ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl01c03 |
|---|---|
| Clone Library Name | barley_pub |
>SUVH1_ARATH (Q9FF80) Histone-lysine N-methyltransferase, H3 lysine-9 specific| SUVH1 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 1) (H3-K9-HMTase 1) (Suppressor of variegation 3-9 homolog protein 1) (Su(var)3-9 homolog protein 1) (Protein SET DOMAIN GR Length = 670 Score = 51.6 bits (122), Expect = 1e-06 Identities = 25/44 (56%), Positives = 27/44 (61%), Gaps = 6/44 (13%) Frame = -2 Query: 491 HIPPMTELTYDYGQSGNSGCRR------SKSCLCWSRKCRGSFG 378 HIPPMTELTYDYG S SG + + C C S CRGSFG Sbjct: 627 HIPPMTELTYDYGVSRPSGTQNGNPLYGKRKCFCGSAYCRGSFG 670
>SUVH3_ARATH (Q9C5P4) Histone-lysine N-methyltransferase, H3 lysine-9 specific| SUVH3 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 3) (H3-K9-HMTase 3) (Suppressor of variegation 3-9 homolog protein 3) (Su(var)3-9 homolog protein 3) (Protein SET DOMAIN GR Length = 669 Score = 51.6 bits (122), Expect = 1e-06 Identities = 25/44 (56%), Positives = 28/44 (63%), Gaps = 6/44 (13%) Frame = -2 Query: 491 HIPPMTELTYDYGQSGNSGCR------RSKSCLCWSRKCRGSFG 378 HIPPM ELTYDYG S S R ++CLC S +CRGSFG Sbjct: 626 HIPPMAELTYDYGISPTSEARDESLLHGQRTCLCGSEQCRGSFG 669
>SUVHA_ARATH (Q3EC60) Putative histone-lysine N-methyltransferase, H3 lysine-9| specific SUVH10 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 10) (H3-K9-HMTase 10) (Suppressor of variegation 3-9 homolog protein 10) (Su(var)3-9 homolog protein 10) (Protein Length = 312 Score = 51.2 bits (121), Expect = 1e-06 Identities = 23/38 (60%), Positives = 27/38 (71%) Frame = -2 Query: 491 HIPPMTELTYDYGQSGNSGCRRSKSCLCWSRKCRGSFG 378 HIPP+TEL YDYG+S G K CLC ++KC GSFG Sbjct: 278 HIPPLTELRYDYGKSRGGG---KKMCLCRTKKCCGSFG 312
>SUVH8_ARATH (Q9C5P0) Histone-lysine N-methyltransferase, H3 lysine-9 specific| SUVH8 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 8) (H3-K9-HMTase 8) (Suppressor of variegation 3-9 homolog protein 8) (Su(var)3-9 homolog protein 8) (Protein SET DOMAIN GR Length = 755 Score = 49.7 bits (117), Expect = 4e-06 Identities = 26/45 (57%), Positives = 29/45 (64%), Gaps = 7/45 (15%) Frame = -2 Query: 491 HIPPMTELTYDYG-----QSGNSGC--RRSKSCLCWSRKCRGSFG 378 HIPPMTELTYDYG ++G + K CLC S KCRGSFG Sbjct: 711 HIPPMTELTYDYGISCVEKTGEDEVIYKGKKICLCGSVKCRGSFG 755
>SUVH7_ARATH (Q9C5P1) Histone-lysine N-methyltransferase, H3 lysine-9 specific| SUVH7 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 7) (H3-K9-HMTase 7) (Suppressor of variegation 3-9 homolog protein 7) (Su(var)3-9 homolog protein 7) (Protein SET DOMAIN GR Length = 693 Score = 47.8 bits (112), Expect = 2e-05 Identities = 25/45 (55%), Positives = 27/45 (60%), Gaps = 8/45 (17%) Frame = -2 Query: 491 HIPPMTELTYDYGQSGNSGC--------RRSKSCLCWSRKCRGSF 381 HIPPMTELTYDYG S + K+CLC S KCRGSF Sbjct: 648 HIPPMTELTYDYGVSCVERSEEDEVLLYKGKKTCLCGSVKCRGSF 692
