ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
2dbj|AP003615.3| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
3dbj|AK063544.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 3e-20
4dbj|AK072067.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
5gb|AC127546.4| Mus musculus BAC clone RP24-485N8 from chromosome... 44 0.36
6gb|AC133502.4| Mus musculus chromosome 7 clone RP24-290G20, comp... 44 0.36
7gb|AC132353.3| Mus musculus BAC clone RP24-100I23 from 17, compl... 42 1.4
8gb|AC165360.3| Mus musculus BAC clone RP23-110L20 from chromosom... 42 1.4
9ref|XM_638653.1| Dictyostelium discoideum hypothetical protein (... 40 5.7
10gb|AC148004.3| Mus musculus BAC clone RP23-352J18 from chromosom... 40 5.7
11gb|BC058415.1| Mus musculus RIKEN cDNA 4931406I20 gene, mRNA (cD... 40 5.7
12gb|BC056359.1| Mus musculus RIKEN cDNA 4931406I20 gene, mRNA (cD... 40 5.7
13gb|AC124084.8| Mus musculus chromosome 15, clone RP24-410P21, co... 40 5.7
14ref|NM_025739.2| Mus musculus RIKEN cDNA 4931406I20 gene (493140... 40 5.7
15gb|AC117191.4| Mus musculus BAC clone RP23-58O15 from 18, comple... 40 5.7
16gb|BC034875.1| Mus musculus RIKEN cDNA 4931406I20 gene, mRNA (cD... 40 5.7
17emb|AL645748.9| Mouse DNA sequence from clone RP23-241E24 on chr... 40 5.7
18gb|AC074045.23| Homo sapiens Xp BAC RP11-60N3 (Roswell Park Canc... 40 5.7
19gb|AC009166.4| Homo sapiens chromosome 16 clone RP11-80B1, compl... 40 5.7
20dbj|AK172415.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 5.7
21dbj|AK016436.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 5.7
22dbj|AK005165.1| Mus musculus adult male cerebellum cDNA, RIKEN f... 40 5.7
23gb|AC157580.5| Mus musculus chromosome 15, clone RP24-82M3, comp... 40 5.7
24gb|AC007498.7| Homo sapiens chromosome 16 clone RP11-424K7, comp... 40 5.7
25gb|AC116305.2| Dictyostelium discoideum chromosome 2 map 1005175... 40 5.7
26dbj|AK213214.1| Mus musculus cDNA, clone:Y2G0127J12, strand:minu... 40 5.7
27dbj|AK205769.1| Mus musculus cDNA, clone:Y2G0102L10, strand:plus... 40 5.7
28emb|CR382282.9| Zebrafish DNA sequence from clone CH211-208L4 in... 40 5.7
29emb|CT030638.12| Mouse DNA sequence from clone RP23-340M21 on ch... 40 5.7
30gb|AF021236.1|AF021236 African horse sickness virus capsid VP3 (... 40 5.7
31emb|AL844169.6| Mouse DNA sequence from clone RP23-322K15 on chr... 40 5.7
32gb|M94312.1|AHVVP3A African horsesickness virus inner shell prot... 40 5.7
33dbj|AP004720.2| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 5.7
34dbj|AP004722.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 5.7 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  107 bits (54), Expect = 3e-20
 Identities = 126/150 (84%)
 Strand = Plus / Plus

                                                                            
Query: 76       aaaagtacacgatttaattcacagtagtgaattaaaccttataggttcactctgatggtt 135
                ||||||||| ||||||| ||||| |||||||| ||| | | |  ||||  ||||||||||
Sbjct: 23491862 aaaagtacaggatttaactcacaatagtgaatcaaaacatctcagttctgtctgatggtt 23491921

                                                                            
Query: 136      tcgatggcattatatgatttaacaatgtacactgaacatttccaccgttttacagctgtt 195
                  |||||  || |||||||| |||||||| ||||||||| |||||| ||||||| |||||
Sbjct: 23491922 atgatgggtttctatgattttacaatgtatactgaacatgtccaccattttacaactgtt 23491981

                                              
Query: 196      aggaatcgtcgaattatacaaattactgaa 225
                ||||||| | |||| |||||||||||||||
Sbjct: 23491982 aggaatcctggaatcatacaaattactgaa 23492011
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>dbj|AP003615.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0486H12
          Length = 179085

