ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009451.1| Triticum aestivum clone wlmk8.pk0022.c11:fis, ful... 234 2e-58
2gb|AF456245.1| Oryza sativa (japonica cultivar-group) NBS-LRR-li... 62 1e-06
3gb|AC119073.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0... 62 1e-06
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 62 1e-06
6emb|AJ507098.1|HVU507098 Hordeum vulgare mRNA for NBS-LRR diseas... 46 0.086
7gb|AC110525.10| Mus musculus chromosome 8, clone RP23-82N11, com... 42 1.4
8gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
9gb|AC158350.7| Mus musculus chromosome 8, clone RP24-250A3, comp... 42 1.4
10gb|AC119071.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0... 42 1.4
11gb|AC106854.5| Homo sapiens chromosome 18, clone CTD-2302G2, com... 42 1.4
12gb|AC092186.1|AC092186 Drosophila melanogaster, chromosome 2L, r... 42 1.4
13gb|AC091043.12| Homo sapiens chromosome 18, clone RP11-595B24, c... 42 1.4
14gb|AE003583.3| Drosophila melanogaster chromosome 2L, section 8 ... 42 1.4
15gb|AC004276.1|AC004276 Drosophila melanogaster DNA sequence (P1 ... 42 1.4
16emb|AL023874.1|DMC100G10 Drosophila melanogaster cosmid clone 10... 40 5.3
17gb|AY118458.1| Drosophila melanogaster GH01006 full insert cDNA 40 5.3
18gb|AC104145.7| Drosophila melanogaster X BAC RP98-30B1 (Roswell ... 40 5.3
19ref|NM_206616.1| Drosophila melanogaster CG2658-RB, transcript v... 40 5.3
20ref|NM_130661.1| Drosophila melanogaster CG2658-RA, transcript v... 40 5.3
21gb|AE003425.3| Drosophila melanogaster chromosome X, section 9 o... 40 5.3 
>gb|BT009451.1| Triticum aestivum clone wlmk8.pk0022.c11:fis, full insert mRNA
            sequence
          Length = 1986

 Score =  234 bits (118), Expect = 2e-58
 Identities = 252/294 (85%), Gaps = 7/294 (2%)
 Strand = Plus / Minus

                                                                        
Query: 113  acggtacagaggcctctggaaggcaatggacaccaaccaatctttgagggata--aattt 170
            |||||||||||||||||||||||||||| |||| |||||||| |||||| |||  ||| |
Sbjct: 1846 acggtacagaggcctctggaaggcaatgcacacgaaccaatccttgaggaatataaatgt 1787

                                                                        
Query: 171  gttacagcatagaagtaccgaccaaatgctgttggcgatgtcgag----gcaaacttatt 226
            ||||||  ||||||||||||||||||||||| ||| ||||||||     ||||| |||||
Sbjct: 1786 gttacaatatagaagtaccgaccaaatgctgctggtgatgtcgataatcgcaaatttatt 1727

                                                                        
Query: 227  ggaatggttgaaagtatgatacagttgcactggaagcagcatacaagaata-cactgcag 285
            |||||| || |||| | ||| |||||| | |||| ||| ||| |||||||  ||||||||
Sbjct: 1726 ggaatgattaaaagcacgatgcagttggattggatgcaccatccaagaatggcactgcag 1667

                                                                        
Query: 286  aaagaaccgacttgccgcgtctagacacgaacctctggaacatgtagtatcttctgatgc 345
            |||||||||    ||||| |||| ||||||||||||||||||||||  |||||| |||||
Sbjct: 1666 aaagaaccggtgagccgcatctacacacgaacctctggaacatgtaccatcttcagatgc 1607

                                                                  
Query: 346  attcctttagtgtcccattgagttctgaaatccttgtgcaagttcagcagccag 399
            || |||| ||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 1606 atcccttcagtgtcccattgagttctgaagtccttgtgcaagctcagcagccag 1553



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 75/89 (84%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                        
Query: 4    tacaaacaatacataccttcacatgaaattactgctaa-agcatgtaacataaacaacac 62
            |||||| |||||||||||| ||| ||||||||| |||| ||  |||| | ||||||||| 
Sbjct: 1942 tacaaataatacatacctttacaggaaattactactaagagtgtgtagcttaaacaacag 1883

                                         
Query: 63   aaacggtacagagcaaggtcaacaaaaaa 91
            |||| ||||||  || |||||||||||||
Sbjct: 1882 aaacagtacagtccatggtcaacaaaaaa 1854
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>gb|AF456245.1| Oryza sativa (japonica cultivar-group) NBS-LRR-like protein (YR5)
            mRNA, complete cds
          Length = 3134

