ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YB35_SCHPO (O14340) Oxysterol-binding protein homolog C2F12.05c 31 1.0
2GCYA3_HUMAN (Q02108) Guanylate cyclase soluble subunit alpha-3 (... 28 8.6
3DEPP_PONPY (Q5RBE4) Protein DEPP 28 8.6
4DEPP_HUMAN (Q9NTK1) Protein DEPP (Decidual protein induced by pr... 28 8.6

>YB35_SCHPO (O14340) Oxysterol-binding protein homolog C2F12.05c|
          Length = 1310

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
 Frame = +3

Query: 18  FVIKNNISKEYNN------------NVSVSTIVHEPLQKSTHPYLQTVTRRTSPHTKENG 161
           F + N +   Y N            N+ ++ +VH+P Q +    +   + R S   K N 
Sbjct: 276 FTLNNGVLSYYKNQDDASSACRGSINLKLARLVHDPKQPTVFQVIGKGSVRYS--VKANS 333

Query: 162 -IEGKPCIQS*ATAVXXXXXXXXXNITGDHRREASQEMRSSSGKFTE-QAEGQS 317
            +E K  I + ++A+         N+T D+    + ++  ++ KFT+  A G S
Sbjct: 334 PVEAKKWIAAISSAIENDEEANKPNVTADNASFGTHDLAPAAHKFTQSNASGNS 387



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>GCYA3_HUMAN (Q02108) Guanylate cyclase soluble subunit alpha-3 (EC 4.6.1.2)|
           (GCS-alpha-3) (Soluble guanylate cyclase large subunit)
           (GCS-alpha-1)
          Length = 690

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 370 QEILSRKKSSR*LVIAH*LWPSACSVNLPELDRIS 266
           QE L ++K+SR  V  H L  S C +  PE +R++
Sbjct: 56  QESLPQRKTSRSRVYLHTLAESICKLIFPEFERLN 90



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>DEPP_PONPY (Q5RBE4) Protein DEPP|
          Length = 212

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 205 LLLAPCSVPTLQETTEEKHLKKCGQAP 285
           LLL+   +PT++ETTEE  L   GQ P
Sbjct: 5   LLLSVAHLPTIRETTEEMLLGGPGQEP 31



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>DEPP_HUMAN (Q9NTK1) Protein DEPP (Decidual protein induced by progesterone)|
           (Fasting-induced gene protein) (FIG)
          Length = 212

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 205 LLLAPCSVPTLQETTEEKHLKKCGQAP 285
           LLL+   +PT++ETTEE  L   GQ P
Sbjct: 5   LLLSVAHLPTIRETTEEMLLGGPGQEP 31


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,236,971
Number of Sequences: 219361
Number of extensions: 1104505
Number of successful extensions: 2912
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2912
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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