 Score =  107 bits (54), Expect = 3e-20
 Identities = 126/150 (84%)
 Strand = Plus / Plus

                                                                          
Query: 76     aaaagtacacgatttaattcacagtagtgaattaaaccttataggttcactctgatggtt 135
              ||||||||| ||||||| ||||| |||||||| ||| | | |  ||||  ||||||||||
Sbjct: 151417 aaaagtacaggatttaactcacaatagtgaatcaaaacatctcagttctgtctgatggtt 151476

                                                                          
Query: 136    tcgatggcattatatgatttaacaatgtacactgaacatttccaccgttttacagctgtt 195
                |||||  || |||||||| |||||||| ||||||||| |||||| ||||||| |||||
Sbjct: 151477 atgatgggtttctatgattttacaatgtatactgaacatgtccaccattttacaactgtt 151536

                                            
Query: 196    aggaatcgtcgaattatacaaattactgaa 225
              ||||||| | |||| |||||||||||||||
Sbjct: 151537 aggaatcctggaatcatacaaattactgaa 151566
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>dbj|AK063544.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-D01, full
            insert sequence
          Length = 1274

 Score =  107 bits (54), Expect = 3e-20
 Identities = 126/150 (84%)
 Strand = Plus / Minus

                                                                        
Query: 76   aaaagtacacgatttaattcacagtagtgaattaaaccttataggttcactctgatggtt 135
            ||||||||| ||||||| ||||| |||||||| ||| | | |  ||||  ||||||||||
Sbjct: 1197 aaaagtacaggatttaactcacaatagtgaatcaaaacatctcagttctgtctgatggtt 1138

                                                                        
Query: 136  tcgatggcattatatgatttaacaatgtacactgaacatttccaccgttttacagctgtt 195
              |||||  || |||||||| |||||||| ||||||||| |||||| ||||||| |||||
Sbjct: 1137 atgatgggtttctatgattttacaatgtatactgaacatgtccaccattttacaactgtt 1078

                                          
Query: 196  aggaatcgtcgaattatacaaattactgaa 225
            ||||||| | |||| |||||||||||||||
Sbjct: 1077 aggaatcctggaatcatacaaattactgaa 1048
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>dbj|AK072067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114F06, full
            insert sequence
          Length = 1282

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 87/100 (87%)
 Strand = Plus / Minus

                                                                        
Query: 126  tctgatggtttcgatggcattatatgatttaacaatgtacactgaacatttccaccgttt 185
            ||||||||||  |||||  || |||||||| |||||||| ||||||||| |||||| |||
Sbjct: 1260 tctgatggttatgatgggtttctatgattttacaatgtatactgaacatgtccaccattt 1201

                                                    
Query: 186  tacagctgttaggaatcgtcgaattatacaaattactgaa 225
            |||| |||||||||||| | |||| |||||||||||||||
Sbjct: 1200 tacaactgttaggaatcctggaatcatacaaattactgaa 1161
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>gb|AC127546.4| Mus musculus BAC clone RP24-485N8 from chromosome 7, complete
            sequence
          Length = 151861

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 333  atcttggtccacctttcctgct 354
            ||||||||||||||||||||||
Sbjct: 1016 atcttggtccacctttcctgct 1037
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>gb|AC133502.4| Mus musculus chromosome 7 clone RP24-290G20, complete sequence
          Length = 160238

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 333   atcttggtccacctttcctgct 354
             ||||||||||||||||||||||
Sbjct: 45778 atcttggtccacctttcctgct 45757
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>gb|AC132353.3| Mus musculus BAC clone RP24-100I23 from 17, complete sequence
          Length = 202603

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 88    tttaattcacagtagtgaattaaac 112
             ||||||||||| |||||||||||||
Sbjct: 31635 tttaattcacattagtgaattaaac 31659
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>gb|AC165360.3| Mus musculus BAC clone RP23-110L20 from chromosome 17, complete
             sequence
          Length = 217732

