ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome... 84 5e-13
2gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome... 84 5e-13
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 84 5e-13
4gb|AF344453.1|AF344453 Oryza sativa SET1 (SET1) mRNA, complete cds 84 5e-13
5dbj|AK102379.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 5e-13
6dbj|AK059336.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 5e-13
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 84 5e-13
8gb|AY104411.1| Zea mays PCO124128 mRNA sequence 80 8e-12
9gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 60 7e-06
10gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbare str... 60 7e-06
11dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
12ref|NM_101640.1| Arabidopsis thaliana SUVH7 (SU(VAR)3-9 HOMOLOG ... 46 0.11
13ref|NM_128034.2| Arabidopsis thaliana SDG21 (SET DOMAIN GROUP 21... 46 0.11
14gb|AC007266.5| Arabidopsis thaliana chromosome 2 clone F27A10 ma... 46 0.11
15gb|AF344451.1|AF344451 Arabidopsis thaliana SUVH8 (SUVH8) gene, ... 46 0.11
16gb|AF344450.1|AF344450 Arabidopsis thaliana SUVH7 (SUVH7) mRNA, ... 46 0.11
17gb|AC034106.4|F2H15 Sequence of BAC F2H15 from Arabidopsis thali... 46 0.11
18gb|AC073618.48| Homo sapiens 12 BAC RP11-313E9 (Roswell Park Can... 42 1.7
19gb|AF545813.1| Zea mays SET domain protein 113 (sdg113) mRNA, co... 40 6.7
20gb|AC170189.2| Mus musculus BAC clone RP23-103L12 from chromosom... 40 6.7
21gb|BT012756.1| Lycopersicon esculentum clone 113700R, mRNA sequence 40 6.7
22gb|AC122934.2| Mus musculus BAC clone RP23-19A13 from 3, complet... 40 6.7
23gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 6.7
24emb|BX932790.1| Gallus gallus finished cDNA, clone ChEST276e2 40 6.7
25gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 6.7
26gb|AC004812.1|AC004812 Homo sapiens PAC clone 267D11 from 12, co... 40 6.7 
>gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0034P08, complete sequence
          Length = 173088

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                           
Query: 447   gctctgaccataatcatatgtaagctctgtcattggaggaatatgc 492
             ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 32453 gctctgaccataatcatatgtaagctctgtcatcggaggaatatgc 32498



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                         
Query: 374   tttagccaaaggaacccctgcacttgcgagaccaacataagcaacttttagacctccgac 433
             |||||||||||||||| ||||||||||||||||||||||||||  |||| ||| ||||||
Sbjct: 32359 tttagccaaaggaacctctgcacttgcgagaccaacataagcagtttttggacttccgac 32418

                       
Query: 434   accctgaatt 443
             | || |||||
Sbjct: 32419 atccagaatt 32428
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>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0007P22, complete sequence
          Length = 148068

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                            
Query: 447    gctctgaccataatcatatgtaagctctgtcattggaggaatatgc 492
              ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 143971 gctctgaccataatcatatgtaagctctgtcatcggaggaatatgc 144016



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Plus

                                                                          
Query: 374    tttagccaaaggaacccctgcacttgcgagaccaacataagcaacttttagacctccgac 433
              |||||||||||||||| ||||||||||||||||||||||||||  |||| ||| ||||||
Sbjct: 143877 tttagccaaaggaacctctgcacttgcgagaccaacataagcagtttttggacttccgac 143936

                        
Query: 434    accctgaatt 443
              | || |||||
Sbjct: 143937 atccagaatt 143946
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                            
Query: 374      tttagccaaaggaacccctgcacttgcgagaccaacataagcaacttttagacctccgac 433
                |||||||||||||||| ||||||||||||||||||||||||||  |||| ||| ||||||
Sbjct: 22308939 tttagccaaaggaacctctgcacttgcgagaccaacataagcagtttttggacttccgac 22308880

                          
Query: 434      accctgaatt 443
                | || |||||
Sbjct: 22308879 atccagaatt 22308870



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                              
Query: 447      gctctgaccataatcatatgtaagctctgtcattggaggaatatgc 492
                ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 22308845 gctctgaccataatcatatgtaagctctgtcatcggaggaatatgc 22308800
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>gb|AF344453.1|AF344453 Oryza sativa SET1 (SET1) mRNA, complete cds
          Length = 2982

