ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR925725.10| Zebrafish DNA sequence from clone DKEYP-1D6 in ... 44 0.35
2ref|XM_658417.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 1.4
3gb|AC124828.14| Mus musculus chromosome 5, clone RP24-126A19, co... 40 5.5
4gb|AC101784.7| Mus musculus chromosome 7, clone RP24-136D20, com... 40 5.5
5emb|AL929319.4| Zebrafish DNA sequence from clone CH211-59F17 in... 40 5.5
6emb|BX936334.12| Zebrafish DNA sequence from clone DKEY-117L19 i... 40 5.5
7gb|AC112262.3| Mus musculus BAC clone RP23-363E22 from 7, comple... 40 5.5
8emb|CR457452.12| Zebrafish DNA sequence from clone DKEY-52H10 in... 40 5.5
9emb|AL935184.16| Zebrafish DNA sequence from clone DKEY-30K22 in... 40 5.5
10emb|CR759968.6| Zebrafish DNA sequence from clone CH211-198N5 in... 40 5.5
11emb|AL732562.8| Zebrafish DNA sequence from clone CH211-103D22 i... 40 5.5
12emb|BX649372.5| Zebrafish DNA sequence from clone DKEY-52K20 in ... 40 5.5
13emb|BX649311.10| Zebrafish DNA sequence from clone DKEY-63I8 in ... 40 5.5
14emb|AL954819.21| Zebrafish DNA sequence from clone CH211-1F7 in ... 40 5.5
15emb|BX001025.23| Zebrafish DNA sequence from clone CH211-240D20,... 40 5.5
16emb|BX323042.7| Zebrafish DNA sequence from clone DKEYP-78G2 in ... 40 5.5
17dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
18gb|AC125492.1| Homo sapiens 12 BAC RP11-416G10 (Roswell Park Can... 40 5.5
19dbj|AP005653.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.5
20emb|BX649277.5| Zebrafish DNA sequence from clone DKEYP-67A10 in... 40 5.5
21emb|BX000534.11| Zebrafish DNA sequence from clone DKEY-26G8 in ... 40 5.5
22emb|BX072556.9| Zebrafish DNA sequence from clone DKEY-29F19 in ... 40 5.5
23emb|AL773558.14| Zebrafish DNA sequence from clone CH211-207M11 ... 40 5.5
24emb|BX897719.9| Zebrafish DNA sequence from clone CH211-199I23 i... 40 5.5
25emb|BX000353.8| Zebrafish DNA sequence from clone DKEY-147H15, c... 40 5.5
26emb|AL844559.14| Zebrafish DNA sequence from clone DKEY-14K1, co... 40 5.5

>emb|CR925725.10| Zebrafish DNA sequence from clone DKEYP-1D6 in linkage group 10, complete
              sequence
          Length = 171074

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 81     tgaagtaatcgtaaatgtaaca 102
              ||||||||||||||||||||||
Sbjct: 153542 tgaagtaatcgtaaatgtaaca 153563



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>ref|XM_658417.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5905.2), mRNA
          Length = 1404

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 40   gatacaacattgtttcccacc 60
            |||||||||||||||||||||
Sbjct: 1085 gatacaacattgtttcccacc 1065



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>gb|AC124828.14| Mus musculus chromosome 5, clone RP24-126A19, complete sequence
          Length = 188504

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 255    tcctgtaaaccatccagacc 274
              ||||||||||||||||||||
Sbjct: 130312 tcctgtaaaccatccagacc 130293



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>gb|AC101784.7| Mus musculus chromosome 7, clone RP24-136D20, complete sequence
          Length = 169423

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   atccagaccttaaatttcca 285
             ||||||||||||||||||||
Sbjct: 94172 atccagaccttaaatttcca 94153



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>emb|AL929319.4| Zebrafish DNA sequence from clone CH211-59F17 in linkage group 10,
             complete sequence
          Length = 194614

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   agctgcaatgcatctctggg 360
             ||||||||||||||||||||
Sbjct: 71951 agctgcaatgcatctctggg 71932



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>emb|BX936334.12| Zebrafish DNA sequence from clone DKEY-117L19 in linkage group 8,
             complete sequence
          Length = 107810

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   agctgcaatgcatctctggg 360
             ||||||||||||||||||||
Sbjct: 16088 agctgcaatgcatctctggg 16069



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>gb|AC112262.3| Mus musculus BAC clone RP23-363E22 from 7, complete sequence
          Length = 150399

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    atccagaccttaaatttcca 285
              ||||||||||||||||||||
Sbjct: 147166 atccagaccttaaatttcca 147185



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>emb|CR457452.12| Zebrafish DNA sequence from clone DKEY-52H10 in linkage group 8, complete
              sequence
          Length = 232104

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    agctgcaatgcatctctggg 360
              ||||||||||||||||||||
Sbjct: 152812 agctgcaatgcatctctggg 152793



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>emb|AL935184.16| Zebrafish DNA sequence from clone DKEY-30K22 in linkage group 1, complete
              sequence
          Length = 255909

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    agctgcaatgcatctctggg 360
              ||||||||||||||||||||
Sbjct: 180472 agctgcaatgcatctctggg 180453