>SUVH5_ARATH (O82175) Histone-lysine N-methyltransferase, H3 lysine-9 specific| SUVH5 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 5) (H3-K9-HMTase 5) (Suppressor of variegation 3-9 homolog protein 5) (Su(var)3-9 homolog protein 5) (Protein SET DOMAIN GR Length = 794 Score = 32.3 bits (72), Expect = 0.71 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%) Frame = -2 Query: 491 HIPPMTELTYDYGQS-----GNSGCRRSKSCLCWSRKCRG 387 +IPP+ EL+YDY ++G + K C C S +C G Sbjct: 752 NIPPLQELSYDYNYKIDQVYDSNGNIKKKFCYCGSAECSG 791
>SUVH4_ARATH (Q8GZB6) Histone-lysine N-methyltransferase, H3 lysine-9 specific| SUVH4 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 4) (H3-K9-HMTase 4) (Suppressor of variegation 3-9 homolog protein 4) (Su(var)3-9 homolog protein 4) (Protein KRYPTONITE) ( Length = 624 Score = 32.3 bits (72), Expect = 0.71 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 5/39 (12%) Frame = -2 Query: 491 HIPPMTELTYDYGQS-----GNSGCRRSKSCLCWSRKCR 390 +I PM ELTYDYG + G G + +C C + CR Sbjct: 582 NISPMQELTYDYGYALDSVHGPDGKVKQLACYCGALNCR 620
>MRAY_RICRI (Q9AKI9) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 361 Score = 30.8 bits (68), Expect = 2.1 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -1 Query: 408 LVSQVQGFLWLNNQPLRDTFLVEEAAYGGGGIMGVV 301 LV GFLW N QP + F+ + + GG++G++ Sbjct: 246 LVGSCLGFLWFNAQP-AEVFMGDTGSLSLGGVLGII 280
>MRAY_RICPR (Q9ZCW0) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 361 Score = 30.8 bits (68), Expect = 2.1 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -1 Query: 408 LVSQVQGFLWLNNQPLRDTFLVEEAAYGGGGIMGVV 301 LV GFLW N QP + F+ + + GG++G++ Sbjct: 246 LVGSCLGFLWFNAQP-AEVFMGDTGSLSLGGVLGII 280
>MRAY_RICMO (Q9AKP2) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 361 Score = 30.8 bits (68), Expect = 2.1 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -1 Query: 408 LVSQVQGFLWLNNQPLRDTFLVEEAAYGGGGIMGVV 301 LV GFLW N QP + F+ + + GG++G++ Sbjct: 246 LVGSCLGFLWFNAQP-AEVFMGDTGSLSLGGVLGII 280
>MRAY_RICFE (Q4UMI7) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 361 Score = 30.8 bits (68), Expect = 2.1 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -1 Query: 408 LVSQVQGFLWLNNQPLRDTFLVEEAAYGGGGIMGVV 301 LV GFLW N QP + F+ + + GG++G++ Sbjct: 246 LVGSCLGFLWFNAQP-AEVFMGDTGSLSLGGVLGII 280
>MRAY_RICCN (Q92H61) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 361 Score = 30.8 bits (68), Expect = 2.1 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -1 Query: 408 LVSQVQGFLWLNNQPLRDTFLVEEAAYGGGGIMGVV 301 LV GFLW N QP + F+ + + GG++G++ Sbjct: 246 LVGSCLGFLWFNAQP-AEVFMGDTGSLSLGGVLGII 280
>MRAY_RICTY (Q9AKD8) Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC| 2.7.8.13) (UDP-MurNAc-pentapeptide phosphotransferase) Length = 361 Score = 30.4 bits (67), Expect = 2.7 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -1 Query: 408 LVSQVQGFLWLNNQPLRDTFLVEEAAYGGGGIMGVV 301 LV GFLW N QP + F+ + + GG++G++ Sbjct: 246 LVGSCIGFLWFNAQP-AEVFMGDTGSLSLGGVLGII 280