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                        
Query: 374  tttagccaaaggaacccctgcacttgcgagaccaacataagcaacttttagacctccgac 433
            |||||||||||||||| ||||||||||||||||||||||||||  |||| ||| ||||||
Sbjct: 2515 tttagccaaaggaacctctgcacttgcgagaccaacataagcagtttttggacttccgac 2456

                      
Query: 434  accctgaatt 443
            | || |||||
Sbjct: 2455 atccagaatt 2446



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                          
Query: 447  gctctgaccataatcatatgtaagctctgtcattggaggaatatgc 492
            ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2421 gctctgaccataatcatatgtaagctctgtcatcggaggaatatgc 2376
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>dbj|AK102379.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092A08, full
            insert sequence
          Length = 3270

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                        
Query: 374  tttagccaaaggaacccctgcacttgcgagaccaacataagcaacttttagacctccgac 433
            |||||||||||||||| ||||||||||||||||||||||||||  |||| ||| ||||||
Sbjct: 2835 tttagccaaaggaacctctgcacttgcgagaccaacataagcagtttttggacttccgac 2776

                      
Query: 434  accctgaatt 443
            | || |||||
Sbjct: 2775 atccagaatt 2766



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                          
Query: 447  gctctgaccataatcatatgtaagctctgtcattggaggaatatgc 492
            ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2741 gctctgaccataatcatatgtaagctctgtcatcggaggaatatgc 2696
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>dbj|AK059336.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-A12, full
            insert sequence
          Length = 1858

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                          
Query: 447  gctctgaccataatcatatgtaagctctgtcattggaggaatatgc 492
            ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1449 gctctgaccataatcatatgtaagctctgtcatcggaggaatatgc 1404
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 63/70 (90%)
 Strand = Plus / Minus

                                                                            
Query: 374      tttagccaaaggaacccctgcacttgcgagaccaacataagcaacttttagacctccgac 433
                |||||||||||||||| ||||||||||||||||||||||||||  |||| ||| ||||||
Sbjct: 22618850 tttagccaaaggaacctctgcacttgcgagaccaacataagcagtttttggacttccgac 22618791

                          
Query: 434      accctgaatt 443
                | || |||||
Sbjct: 22618790 atccagaatt 22618781



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 45/46 (97%)
 Strand = Plus / Minus

                                                              
Query: 447      gctctgaccataatcatatgtaagctctgtcattggaggaatatgc 492
                ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 22618756 gctctgaccataatcatatgtaagctctgtcatcggaggaatatgc 22618711
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>gb|AY104411.1| Zea mays PCO124128 mRNA sequence
          Length = 1300

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                       
Query: 449 tctgaccataatcatatgtaagctctgtcattggaggaatatgc 492
           |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 772 tctgaccataatcataggtaagctctgtcattggaggaatatgc 729



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                      
Query: 374 tttagccaaaggaacccctgcacttgcgagaccaacataagcaacttttagacctccga 432
           |||||||||||||||| || |||||  | |||||||||||||||||||||||| |||||
Sbjct: 871 tttagccaaaggaacctctacacttcggggaccaacataagcaacttttagacttccga 813
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                      
Query: 451      tgaccataatcatatgtaagctctgtcattggaggaat 488
                |||||||||||||| |||||||||||||| ||||||||
Sbjct: 11536905 tgaccataatcataagtaagctctgtcatgggaggaat 11536868
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>gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0042L15, from chromosome 3, complete sequence
          Length = 172475

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                   
Query: 451   tgaccataatcatatgtaagctctgtcattggaggaat 488
             |||||||||||||| |||||||||||||| ||||||||
Sbjct: 87477 tgaccataatcataagtaagctctgtcatgggaggaat 87440
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                      
Query: 451      tgaccataatcatatgtaagctctgtcattggaggaat 488
                |||||||||||||| |||||||||||||| ||||||||
Sbjct: 11533668 tgaccataatcataagtaagctctgtcatgggaggaat 11533631
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>ref|NM_101640.1| Arabidopsis thaliana SUVH7 (SU(VAR)3-9 HOMOLOG 7); histone-lysine
            N-methyltransferase/ zinc ion binding AT1G17770 (SUVH7)
            mRNA, complete cds
          Length = 2082

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 454  ccataatcatatgtaagctctgtcattggaggaatatgc 492
            ||||| |||||||| | ||||||||| ||||||||||||
Sbjct: 1979 ccatagtcatatgttaactctgtcatcggaggaatatgc 1941
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>ref|NM_128034.2| Arabidopsis thaliana SDG21 (SET DOMAIN GROUP 21) AT2G24740 (SDG21)
            mRNA, complete cds
          Length = 2268