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>emb|CR759968.6| Zebrafish DNA sequence from clone CH211-198N5 in linkage group 8,
             complete sequence
          Length = 182233

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   accttaaatttccatactct 291
             ||||||||||||||||||||
Sbjct: 42308 accttaaatttccatactct 42289



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>emb|AL732562.8| Zebrafish DNA sequence from clone CH211-103D22 in linkage group 10
              Contains the 3' part of the cxadr gene (coxsackie virus and
              adenovirus receptor), a novel gene similar to AUTS2
              (autism-related protein 1) and four CpG islands, complete
              sequence
          Length = 187365

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    agctgcaatgcatctctggg 360
              ||||||||||||||||||||
Sbjct: 111102 agctgcaatgcatctctggg 111083



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>emb|BX649372.5| Zebrafish DNA sequence from clone DKEY-52K20 in linkage group 2,
             complete sequence
          Length = 249584

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   tgaacaaataatgttgttct 176
             ||||||||||||||||||||
Sbjct: 83534 tgaacaaataatgttgttct 83553



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>emb|BX649311.10| Zebrafish DNA sequence from clone DKEY-63I8 in linkage group 2, complete
              sequence
          Length = 228024

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    tgaacaaataatgttgttct 176
              ||||||||||||||||||||
Sbjct: 149128 tgaacaaataatgttgttct 149147



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>emb|AL954819.21| Zebrafish DNA sequence from clone CH211-1F7 in linkage group 8, complete
              sequence
          Length = 177929

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 272    accttaaatttccatactct 291
              ||||||||||||||||||||
Sbjct: 112166 accttaaatttccatactct 112147



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>emb|BX001025.23| Zebrafish DNA sequence from clone CH211-240D20, complete sequence
          Length = 179475

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   agctgcaatgcatctctggg 360
             ||||||||||||||||||||
Sbjct: 53148 agctgcaatgcatctctggg 53167



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>emb|BX323042.7| Zebrafish DNA sequence from clone DKEYP-78G2 in linkage group 6,
             complete sequence
          Length = 206473

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   agctgcaatgcatctctggg 360
             ||||||||||||||||||||
Sbjct: 84833 agctgcaatgcatctctggg 84814



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 238      attcaaccaccaaacaatcc 257
                ||||||||||||||||||||
Sbjct: 14596455 attcaaccaccaaacaatcc 14596436



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>gb|AC125492.1| Homo sapiens 12 BAC RP11-416G10 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 105400

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   ccttaaatttccatactctt 292
             ||||||||||||||||||||
Sbjct: 92177 ccttaaatttccatactctt 92196



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>dbj|AP005653.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBb0075E08
          Length = 130947

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 238    attcaaccaccaaacaatcc 257
              ||||||||||||||||||||
Sbjct: 100471 attcaaccaccaaacaatcc 100452



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>emb|BX649277.5| Zebrafish DNA sequence from clone DKEYP-67A10 in linkage group 20,
             complete sequence
          Length = 125366

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   agctgcaatgcatctctggg 360
             ||||||||||||||||||||
Sbjct: 38152 agctgcaatgcatctctggg 38171



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>emb|BX000534.11| Zebrafish DNA sequence from clone DKEY-26G8 in linkage group 12,
             complete sequence
          Length = 199670

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   agctgcaatgcatctctggg 360
             ||||||||||||||||||||
Sbjct: 18442 agctgcaatgcatctctggg 18461



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>emb|BX072556.9| Zebrafish DNA sequence from clone DKEY-29F19 in linkage group 6,
            complete sequence
          Length = 163223

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 341  agctgcaatgcatctctggg 360
            ||||||||||||||||||||
Sbjct: 3185 agctgcaatgcatctctggg 3204



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>emb|AL773558.14| Zebrafish DNA sequence from clone CH211-207M11 in linkage group 16,
              complete sequence
          Length = 196875

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    agctgcaatgcatctctggg 360
              ||||||||||||||||||||
Sbjct: 189311 agctgcaatgcatctctggg 189292



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>emb|BX897719.9| Zebrafish DNA sequence from clone CH211-199I23 in linkage group 13,
              complete sequence
          Length = 216407

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 341    agctgcaatgcatctctggg 360
              ||||||||||||||||||||
Sbjct: 161337 agctgcaatgcatctctggg 161356



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>emb|BX000353.8| Zebrafish DNA sequence from clone DKEY-147H15, complete sequence
          Length = 189040

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    agctgcaatgcatctctggg 360
              ||||||||||||||||||||
Sbjct: 142655 agctgcaatgcatctctggg 142636



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>emb|AL844559.14| Zebrafish DNA sequence from clone DKEY-14K1, complete sequence
          Length = 216608

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 341    agctgcaatgcatctctggg 360
              ||||||||||||||||||||
Sbjct: 154190 agctgcaatgcatctctggg 154209


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,405,158
Number of Sequences: 3902068
Number of extensions: 4405158
Number of successful extensions: 77779
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77715
Number of HSP's gapped (non-prelim): 64
length of query: 413
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 391
effective length of database: 17,147,199,772
effective search space: 6704555110852
effective search space used: 6704555110852
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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