>XIST_MOUSE (P27571) X inactive-specific transcript protein (Fragment)|
          Length = 298

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -2

Query: 221 VCLDIANSIWSVLLCC-NKFIPQRLVGVHCLPEASVPSFFAGVCIFC*PCSVPFVLFMLH 45
           VCL +   ++ +L C  N  +   L    CL         + VC+FC  C +P  +F+LH
Sbjct: 59  VCLCLPCFVYLLLPCVSNSLLHLFLPSFACL-------LLSFVCLFCLQCVLPIPMFLLH 111

Query: 44  ALAVISCEGM 15
              V+SC  +
Sbjct: 112 ---VLSCRAL 118

>IRK1_CAEEL (P52192) Inward rectifier potassium channel irk-1|
          Length = 505

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -3

Query: 289 LSAVYSCMLLPVQLYHTFNHSNKFASTSPTAFGRY--FYAVTNLSLKDWLVSIAFQR 125
           L +VYS  L  V+ +HT  + +++ +T     G      A+  L L+ ++V I F +
Sbjct: 157 LDSVYSSFLFAVETHHTIGYGHRYITTECYLAGAIVCLQAICALLLQSFMVGIVFAK 213

>AKAP3_HUMAN (O75969) A-kinase anchor protein 3 (Protein kinase A-anchoring|
           protein 3) (PRKA3) (A-kinase anchor protein 110 kDa)
           (AKAP 110) (Sperm oocyte-binding protein)
           (Fibrousheathin I) (Fibrous sheath protein of 95 kDa)
           (FSP95)
          Length = 853

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = +3

Query: 75  ARSTKNTYPRKKRRYRGLWKAMDTNQSLRDKFVTA*KYRPNAVGDVEANLLEWLKV 242
           AR     +PR+++R+RG  +  D   S+ +  +T   Y  + V D+  ++++ LK+
Sbjct: 254 AREGGRFFPRERKRFRGQERPDDFTASVSEGIMT---YANSVVSDMMVSIMKTLKI 306

>ODPA_SCHPO (Q10489) Pyruvate dehydrogenase E1 component alpha subunit,|
           mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
          Length = 409

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +2

Query: 74  SKVNKKYIPPQKKTVQRPLEGNGHQPIFEG*ICYSIEVPTKCCWRCRGKLIGMVESMIQL 253
           S+ N  ++P +     +P        +FEG   Y I+VP+      +G+L+G+ E M+ +
Sbjct: 35  SRANPAHVPEEH---DKPFPVKLDDSVFEG---YKIDVPSTEIEVTKGELLGLYEKMVTI 88

>AXUD1_MOUSE (P59054) Axin-1 up-regulated gene 1 protein (TGF-beta-induced|
           apoptosis protein 3) (TAIP-3)
          Length = 583

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -1

Query: 258 QCNCIILSTIPISL----PRHRQQHLVGTSML*QIYPSKIGWCPLPSRGLCTV 112
           Q +C + S  P S+    PR R  H+    +    +P   G+  +PSRG CT+
Sbjct: 59  QDSCGLQSFTPPSILKRAPRERPGHVAFNGITVYYFPRCQGFTSVPSRGGCTL 111

>OCTB1_DROME (Q9VCZ3) Octopamine receptor beta-1 (DmOct-beta-1R) (DmOA2)|
          Length = 508

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = -1

Query: 342 SEDTTCSRGSCLDAASRFFLQCILVCCFQCNCIILSTI------PISLPRHRQQHLV 190
           ++D   S GS  DA     L  + V CF    IIL+ I       +S+ RHR+  ++
Sbjct: 85  AQDIQASEGSTDDADGSSHLALVFVKCFIIGFIILAAILGNMLVIVSVMRHRKLRII 141

>MBD5_HUMAN (Q9P267) Methyl-CpG-binding domain protein 5 (Methyl-CpG-binding|
            protein MBD5)
          Length = 1494

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = -1

Query: 252  NCIILSTIPISLPRHRQQHLVGTSML*QIYPS 157
            N  +LS++PISLP + QQHL+  ++L  + PS
Sbjct: 915  NPSLLSSLPISLPVN-QQHLLNQNLLNILQPS 945

>OR1A1_PANTR (Q9TUA7) Olfactory receptor 1A1|
          Length = 309

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -3

Query: 298 KSVLSAVYSC--MLLPVQLYHTFNHSNKFASTSPTAFGRYFYAVTNLSLKDWLVSIAF 131
           K VL A  +C   L  V LY+             T  G YF  +TN SLKD ++++ +
Sbjct: 231 KGVLKAFSTCGSHLTVVSLYYG------------TVMGMYFRPLTNYSLKDAVITVMY 276

>OR1A1_HUMAN (Q9P1Q5) Olfactory receptor 1A1 (Olfactory receptor 17-7) (OR17-7)|
           (Olfactory receptor OR17-11)
          Length = 309

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -3

Query: 298 KSVLSAVYSC--MLLPVQLYHTFNHSNKFASTSPTAFGRYFYAVTNLSLKDWLVSIAF 131
           K VL A  +C   L  V LY+             T  G YF  +TN SLKD ++++ +
Sbjct: 231 KGVLKAFSTCGSHLTVVSLYYG------------TVMGTYFRPLTNYSLKDAVITVMY 276

>TRA1_STRSL (P37245) Probable transposase for insertion-like sequence element|
           IS1161
          Length = 342

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = -3

Query: 358 TLKECIRRYYMFQRFVSRRGKSVLSAVYSCMLLPVQLYHTFNHSNKFASTS 206
           TL E   RY + ++ V ++ + V  AV  CM L      T ++ N+F+S S
Sbjct: 216 TLVERQTRYAVTKKLVEKKAEYVNQAVLECMKLYPIKSITADNGNEFSSLS 266


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,409,943
Number of Sequences: 219361
Number of extensions: 1211178
Number of successful extensions: 3288
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3287
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)