ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl01b11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK071334.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090L01, full insert sequence Length = 3709 Score = 202 bits (102), Expect = 8e-49 Identities = 186/214 (86%) Strand = Plus / Minus Query: 262 ggcgagcgagggatgagcgacggcttgggttccttgctcgattcatagggatggttctca 321 |||||||||||||||||||| ||| || | |||||||||| || ||||| |||||||| Sbjct: 3398 ggcgagcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcg 3339 Query: 322 cggaactcatccatcagggactctattggcatcgctcgcaacgactcgatcgtgcctttg 381 |||||||| |||||||||||||| || ||||||||||||| ||||||||||| | ||||| Sbjct: 3338 cggaactcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttg 3279 Query: 382 ctcgggacttccggctcacacctcaccggagtttcaccagtcggctcatagtccctgtag 441 ||||| || |||||||| |||||||||||||||| || |||||||| |||||| ||||| Sbjct: 3278 ctcggcacctccggctccgacctcaccggagtttcgccggtcggctcgtagtccttgtag 3219 Query: 442 ctgctttggaaagccttctcggcatgtgtgttga 475 ||||| |||||||| || ||||| || ||||||| Sbjct: 3218 ctgctctggaaagcgttgtcggcgtgggtgttga 3185
>dbj|AK060581.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H01, full insert sequence Length = 1784 Score = 202 bits (102), Expect = 8e-49 Identities = 186/214 (86%) Strand = Plus / Minus Query: 262 ggcgagcgagggatgagcgacggcttgggttccttgctcgattcatagggatggttctca 321 |||||||||||||||||||| ||| || | |||||||||| || ||||| |||||||| Sbjct: 1478 ggcgagcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcg 1419 Query: 322 cggaactcatccatcagggactctattggcatcgctcgcaacgactcgatcgtgcctttg 381 |||||||| |||||||||||||| || ||||||||||||| ||||||||||| | ||||| Sbjct: 1418 cggaactcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttg 1359 Query: 382 ctcgggacttccggctcacacctcaccggagtttcaccagtcggctcatagtccctgtag 441 ||||| || |||||||| |||||||||||||||| || |||||||| |||||| ||||| Sbjct: 1358 ctcggcacctccggctccgacctcaccggagtttcgccggtcggctcgtagtccttgtag 1299 Query: 442 ctgctttggaaagccttctcggcatgtgtgttga 475 ||||| |||||||| || ||||| || ||||||| Sbjct: 1298 ctgctctggaaagcgttgtcggcgtgggtgttga 1265
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 170 bits (86), Expect = 3e-39 Identities = 152/174 (87%) Strand = Plus / Plus Query: 262 ggcgagcgagggatgagcgacggcttgggttccttgctcgattcatagggatggttctca 321 |||||||||||||||||||| ||| || | |||||||||| || ||||| |||||||| Sbjct: 27935778 ggcgagcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcg 27935837 Query: 322 cggaactcatccatcagggactctattggcatcgctcgcaacgactcgatcgtgcctttg 381 |||||||| |||||||||||||| || ||||||||||||| ||||||||||| | ||||| Sbjct: 27935838 cggaactcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttg 27935897 Query: 382 ctcgggacttccggctcacacctcaccggagtttcaccagtcggctcatagtcc 435 ||||| || |||||||| |||||||||||||||| || |||||||| |||||| Sbjct: 27935898 ctcggcacctccggctccgacctcaccggagtttcgccggtcggctcgtagtcc 27935951
>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0562A06 Length = 154198 Score = 170 bits (86), Expect = 3e-39 Identities = 152/174 (87%) Strand = Plus / Plus Query: 262 ggcgagcgagggatgagcgacggcttgggttccttgctcgattcatagggatggttctca 321 |||||||||||||||||||| ||| || | |||||||||| || ||||| |||||||| Sbjct: 13270 ggcgagcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcg 13329 Query: 322 cggaactcatccatcagggactctattggcatcgctcgcaacgactcgatcgtgcctttg 381 |||||||| |||||||||||||| || ||||||||||||| ||||||||||| | ||||| Sbjct: 13330 cggaactcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttg 13389 Query: 382 ctcgggacttccggctcacacctcaccggagtttcaccagtcggctcatagtcc 435 ||||| || |||||||| |||||||||||||||| || |||||||| |||||| Sbjct: 13390 ctcggcacctccggctccgacctcaccggagtttcgccggtcggctcgtagtcc 13443
>gb|AF272752.1|AF272752 Zea mays kinesin heavy chain (KIN4) mRNA, partial cds Length = 3385 Score = 121 bits (61), Expect = 2e-24 Identities = 130/153 (84%) Strand = Plus / Minus Query: 302 attcatagggatggttctcacggaactcatccatcagggactctattggcatcgctcgca 361 ||||||| |||||||||||||||||||| | ||||| || ||| || ||||| ||||| | Sbjct: 3092 attcatacggatggttctcacggaactcgttcatcaaggtctccatgggcatggctcgaa 3033 Query: 362 acgactcgatcgtgcctttgctcgggacttccggctcacacctcaccggagtttcaccag 421 ||||||||||| ||||||||| || || | ||||||| ||||||| ||||||||||| | Sbjct: 3032 gcgactcgatcgagcctttgcttggcacgttcggctcaaacctcactggagtttcacccg 2973 Query: 422 tcggctcatagtccctgtagctgctttggaaag 454 ||||||| || ||| |||| ||| ||||||||| Sbjct: 2972 tcggctcgtaatccttgtaactggtttggaaag 2940
