ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYL_ZYMMO (Q5NMK1) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 28 5.3
2STAT_DROME (Q24151) Signal transducer and transcription activato... 28 5.3
3CH60_CYAME (Q85G22) 60 kDa chaperonin (Protein Cpn60) (groEL pro... 28 5.3
4SBCD_BORBU (O51769) Exonuclease sbcD homolog 28 6.9
5SIGIR_HUMAN (Q6IA17) Single Ig IL-1-related receptor (Single Ig ... 28 6.9
6HEMH_HORVU (P42045) Ferrochelatase-2, chloroplast precursor (EC ... 28 6.9
7PRLHR_HUMAN (P49683) Prolactin-releasing peptide receptor (PrRP ... 27 9.0

>SYL_ZYMMO (Q5NMK1) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 846

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -2

Query: 375 RFCTRALQTVTRLNLKEKF 319
           RF TRALQ++ RL++KE F
Sbjct: 553 RFWTRALQSIGRLDIKEPF 571



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>STAT_DROME (Q24151) Signal transducer and transcription activator (Protein|
           marelle) (d-STAT)
          Length = 761

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 185 QPKVISGAFQRLRETIHTHHCRKGTNAAPSCASH 286
           +P V+      ++ T+H H CR G N + S   H
Sbjct: 701 EPLVLDPVTGYVKSTLHVHVCRNGENGSTSGTPH 734



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>CH60_CYAME (Q85G22) 60 kDa chaperonin (Protein Cpn60) (groEL protein)|
          Length = 526

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 223 GNDSHTSLSEGNKCSSQLCLTQGVRF 300
           G D   SL EG    +QL +TQG+RF
Sbjct: 169 GADGVISLEEGKSSQTQLQITQGMRF 194



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>SBCD_BORBU (O51769) Exonuclease sbcD homolog|
          Length = 413

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +3

Query: 198 FLVPFNVFGKRFTHITVG 251
           +++PFNVFG  F+++ +G
Sbjct: 211 YIIPFNVFGNGFSYVALG 228



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>SIGIR_HUMAN (Q6IA17) Single Ig IL-1-related receptor (Single Ig IL-1R-related|
           molecule) (Single immunoglobulin domain-containing
           IL1R-related protein) (Toll/interleukin-1 receptor 8)
           (TIR8)
          Length = 410

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 18  SSKSNLSNIGRRSYNCRTSTYCSI 89
           SS+ ++S++G R+Y+ RT  YC +
Sbjct: 382 SSEVDVSDLGSRNYSARTDFYCLV 405



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>HEMH_HORVU (P42045) Ferrochelatase-2, chloroplast precursor (EC 4.99.1.1)|
           (Ferrochelatase II) (Protoheme ferro-lyase 2) (Heme
           synthetase 2)
          Length = 484

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -3

Query: 383 KSVDSARGLCKP*QGSIXXXXXXXXXXXXRTPCVRHSWELHLFPSDSDVCESFPEDVE 210
           K   +  G  KP   S             R+P ++H   L +  + +DVC +F EDV+
Sbjct: 41  KCEQNLHGKAKPLLLSASGKARGTSGLVHRSPVLKHQHHLSVRSTSTDVCTTFDEDVK 98



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>PRLHR_HUMAN (P49683) Prolactin-releasing peptide receptor (PrRP receptor)|
           (PrRPR) (G-protein coupled receptor 10) (hGR3)
          Length = 370

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 290 PCVRHSWELHLFPSDSDVCESFPEDVERHQKLLWAELILLVISAP 156
           P   H++ + L P D  +CE F    ER ++L    L+L+    P
Sbjct: 193 PAAVHTYHVELKPHDVRLCEEFWGSQERQRQLYAWGLLLVTYLLP 237


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,322,033
Number of Sequences: 219361
Number of extensions: 783870
Number of successful extensions: 1997
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1997
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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