Clone Name | rbastl01b12 |
---|---|
Clone Library Name | barley_pub |
>emb|CR925725.10| Zebrafish DNA sequence from clone DKEYP-1D6 in linkage group 10, complete sequence Length = 171074 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 81 tgaagtaatcgtaaatgtaaca 102 |||||||||||||||||||||| Sbjct: 153542 tgaagtaatcgtaaatgtaaca 153563
>ref|XM_658417.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5905.2), mRNA Length = 1404 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 gatacaacattgtttcccacc 60 ||||||||||||||||||||| Sbjct: 1085 gatacaacattgtttcccacc 1065
>gb|AC124828.14| Mus musculus chromosome 5, clone RP24-126A19, complete sequence Length = 188504 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 tcctgtaaaccatccagacc 274 |||||||||||||||||||| Sbjct: 130312 tcctgtaaaccatccagacc 130293
>gb|AC101784.7| Mus musculus chromosome 7, clone RP24-136D20, complete sequence Length = 169423 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 atccagaccttaaatttcca 285 |||||||||||||||||||| Sbjct: 94172 atccagaccttaaatttcca 94153
>emb|AL929319.4| Zebrafish DNA sequence from clone CH211-59F17 in linkage group 10, complete sequence Length = 194614 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 agctgcaatgcatctctggg 360 |||||||||||||||||||| Sbjct: 71951 agctgcaatgcatctctggg 71932
>emb|BX936334.12| Zebrafish DNA sequence from clone DKEY-117L19 in linkage group 8, complete sequence Length = 107810 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 agctgcaatgcatctctggg 360 |||||||||||||||||||| Sbjct: 16088 agctgcaatgcatctctggg 16069
>gb|AC112262.3| Mus musculus BAC clone RP23-363E22 from 7, complete sequence Length = 150399 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 atccagaccttaaatttcca 285 |||||||||||||||||||| Sbjct: 147166 atccagaccttaaatttcca 147185
>emb|CR457452.12| Zebrafish DNA sequence from clone DKEY-52H10 in linkage group 8, complete sequence Length = 232104 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 agctgcaatgcatctctggg 360 |||||||||||||||||||| Sbjct: 152812 agctgcaatgcatctctggg 152793
>emb|AL935184.16| Zebrafish DNA sequence from clone DKEY-30K22 in linkage group 1, complete sequence Length = 255909 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 agctgcaatgcatctctggg 360 |||||||||||||||||||| Sbjct: 180472 agctgcaatgcatctctggg 180453
>emb|CR759968.6| Zebrafish DNA sequence from clone CH211-198N5 in linkage group 8, complete sequence Length = 182233 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 accttaaatttccatactct 291 |||||||||||||||||||| Sbjct: 42308 accttaaatttccatactct 42289
>emb|AL732562.8| Zebrafish DNA sequence from clone CH211-103D22 in linkage group 10 Contains the 3' part of the cxadr gene (coxsackie virus and adenovirus receptor), a novel gene similar to AUTS2 (autism-related protein 1) and four CpG islands, complete sequence Length = 187365 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 agctgcaatgcatctctggg 360 |||||||||||||||||||| Sbjct: 111102 agctgcaatgcatctctggg 111083
>emb|BX649372.5| Zebrafish DNA sequence from clone DKEY-52K20 in linkage group 2, complete sequence Length = 249584 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 tgaacaaataatgttgttct 176 |||||||||||||||||||| Sbjct: 83534 tgaacaaataatgttgttct 83553
>emb|BX649311.10| Zebrafish DNA sequence from clone DKEY-63I8 in linkage group 2, complete sequence Length = 228024 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 tgaacaaataatgttgttct 176 |||||||||||||||||||| Sbjct: 149128 tgaacaaataatgttgttct 149147
>emb|AL954819.21| Zebrafish DNA sequence from clone CH211-1F7 in linkage group 8, complete sequence Length = 177929 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 accttaaatttccatactct 291 |||||||||||||||||||| Sbjct: 112166 accttaaatttccatactct 112147
>emb|BX001025.23| Zebrafish DNA sequence from clone CH211-240D20, complete sequence Length = 179475 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 agctgcaatgcatctctggg 360 |||||||||||||||||||| Sbjct: 53148 agctgcaatgcatctctggg 53167
>emb|BX323042.7| Zebrafish DNA sequence from clone DKEYP-78G2 in linkage group 6, complete sequence Length = 206473 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 agctgcaatgcatctctggg 360 |||||||||||||||||||| Sbjct: 84833 agctgcaatgcatctctggg 84814
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 attcaaccaccaaacaatcc 257 |||||||||||||||||||| Sbjct: 14596455 attcaaccaccaaacaatcc 14596436
>gb|AC125492.1| Homo sapiens 12 BAC RP11-416G10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 105400 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 ccttaaatttccatactctt 292 |||||||||||||||||||| Sbjct: 92177 ccttaaatttccatactctt 92196
>dbj|AP005653.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0075E08 Length = 130947 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 attcaaccaccaaacaatcc 257 |||||||||||||||||||| Sbjct: 100471 attcaaccaccaaacaatcc 100452
>emb|BX649277.5| Zebrafish DNA sequence from clone DKEYP-67A10 in linkage group 20, complete sequence Length = 125366 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 agctgcaatgcatctctggg 360 |||||||||||||||||||| Sbjct: 38152 agctgcaatgcatctctggg 38171
>emb|BX000534.11| Zebrafish DNA sequence from clone DKEY-26G8 in linkage group 12, complete sequence Length = 199670 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 agctgcaatgcatctctggg 360 |||||||||||||||||||| Sbjct: 18442 agctgcaatgcatctctggg 18461
>emb|BX072556.9| Zebrafish DNA sequence from clone DKEY-29F19 in linkage group 6, complete sequence Length = 163223 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 agctgcaatgcatctctggg 360 |||||||||||||||||||| Sbjct: 3185 agctgcaatgcatctctggg 3204
>emb|AL773558.14| Zebrafish DNA sequence from clone CH211-207M11 in linkage group 16, complete sequence Length = 196875 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 agctgcaatgcatctctggg 360 |||||||||||||||||||| Sbjct: 189311 agctgcaatgcatctctggg 189292
>emb|BX897719.9| Zebrafish DNA sequence from clone CH211-199I23 in linkage group 13, complete sequence Length = 216407 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 agctgcaatgcatctctggg 360 |||||||||||||||||||| Sbjct: 161337 agctgcaatgcatctctggg 161356
>emb|BX000353.8| Zebrafish DNA sequence from clone DKEY-147H15, complete sequence Length = 189040 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 agctgcaatgcatctctggg 360 |||||||||||||||||||| Sbjct: 142655 agctgcaatgcatctctggg 142636
>emb|AL844559.14| Zebrafish DNA sequence from clone DKEY-14K1, complete sequence Length = 216608 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 agctgcaatgcatctctggg 360 |||||||||||||||||||| Sbjct: 154190 agctgcaatgcatctctggg 154209 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,405,158 Number of Sequences: 3902068 Number of extensions: 4405158 Number of successful extensions: 77779 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77715 Number of HSP's gapped (non-prelim): 64 length of query: 413 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 391 effective length of database: 17,147,199,772 effective search space: 6704555110852 effective search space used: 6704555110852 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)