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                        
Query: 305  tctagacacgaacctctggaacatgtagtatcttctgatgcattcctttagtgtcccatt 364
            |||| ||||||| ||||||||||||  | ||||||||||||||||  ||  ||| |||||
Sbjct: 2866 tctaaacacgaatctctggaacatgctgcatcttctgatgcattctgtttttgtgccatt 2807

                                               
Query: 365  gagttctgaaatccttgtgcaagttcagcagccag 399
            ||||| |||| ||| |||||| || ||| ||||||
Sbjct: 2806 gagttttgaagtccctgtgcaggtacagaagccag 2772
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>gb|AC119073.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0082N20 BAC genomic
             sequence, complete sequence
          Length = 138826

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 79/95 (83%)
 Strand = Plus / Plus

                                                                         
Query: 305   tctagacacgaacctctggaacatgtagtatcttctgatgcattcctttagtgtcccatt 364
             |||| ||||||| ||||||||||||  | ||||||||||||||||  ||  ||| |||||
Sbjct: 13349 tctaaacacgaatctctggaacatgctgcatcttctgatgcattctgtttttgtgccatt 13408

                                                
Query: 365   gagttctgaaatccttgtgcaagttcagcagccag 399
             ||||| |||| ||| |||||| || ||| ||||||
Sbjct: 13409 gagttttgaagtccctgtgcaggtacagaagccag 13443
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 79/95 (83%)
 Strand = Plus / Plus

                                                                           
Query: 305     tctagacacgaacctctggaacatgtagtatcttctgatgcattcctttagtgtcccatt 364
               |||| ||||||| ||||||||||||  | ||||||||||||||||  ||  ||| |||||
Sbjct: 6554139 tctaaacacgaatctctggaacatgctgcatcttctgatgcattctgtttttgtgccatt 6554198

                                                  
Query: 365     gagttctgaaatccttgtgcaagttcagcagccag 399
               ||||| |||| ||| |||||| || ||| ||||||
Sbjct: 6554199 gagttttgaagtccctgtgcaggtacagaagccag 6554233



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                           
Query: 309     gacacgaacctctggaacatgtagtatcttctgatgcattcctttagtgtcccattgagt 368
               |||||| | ||||||||||||| | ||||| || |||||||| ||  | ||||| |||| 
Sbjct: 6806731 gacacgcaactctggaacatgttgcatcttttgttgcattccatttttttcccactgaga 6806672

                                
Query: 369     tctgaaatccttgtgca 385
               |||||||| ||| ||||
Sbjct: 6806671 tctgaaattcttatgca 6806655
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 79/95 (83%)
 Strand = Plus / Plus

                                                                           
Query: 305     tctagacacgaacctctggaacatgtagtatcttctgatgcattcctttagtgtcccatt 364
               |||| ||||||| ||||||||||||  | ||||||||||||||||  ||  ||| |||||
Sbjct: 6620606 tctaaacacgaatctctggaacatgctgcatcttctgatgcattctgtttttgtgccatt 6620665

                                                  
Query: 365     gagttctgaaatccttgtgcaagttcagcagccag 399
               ||||| |||| ||| |||||| || ||| ||||||
Sbjct: 6620666 gagttttgaagtccctgtgcaggtacagaagccag 6620700



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                           
Query: 309     gacacgaacctctggaacatgtagtatcttctgatgcattcctttagtgtcccattgagt 368
               |||||| | ||||||||||||| | ||||| || |||||||| ||  | ||||| |||| 
Sbjct: 6873198 gacacgcaactctggaacatgttgcatcttttgttgcattccatttttttcccactgaga 6873139

                                
Query: 369     tctgaaatccttgtgca 385
               |||||||| ||| ||||
Sbjct: 6873138 tctgaaattcttatgca 6873122
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>emb|AJ507098.1|HVU507098 Hordeum vulgare mRNA for NBS-LRR disease resistance protein homologue
            (rga S-L8 gene)
          Length = 3261

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                        
Query: 308  agacacgaacctctggaacatgtagtatcttctgatgcattcctttagtgtcccattgag 367
            |||||||||||||  ||||||| |  |||||||| |||||||| ||  ||||||| ||||
Sbjct: 2968 agacacgaacctcctgaacatgcaccatcttctgctgcattccgttcttgtcccactgag 2909

                   
Query: 368  ttctgaa 374
            || ||||
Sbjct: 2908 ttttgaa 2902
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>gb|AC110525.10| Mus musculus chromosome 8, clone RP23-82N11, complete sequence
          Length = 153281

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 152   atctttgagggataaatttgt 172
             |||||||||||||||||||||
Sbjct: 37479 atctttgagggataaatttgt 37499
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>gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0007H22, complete sequence
          Length = 160938

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                         
Query: 309   gacacgaacctctggaacatgtagtatcttctgatgcattcctttagtgtcccattgagt 368
             |||||| | ||||||||||||| | ||||| || |||||||| ||  | ||||| |||| 
Sbjct: 80120 gacacgcaactctggaacatgttgcatcttttgttgcattccatttttttcccactgaga 80179