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 454  ccataatcatatgtaagctctgtcattggaggaat 488
            ||||| |||||||| | ||||||||||||||||||
Sbjct: 2168 ccatagtcatatgttaactctgtcattggaggaat 2134
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>gb|AC007266.5| Arabidopsis thaliana chromosome 2 clone F27A10 map mi238, complete
             sequence
          Length = 66237

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 454   ccataatcatatgtaagctctgtcattggaggaat 488
             ||||| |||||||| | ||||||||||||||||||
Sbjct: 26691 ccatagtcatatgttaactctgtcattggaggaat 26725
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>gb|AF344451.1|AF344451 Arabidopsis thaliana SUVH8 (SUVH8) gene, complete cds
          Length = 2268

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 454  ccataatcatatgtaagctctgtcattggaggaat 488
            ||||| |||||||| | ||||||||||||||||||
Sbjct: 2168 ccatagtcatatgttaactctgtcattggaggaat 2134
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>gb|AF344450.1|AF344450 Arabidopsis thaliana SUVH7 (SUVH7) mRNA, complete cds
          Length = 2082

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 454  ccataatcatatgtaagctctgtcattggaggaatatgc 492
            ||||| |||||||| | ||||||||| ||||||||||||
Sbjct: 1979 ccatagtcatatgttaactctgtcatcggaggaatatgc 1941
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>gb|AC034106.4|F2H15 Sequence of BAC F2H15 from Arabidopsis thaliana chromosome 1,
            complete sequence
          Length = 75133

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 454  ccataatcatatgtaagctctgtcattggaggaatatgc 492
            ||||| |||||||| | ||||||||| ||||||||||||
Sbjct: 3730 ccatagtcatatgttaactctgtcatcggaggaatatgc 3692
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>gb|AC073618.48| Homo sapiens 12 BAC RP11-313E9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 92909

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 263   agaaagaggcagcaaagttat 283
             |||||||||||||||||||||
Sbjct: 59901 agaaagaggcagcaaagttat 59881
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>gb|AF545813.1| Zea mays SET domain protein 113 (sdg113) mRNA, complete cds
          Length = 2428

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 453  accataatcatatgtaagctctgtcattggaggaatatgc 492
            |||||| ||||| || | ||||||||| ||||||||||||
Sbjct: 2254 accatagtcataagtcaactctgtcatgggaggaatatgc 2215
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>gb|AC170189.2| Mus musculus BAC clone RP23-103L12 from chromosome 3, complete sequence
          Length = 204731

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   gattatttagccaaaggaac 388
             ||||||||||||||||||||
Sbjct: 46135 gattatttagccaaaggaac 46154
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>gb|BT012756.1| Lycopersicon esculentum clone 113700R, mRNA sequence
          Length = 1165

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Minus

                                           
Query: 301 caccacacccataat-gccgccgccaccataa 331
           ||||| ||||||||| ||||||||||||||||
Sbjct: 529 caccagacccataattgccgccgccaccataa 498
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>gb|AC122934.2| Mus musculus BAC clone RP23-19A13 from 3, complete sequence
          Length = 189627

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 369    gattatttagccaaaggaac 388
              ||||||||||||||||||||
Sbjct: 153607 gattatttagccaaaggaac 153626
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 365     ggttgattatttagccaaag 384
               ||||||||||||||||||||
Sbjct: 1242833 ggttgattatttagccaaag 1242852
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>emb|BX932790.1| Gallus gallus finished cDNA, clone ChEST276e2
          Length = 1125

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 174  actacaactaacaacaccacagaa 197
            |||||||||||||| |||||||||
Sbjct: 1041 actacaactaacaagaccacagaa 1018
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 353     gtatcccttaagggttgattattt 376
               |||||||||||||||||| |||||
Sbjct: 3583495 gtatcccttaagggttgagtattt 3583472
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>gb|AC004812.1|AC004812 Homo sapiens PAC clone 267D11 from 12, complete sequence
          Length = 138532

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    ctgcaggcttgaaacatctt 117
             ||||||||||||||||||||
Sbjct: 45496 ctgcaggcttgaaacatctt 45515


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,175,854
Number of Sequences: 3902068
Number of extensions: 4175854
Number of successful extensions: 68584
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 68380
Number of HSP's gapped (non-prelim): 205
length of query: 492
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 470
effective length of database: 17,147,199,772
effective search space: 8059183892840
effective search space used: 8059183892840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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