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 88    tttaattcacagtagtgaattaaac 112
             ||||||||||| |||||||||||||
Sbjct: 51123 tttaattcacattagtgaattaaac 51099
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>ref|XM_638653.1| Dictyostelium discoideum hypothetical protein (DDB0167485), partial
            mRNA
          Length = 3981

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 56   caaacagaccaaagaacaagaaaa 79
            |||||||||||||||| |||||||
Sbjct: 3494 caaacagaccaaagaaaaagaaaa 3517
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>gb|AC148004.3| Mus musculus BAC clone RP23-352J18 from chromosome 18, complete
             sequence
          Length = 206275

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 56    caaacagaccaaagaacaagaaaa 79
             |||||| |||||||||||||||||
Sbjct: 75636 caaacaaaccaaagaacaagaaaa 75659
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>gb|BC058415.1| Mus musculus RIKEN cDNA 4931406I20 gene, mRNA (cDNA clone MGC:67356
            IMAGE:6813564), complete cds
          Length = 2910

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 283  gtgtgtctgtcggtcagtca 302
            ||||||||||||||||||||
Sbjct: 2350 gtgtgtctgtcggtcagtca 2331
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>gb|BC056359.1| Mus musculus RIKEN cDNA 4931406I20 gene, mRNA (cDNA clone MGC:73462
            IMAGE:6813564), complete cds
          Length = 2910

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 283  gtgtgtctgtcggtcagtca 302
            ||||||||||||||||||||
Sbjct: 2350 gtgtgtctgtcggtcagtca 2331
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>gb|AC124084.8| Mus musculus chromosome 15, clone RP24-410P21, complete sequence
          Length = 183447

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    atatgatttaacaatgtaca 166
              ||||||||||||||||||||
Sbjct: 115086 atatgatttaacaatgtaca 115067
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>ref|NM_025739.2| Mus musculus RIKEN cDNA 4931406I20 gene (4931406I20Rik), mRNA
          Length = 2910

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 283  gtgtgtctgtcggtcagtca 302
            ||||||||||||||||||||
Sbjct: 2350 gtgtgtctgtcggtcagtca 2331
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>gb|AC117191.4| Mus musculus BAC clone RP23-58O15 from 18, complete sequence
          Length = 149461

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 56  caaacagaccaaagaacaagaaaa 79
           |||||| |||||||||||||||||
Sbjct: 790 caaacaaaccaaagaacaagaaaa 813
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>gb|BC034875.1| Mus musculus RIKEN cDNA 4931406I20 gene, mRNA (cDNA clone
            IMAGE:1511472), complete cds
          Length = 1877

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 283  gtgtgtctgtcggtcagtca 302
            ||||||||||||||||||||
Sbjct: 1301 gtgtgtctgtcggtcagtca 1282
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>emb|AL645748.9| Mouse DNA sequence from clone RP23-241E24 on chromosome 13 Contains a
             CpG island, complete sequence
          Length = 58318

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   gaattatacaaattactgaa 225
             ||||||||||||||||||||
Sbjct: 26497 gaattatacaaattactgaa 26478
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>gb|AC074045.23| Homo sapiens Xp BAC RP11-60N3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 162381

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 56    caaacagaccaaagaacaagaaaa 79
             ||||||||||||||||||| ||||
Sbjct: 41900 caaacagaccaaagaacaataaaa 41877
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>gb|AC009166.4| Homo sapiens chromosome 16 clone RP11-80B1, complete sequence
          Length = 174550

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   aggtcctggttgcatctcca 257
             ||||||||||||||||||||
Sbjct: 59610 aggtcctggttgcatctcca 59629
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>dbj|AK172415.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830206L07 product:Adult male testis cDNA,
            RIKEN full-length enriched library, clone:4931406I20
            product:hypothetical RING finger containing protein, full
            insert sequence homolog [Mus musculus], full insert
            sequence
          Length = 1950

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 283  gtgtgtctgtcggtcagtca 302
            ||||||||||||||||||||
Sbjct: 1417 gtgtgtctgtcggtcagtca 1398
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>dbj|AK016436.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4931406I20 product:hypothetical RING
            finger containing protein, full insert sequence
          Length = 1676

