAT (Q9QZH2) BRCA1-associated RING domain protein 1 (BARD-1)|
          Length = 768

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -2

Query: 340 LSSKPTIEFTSINEHMIIPDHKAQTPATSPKIWLNGC 230
           L +K   EF +   H+I+PD +AQ+        LNGC
Sbjct: 583 LKAKKCAEFDNTVTHVIVPDEEAQSTLKCMLGILNGC 619

>RADC_PHOLL (Q7MY28) DNA repair protein radC homolog|
          Length = 230

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -1

Query: 242 VKRVYQLQRSIVRGLDGVNLNHMRLKNSCKTGHATLSFA-SVAQNKIFTCCNL 87
           + +V    R IVR    VN + + L ++  +GHA  S A  +  +K+   CNL
Sbjct: 153 INKVEVHPREIVRSAIKVNASSVILAHNHPSGHAEPSLADKIVTDKVIDACNL 205

>FIMW_SALTY (P37928) Fimbriae W protein|
          Length = 198

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 16/70 (22%), Positives = 31/70 (44%)
 Frame = +3

Query: 63  CRYIPLHLQVTTRKDFILCYTCKRQCRVSRFA*VLQPHVIKIDSIQTSYDAPLKLIHPFN 242
           C  IP+H Q   R   I+C  C ++  + R    + PH+ + D ++      + ++H   
Sbjct: 59  CYQIPMHTQHQLRA--IICNKCDKEKLMFRPCLYMLPHIYREDDVEEITRKMILILHKRA 116

Query: 243 QILGEVAGVC 272
                 +G+C
Sbjct: 117 LRHSVPSGIC 126


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,553,316
Number of Sequences: 219361
Number of extensions: 1255205
Number of successful extensions: 2494
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2494
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)