>SUVH6_ARATH (Q8VZ17) Histone-lysine N-methyltransferase, H3 lysine-9 specific| SUVH6 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 6) (H3-K9-HMTase 6) (Suppressor of variegation 3-9 homolog protein 6) (Su(var)3-9 homolog protein 6) (Protein SET DOMAIN GR Length = 790 Score = 30.0 bits (66), Expect = 3.5 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Frame = -2 Query: 491 HIPPMTELTYDYGQS-----GNSGCRRSKSCLCWSRKCR 390 +IPP+ EL YDY + + G + K C C + CR Sbjct: 748 NIPPLQELCYDYNYALDQVRDSKGNIKQKPCFCGAAVCR 786
>PYRB_LEIXX (Q6AF88) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate| transcarbamylase) (ATCase) Length = 315 Score = 30.0 bits (66), Expect = 3.5 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -3 Query: 340 RSSLWWRRHYGCGVPATVEITLLPLSIRGWNA 245 RS++W R G V TLLP+ + GW A Sbjct: 177 RSNVWLLRTLGAAVTLVAPPTLLPVEVSGWPA 208
>SETB2_HUMAN (Q96T68) Probable histone-lysine N-methyltransferase, H3 lysine-9| specific (EC 2.1.1.43) (Histone H3-K9 methyltransferase) (H3-K9-HMTase) (SET domain bifurcated 2) (Chronic lymphocytic leukemia deletion region gene 8 protein) Length = 719 Score = 29.3 bits (64), Expect = 6.0 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = -2 Query: 491 HIPPMTELTYDYGQSGNSGCRRSKSCLCWSRKCR 390 ++ TELT+DYG + + C C KCR Sbjct: 682 YVKARTELTWDYGYEAGTVPEKEIFCQCGVNKCR 715
>DIM5_NEUCR (Q8X225) Histone-lysine N-methyltransferase, H3 lysine-9 specific| dim-5 (EC 2.1.1.43) (Histone H3-K9 methyltransferase dim-5) (H3-K9-HMTase dim-5) (HKMT) Length = 318 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 9/43 (20%) Frame = -2 Query: 488 IPPMTELTYDY--GQSGNSGCRRSKS-------CLCWSRKCRG 387 IP TELT+DY G +G S CLC + KCRG Sbjct: 273 IPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLCGTAKCRG 315
>ASHH1_ARATH (Q84WW6) Histone-lysine N-methyltransferase ASHH1 (EC 2.1.1.43)| (ASH1-homolog protein 1) (Protein SET DOMAIN GROUP 26) Length = 492 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/37 (40%), Positives = 17/37 (45%) Frame = -2 Query: 488 IPPMTELTYDYGQSGNSGCRRSKSCLCWSRKCRGSFG 378 I P TEL YDY G + CLC + C G G Sbjct: 195 ISPRTELAYDYNFEWYGGAK--VRCLCGAVACSGFLG 229
>GLB1_PHESE (P11740) Extracellular globin 1 (Globin I) (Erythrocruorin)| Length = 141 Score = 28.9 bits (63), Expect = 7.8 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +1 Query: 16 PSFALHGNHRFTGHINPLGLQIENDRFTAGLKHLRNDNT 132 P F HG G + +G+ E+D FT L HL+ +T Sbjct: 57 PEFQAHGIRVLAGLDSVIGVLDEDDTFTVQLAHLKAQHT 95 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,549,009 Number of Sequences: 219361 Number of extensions: 1387890 Number of successful extensions: 3097 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3047 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3091 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