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 283  gtgtgtctgtcggtcagtca 302
            ||||||||||||||||||||
Sbjct: 1598 gtgtgtctgtcggtcagtca 1579
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>dbj|AK005165.1| Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched
           library, clone:1500005M21 product:similar to HSPC246
           [Homo sapiens], full insert sequence
          Length = 804

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 283 gtgtgtctgtcggtcagtca 302
           ||||||||||||||||||||
Sbjct: 269 gtgtgtctgtcggtcagtca 250
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>gb|AC157580.5| Mus musculus chromosome 15, clone RP24-82M3, complete sequence
          Length = 207974

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   atatgatttaacaatgtaca 166
             ||||||||||||||||||||
Sbjct: 32576 atatgatttaacaatgtaca 32595
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>gb|AC007498.7| Homo sapiens chromosome 16 clone RP11-424K7, complete sequence
          Length = 176248

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   aggtcctggttgcatctcca 257
             ||||||||||||||||||||
Sbjct: 30257 aggtcctggttgcatctcca 30276
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>gb|AC116305.2| Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4,
              complete sequence
          Length = 413138

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 56     caaacagaccaaagaacaagaaaa 79
              |||||||||||||||| |||||||
Sbjct: 332851 caaacagaccaaagaaaaagaaaa 332828
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>dbj|AK213214.1| Mus musculus cDNA, clone:Y2G0127J12, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000030439, based on BLAT search
          Length = 403

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 283 gtgtgtctgtcggtcagtca 302
           ||||||||||||||||||||
Sbjct: 90  gtgtgtctgtcggtcagtca 71
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>dbj|AK205769.1| Mus musculus cDNA, clone:Y2G0102L10, strand:plus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000030439, based on BLAT search
          Length = 406

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 283 gtgtgtctgtcggtcagtca 302
           ||||||||||||||||||||
Sbjct: 148 gtgtgtctgtcggtcagtca 129
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>emb|CR382282.9| Zebrafish DNA sequence from clone CH211-208L4 in linkage group 24,
             complete sequence
          Length = 80334

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    cagaccaaagaacaagaaaa 79
             ||||||||||||||||||||
Sbjct: 57181 cagaccaaagaacaagaaaa 57162
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>emb|CT030638.12| Mouse DNA sequence from clone RP23-340M21 on chromosome 14, complete
              sequence
          Length = 223278

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 387    aaagagaaagcactgactgt 406
              ||||||||||||||||||||
Sbjct: 141493 aaagagaaagcactgactgt 141474
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>gb|AF021236.1|AF021236 African horse sickness virus capsid VP3 (L3) mRNA, complete cds
          Length = 2792

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 383  tggcaaagagaaagcactga 402
            ||||||||||||||||||||
Sbjct: 1673 tggcaaagagaaagcactga 1654
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>emb|AL844169.6| Mouse DNA sequence from clone RP23-322K15 on chromosome 4, complete
             sequence
          Length = 123433

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 283   gtgtgtctgtcggtcagtca 302
             ||||||||||||||||||||
Sbjct: 14238 gtgtgtctgtcggtcagtca 14257
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>gb|M94312.1|AHVVP3A African horsesickness virus inner shell protein (VP3) mRNA, complete
            cds
          Length = 2786

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 383  tggcaaagagaaagcactga 402
            ||||||||||||||||||||
Sbjct: 1667 tggcaaagagaaagcactga 1648
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>dbj|AP004720.2| Homo sapiens genomic DNA, chromosome 11q clone:CMF9-100O3, complete
             sequences
          Length = 43911

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    gaatgtgccatccataaacc 29
             ||||||||||||||||||||
Sbjct: 41312 gaatgtgccatccataaacc 41331
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>dbj|AP004722.2| Homo sapiens genomic DNA, chromosome 11q, clone:CMF9-89D24, complete
             sequence
          Length = 37649

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    gaatgtgccatccataaacc 29
             ||||||||||||||||||||
Sbjct: 25180 gaatgtgccatccataaacc 25199


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,844,657
Number of Sequences: 3902068
Number of extensions: 3844657
Number of successful extensions: 94664
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94595
Number of HSP's gapped (non-prelim): 69
length of query: 422
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 400
effective length of database: 17,147,199,772
effective search space: 6858879908800
effective search space used: 6858879908800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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