ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl01b01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065546.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031G01, full insert sequence Length = 3036 Score = 149 bits (75), Expect = 1e-32 Identities = 222/271 (81%) Strand = Plus / Minus Query: 201 gaattccacatcacatctcgtctcgagcttctttagtggctgatgacggcgagcactcag 260 |||||||| |||||||||| | |||| ||||| |||| ||||| || || |||| | Sbjct: 2864 gaattccagatcacatctcaccgcgaggctctttggtggttgatggtggggaacacttgg 2805 Query: 261 cctcaactgctaaatcctcgacaactcgtgggcatggatcaccaaatatatcgttcgaaa 320 |||||||||||||||| | || |||| | |||||||||||||||| | |||||| |||| Sbjct: 2804 cctcaactgctaaatctttgaggactcctcggcatggatcaccaaagacatcgttggaaa 2745 Query: 321 cactgattgtgcattcgctgttgcccacgcacgcctctgataccaaggcaagagtacttg 380 ||||||| | |||| | ||||||| || || ||||||| ||||| | ||||| || | Sbjct: 2744 cactgatagcacatttggtgttgccaacacatgcctctgtcaccaaatccagagtgctcg 2685 Query: 381 aagcatggcactttcctatggagaagttctggcaaccacctgacggagttccatagctcg 440 | |||||||| || ||| ||||||||||| |||| |||||||| |||||||||||||| | Sbjct: 2684 atgcatggcaattccctttggagaagttcaggcagccacctgaaggagttccatagcttg 2625 Query: 441 caaatgtaatcttagtgatcaaatgcccatc 471 |||||||||||| || ||||| ||||||||| Sbjct: 2624 caaatgtaatctcagagatcacatgcccatc 2594
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 97.6 bits (49), Expect = 3e-17 Identities = 79/89 (88%) Strand = Plus / Plus Query: 383 gcatggcactttcctatggagaagttctggcaaccacctgacggagttccatagctcgca 442 |||||||| || ||| ||||||||||| |||| |||||||| |||||||||||||| ||| Sbjct: 13806661 gcatggcaattccctttggagaagttcaggcagccacctgaaggagttccatagcttgca 13806720 Query: 443 aatgtaatcttagtgatcaaatgcccatc 471 |||||||||| || ||||| ||||||||| Sbjct: 13806721 aatgtaatctcagagatcacatgcccatc 13806749 Score = 69.9 bits (35), Expect = 7e-09 Identities = 104/127 (81%) Strand = Plus / Plus Query: 201 gaattccacatcacatctcgtctcgagcttctttagtggctgatgacggcgagcactcag 260 |||||||| |||||||||| | |||| ||||| |||| ||||| || || |||| | Sbjct: 13806041 gaattccagatcacatctcaccgcgaggctctttggtggttgatggtggggaacacttgg 13806100 Query: 261 cctcaactgctaaatcctcgacaactcgtgggcatggatcaccaaatatatcgttcgaaa 320 |||||||||||||||| | || |||| | |||||||||||||||| | |||||| |||| Sbjct: 13806101 cctcaactgctaaatctttgaggactcctcggcatggatcaccaaagacatcgttggaaa 13806160 Query: 321 cactgat 327 ||||||| Sbjct: 13806161 cactgat 13806167
>emb|AL935071.4|CNS08CCN Oryza sativa chromosome 12, . BAC OSJNBb0016C24 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 87778 Score = 97.6 bits (49), Expect = 3e-17 Identities = 79/89 (88%) Strand = Plus / Plus Query: 383 gcatggcactttcctatggagaagttctggcaaccacctgacggagttccatagctcgca 442 |||||||| || ||| ||||||||||| |||| |||||||| |||||||||||||| ||| Sbjct: 69968 gcatggcaattccctttggagaagttcaggcagccacctgaaggagttccatagcttgca 70027 Query: 443 aatgtaatcttagtgatcaaatgcccatc 471 |||||||||| || ||||| ||||||||| Sbjct: 70028 aatgtaatctcagagatcacatgcccatc 70056 Score = 69.9 bits (35), Expect = 7e-09 Identities = 104/127 (81%) Strand = Plus / Plus Query: 201 gaattccacatcacatctcgtctcgagcttctttagtggctgatgacggcgagcactcag 260 |||||||| |||||||||| | |||| ||||| |||| ||||| || || |||| | Sbjct: 69348 gaattccagatcacatctcaccgcgaggctctttggtggttgatggtggggaacacttgg 69407 Query: 261 cctcaactgctaaatcctcgacaactcgtgggcatggatcaccaaatatatcgttcgaaa 320 |||||||||||||||| | || |||| | |||||||||||||||| | |||||| |||| Sbjct: 69408 cctcaactgctaaatctttgaggactcctcggcatggatcaccaaagacatcgttggaaa 69467 Query: 321 cactgat 327 ||||||| Sbjct: 69468 cactgat 69474