                              
Query: 369   tctgaaatccttgtgca 385
             |||||||| ||| ||||
Sbjct: 80180 tctgaaattcttatgca 80196
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>gb|AC158350.7| Mus musculus chromosome 8, clone RP24-250A3, complete sequence
          Length = 174965

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 152    atctttgagggataaatttgt 172
              |||||||||||||||||||||
Sbjct: 133080 atctttgagggataaatttgt 133100
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>gb|AC119071.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0044D15 BAC genomic
              sequence, complete sequence
          Length = 144544

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 63/77 (81%)
 Strand = Plus / Minus

                                                                          
Query: 309    gacacgaacctctggaacatgtagtatcttctgatgcattcctttagtgtcccattgagt 368
              |||||| | ||||||||||||| | ||||| || |||||||| ||  | ||||| |||| 
Sbjct: 137579 gacacgcaactctggaacatgttgcatcttttgttgcattccatttttttcccactgaga 137520

                               
Query: 369    tctgaaatccttgtgca 385
              |||||||| ||| ||||
Sbjct: 137519 tctgaaattcttatgca 137503
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>gb|AC106854.5| Homo sapiens chromosome 18, clone CTD-2302G2, complete sequence
          Length = 116879

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 357   gtcccattgagttctgaaatccttg 381
             ||||| |||||||||||||||||||
Sbjct: 97607 gtccctttgagttctgaaatccttg 97583
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>gb|AC092186.1|AC092186 Drosophila melanogaster, chromosome 2L, region 22D-22E, BAC clone
             BACR22P10, complete sequence
          Length = 184650

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 45    atgtaacataaacaacacaaa 65
             |||||||||||||||||||||
Sbjct: 76579 atgtaacataaacaacacaaa 76559
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>gb|AC091043.12| Homo sapiens chromosome 18, clone RP11-595B24, complete sequence
          Length = 208310

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 357    gtcccattgagttctgaaatccttg 381
              ||||| |||||||||||||||||||
Sbjct: 166668 gtccctttgagttctgaaatccttg 166692
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>gb|AE003583.3| Drosophila melanogaster chromosome 2L, section 8 of 83 of the complete
             sequence
          Length = 303641

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 45    atgtaacataaacaacacaaa 65
             |||||||||||||||||||||
Sbjct: 86788 atgtaacataaacaacacaaa 86768
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>gb|AC004276.1|AC004276 Drosophila melanogaster DNA sequence (P1 DS01020 (D139)), complete
             sequence
          Length = 86567

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 45    atgtaacataaacaacacaaa 65
             |||||||||||||||||||||
Sbjct: 22485 atgtaacataaacaacacaaa 22505
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>emb|AL023874.1|DMC100G10 Drosophila melanogaster cosmid clone 100G10
          Length = 21489

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 78  aggtcaacaaaaaatacata 97
           ||||||||||||||||||||
Sbjct: 806 aggtcaacaaaaaatacata 825
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>gb|AY118458.1| Drosophila melanogaster GH01006 full insert cDNA
          Length = 3105

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 78   aggtcaacaaaaaatacata 97
            ||||||||||||||||||||
Sbjct: 3062 aggtcaacaaaaaatacata 3043
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>gb|AC104145.7| Drosophila melanogaster X BAC RP98-30B1 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 161569

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    aggtcaacaaaaaatacata 97
             ||||||||||||||||||||
Sbjct: 34295 aggtcaacaaaaaatacata 34314
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>ref|NM_206616.1| Drosophila melanogaster CG2658-RB, transcript variant B (CG2658),
            mRNA
          Length = 3088

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 78   aggtcaacaaaaaatacata 97
            ||||||||||||||||||||
Sbjct: 3062 aggtcaacaaaaaatacata 3043
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>ref|NM_130661.1| Drosophila melanogaster CG2658-RA, transcript variant A (CG2658),
            mRNA
          Length = 3033

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 78   aggtcaacaaaaaatacata 97
            ||||||||||||||||||||
Sbjct: 3008 aggtcaacaaaaaatacata 2989
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>gb|AE003425.3| Drosophila melanogaster chromosome X, section 9 of 74 of the complete
             sequence
          Length = 309053

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    aggtcaacaaaaaatacata 97
             ||||||||||||||||||||
Sbjct: 60899 aggtcaacaaaaaatacata 60918


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,652,795
Number of Sequences: 3902068
Number of extensions: 3652795
Number of successful extensions: 67906
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67802
Number of HSP's gapped (non-prelim): 100
length of query: 399
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 377
effective length of database: 17,147,199,772
effective search space: 6464494314044
effective search space used: 6464494314044
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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