>gb|BT018857.1| Zea mays clone EL01N0556F08.d mRNA sequence Length = 2117 Score = 107 bits (54), Expect = 3e-20 Identities = 135/162 (83%) Strand = Plus / Minus Query: 303 ttcatagggatggttctcacggaactcatccatcagggactctattggcatcgctcgcaa 362 |||||| |||||||||||||||||||||| ||||| || ||| | ||||| ||||||| Sbjct: 1902 ttcatacggatggttctcacggaactcattcatcatggtctccacgggcatggctcgcag 1843 Query: 363 cgactcgatcgtgcctttgctcgggacttccggctcacacctcaccggagtttcaccagt 422 ||| || |||| ||||||||| || || | ||||||| ||||||||||||||||||| | Sbjct: 1842 cgattcaatcgagcctttgcttggcacgttcggctcagacctcaccggagtttcacctga 1783 Query: 423 cggctcatagtccctgtagctgctttggaaagccttctcggc 464 || || |||||| |||| ||| |||||| |||||| ||||| Sbjct: 1782 gggttcgtagtccttgtaactggtttggagagccttatcggc 1741
>gb|AF272755.1|AF272755 Zea mays kinesin heavy chain (KIN8) mRNA, partial cds Length = 3514 Score = 107 bits (54), Expect = 3e-20 Identities = 135/162 (83%) Strand = Plus / Minus Query: 303 ttcatagggatggttctcacggaactcatccatcagggactctattggcatcgctcgcaa 362 |||||| |||||||||||||||||||||| ||||| || ||| | ||||| ||||||| Sbjct: 3176 ttcatacggatggttctcacggaactcattcatcatggtctccacgggcatggctcgcag 3117 Query: 363 cgactcgatcgtgcctttgctcgggacttccggctcacacctcaccggagtttcaccagt 422 ||| || |||| ||||||||| || || | ||||||| ||||||||||||||||||| | Sbjct: 3116 cgattcaatcgagcctttgcttggcacgttcggctcagacctcaccggagtttcacctga 3057 Query: 423 cggctcatagtccctgtagctgctttggaaagccttctcggc 464 || || |||||| |||| ||| |||||| |||||| ||||| Sbjct: 3056 gggttcgtagtccttgtaactggtttggagagccttgtcggc 3015
>gb|AC173289.2| Medicago truncatula chromosome 2 BAC clone mth2-33e9, complete sequence Length = 127190 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 220 aaaagaagtatcatcattgtttctc 244 ||||||||||| ||||||||||||| Sbjct: 116413 aaaagaagtattatcattgtttctc 116437
>ref|XM_383550.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03374.1) partial mRNA Length = 4185 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 tcgctcgcaacgactcgatc 372 |||||||||||||||||||| Sbjct: 3898 tcgctcgcaacgactcgatc 3879
>emb|AL356865.19| Human DNA sequence from clone RP11-36N22 on chromosome 10 Contains a pseudogene similar to part of solute carrier family 25, (mitochondrial carrier), member 18 (SLC25A18), the GPR10 gene for G protein-coupled receptor 10 (GR3, PrRPR), a translocase of outer mitochondrial membrane 22 homolog (yeast) (TOM22) (TOMM22) pseudogene and one CpG island, complete sequence Length = 156604 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 tccatcagggactctattgg 350 |||||||||||||||||||| Sbjct: 114185 tccatcagggactctattgg 114204
>emb|CR387936.8| Zebrafish DNA sequence from clone CH211-85P6 in linkage group 8, complete sequence Length = 170195 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 ttacactgcacacagaaaag 224 |||||||||||||||||||| Sbjct: 96460 ttacactgcacacagaaaag 96441
>emb|Z19150.1|RNABSRECB R.norvegicus androgen receptor DNA-binding domain DNA sequence Length = 1720 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 actgcacacagaaaagaagt 228 |||||||||||||||||||| Sbjct: 285 actgcacacagaaaagaagt 304
>emb|BX511153.9| Zebrafish DNA sequence from clone DKEYP-66D1 in linkage group 2, complete sequence Length = 146969 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 aattttttacaagaatattc 77 |||||||||||||||||||| Sbjct: 120050 aattttttacaagaatattc 120069
>gb|AC036214.9| Homo sapiens chromosome 8, clone RP11-26J3, complete sequence Length = 160545 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 98 atacattctagcaagaatgcaaaa 121 ||||||||||| |||||||||||| Sbjct: 102314 atacattctagtaagaatgcaaaa 102291
>gb|AC018952.9| Homo sapiens chromosome 8, clone RP11-498N9, complete sequence Length = 180535 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 atacattctagcaagaatgcaaaa 121 ||||||||||| |||||||||||| Sbjct: 30566 atacattctagtaagaatgcaaaa 30589
>emb|AL844556.4| Mouse DNA sequence from clone RP23-21N12 on chromosome 2, complete sequence Length = 178656 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 acagaaaagaagtatcatca 235 |||||||||||||||||||| Sbjct: 22549 acagaaaagaagtatcatca 22530 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,086,113 Number of Sequences: 3902068 Number of extensions: 4086113 Number of successful extensions: 68323 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68283 Number of HSP's gapped (non-prelim): 40 length of query: 485 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 463 effective length of database: 17,147,199,772 effective search space: 7939153494436 effective search space used: 7939153494436 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
