>COPB_DICDI (Q23924) Probable coatomer subunit beta (Beta-coat protein)|
           (Beta-COP) (Fragment)
          Length = 400

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 21/29 (72%), Positives = 26/29 (89%)
 Frame = -3

Query: 448 EKQVDGKLSGYIRIRSKTQGIALSLGDKI 362
           EKQ DGK+SGYIRIR+K Q IA++LG+KI
Sbjct: 365 EKQADGKISGYIRIRAKVQSIAVTLGEKI 393

>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 964

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 20/30 (66%), Positives = 27/30 (90%)
 Frame = -3

Query: 436  DGKLSGYIRIRSKTQGIALSLGDKITLKQK 347
            D K++G+IRIR+K+QG+ALSLGDKI+  QK
Sbjct: 929  DSKVTGHIRIRAKSQGMALSLGDKISSSQK 958

>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 20/30 (66%), Positives = 26/30 (86%)
 Frame = -3

Query: 436  DGKLSGYIRIRSKTQGIALSLGDKITLKQK 347
            D  ++G+IRIR+K+QG+ALSLGDKI L QK
Sbjct: 920  DAAVTGHIRIRAKSQGMALSLGDKINLSQK 949

>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 20/30 (66%), Positives = 26/30 (86%)
 Frame = -3

Query: 436  DGKLSGYIRIRSKTQGIALSLGDKITLKQK 347
            D  ++G+IRIR+K+QG+ALSLGDKI L QK
Sbjct: 920  DAAVTGHIRIRAKSQGMALSLGDKINLSQK 949

>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 940

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 20/26 (76%), Positives = 23/26 (88%)
 Frame = -3

Query: 448 EKQVDGKLSGYIRIRSKTQGIALSLG 371
           EK V G +SG++RIRSKTQGIALSLG
Sbjct: 912 EKSVSGPISGHVRIRSKTQGIALSLG 937

>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 19/30 (63%), Positives = 25/30 (83%)
 Frame = -3

Query: 436  DGKLSGYIRIRSKTQGIALSLGDKITLKQK 347
            D  ++ +IRIR+K+QG+ALSLGDKI L QK
Sbjct: 920  DAAVTVHIRIRAKSQGMALSLGDKINLSQK 949

>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 973

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = -3

Query: 421  GYIRIRSKTQGIALSLGDKITLKQK 347
            GY+RIRSK QG+ALSLGD++ L  K
Sbjct: 939  GYVRIRSKGQGLALSLGDRVALIAK 963

>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system|
           defective) (Homeobox protein NK-2)
          Length = 723

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +1

Query: 4   KSMRH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKGVGRDHCISRGH 156
           +  R+   PE ++L      TPTQ    F +HR+ +K+A + KG      +  GH
Sbjct: 565 RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEGHPGLLHGH 619

>HNK2_XENLA (P42587) Homeobox protein XENK-2|
          Length = 196

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +1

Query: 4   KSMRH*KGPEIQYLNP----TPTQTSHLFLHHRFLSKKASSWKGV 126
           +  R+   PE ++L      TPTQ    F +HR+  K+A S KG+
Sbjct: 89  RQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARSEKGM 133


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,643,017
Number of Sequences: 219361
Number of extensions: 1078478
Number of successful extensions: 2810
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2810
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)