>emb|AL713910.2|CNS07YQB Oryza sativa chromosome 12, . BAC OSJNBa0042B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145118 Score = 97.6 bits (49), Expect = 3e-17 Identities = 79/89 (88%) Strand = Plus / Plus Query: 383 gcatggcactttcctatggagaagttctggcaaccacctgacggagttccatagctcgca 442 |||||||| || ||| ||||||||||| |||| |||||||| |||||||||||||| ||| Sbjct: 140262 gcatggcaattccctttggagaagttcaggcagccacctgaaggagttccatagcttgca 140321 Query: 443 aatgtaatcttagtgatcaaatgcccatc 471 |||||||||| || ||||| ||||||||| Sbjct: 140322 aatgtaatctcagagatcacatgcccatc 140350 Score = 69.9 bits (35), Expect = 7e-09 Identities = 104/127 (81%) Strand = Plus / Plus Query: 201 gaattccacatcacatctcgtctcgagcttctttagtggctgatgacggcgagcactcag 260 |||||||| |||||||||| | |||| ||||| |||| ||||| || || |||| | Sbjct: 139642 gaattccagatcacatctcaccgcgaggctctttggtggttgatggtggggaacacttgg 139701 Query: 261 cctcaactgctaaatcctcgacaactcgtgggcatggatcaccaaatatatcgttcgaaa 320 |||||||||||||||| | || |||| | |||||||||||||||| | |||||| |||| Sbjct: 139702 cctcaactgctaaatctttgaggactcctcggcatggatcaccaaagacatcgttggaaa 139761 Query: 321 cactgat 327 ||||||| Sbjct: 139762 cactgat 139768
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 97.6 bits (49), Expect = 3e-17 Identities = 79/89 (88%) Strand = Plus / Plus Query: 383 gcatggcactttcctatggagaagttctggcaaccacctgacggagttccatagctcgca 442 |||||||| || ||| ||||||||||| |||| |||||||| |||||||||||||| ||| Sbjct: 13760941 gcatggcaattccctttggagaagttcaggcagccacctgaaggagttccatagcttgca 13761000 Query: 443 aatgtaatcttagtgatcaaatgcccatc 471 |||||||||| || ||||| ||||||||| Sbjct: 13761001 aatgtaatctcagagatcacatgcccatc 13761029 Score = 69.9 bits (35), Expect = 7e-09 Identities = 104/127 (81%) Strand = Plus / Plus Query: 201 gaattccacatcacatctcgtctcgagcttctttagtggctgatgacggcgagcactcag 260 |||||||| |||||||||| | |||| ||||| |||| ||||| || || |||| | Sbjct: 13760321 gaattccagatcacatctcaccgcgaggctctttggtggttgatggtggggaacacttgg 13760380 Query: 261 cctcaactgctaaatcctcgacaactcgtgggcatggatcaccaaatatatcgttcgaaa 320 |||||||||||||||| | || |||| | |||||||||||||||| | |||||| |||| Sbjct: 13760381 cctcaactgctaaatctttgaggactcctcggcatggatcaccaaagacatcgttggaaa 13760440 Query: 321 cactgat 327 ||||||| Sbjct: 13760441 cactgat 13760447
>emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G11 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155451 Score = 97.6 bits (49), Expect = 3e-17 Identities = 79/89 (88%) Strand = Plus / Plus Query: 383 gcatggcactttcctatggagaagttctggcaaccacctgacggagttccatagctcgca 442 |||||||| || ||| ||||||||||| |||| |||||||| |||||||||||||| ||| Sbjct: 122320 gcatggcaattccctttggagaagttcaggcagccacctgaaggagttccatagcttgca 122379 Query: 443 aatgtaatcttagtgatcaaatgcccatc 471 |||||||||| || ||||| ||||||||| Sbjct: 122380 aatgtaatctcagagatcacatgcccatc 122408 Score = 69.9 bits (35), Expect = 7e-09 Identities = 104/127 (81%) Strand = Plus / Plus Query: 201 gaattccacatcacatctcgtctcgagcttctttagtggctgatgacggcgagcactcag 260 |||||||| |||||||||| | |||| ||||| |||| ||||| || || |||| | Sbjct: 121700 gaattccagatcacatctcaccgcgaggctctttggtggttgatggtggggaacacttgg 121759 Query: 261 cctcaactgctaaatcctcgacaactcgtgggcatggatcaccaaatatatcgttcgaaa 320 |||||||||||||||| | || |||| | |||||||||||||||| | |||||| |||| Sbjct: 121760 cctcaactgctaaatctttgaggactcctcggcatggatcaccaaagacatcgttggaaa 121819 Query: 321 cactgat 327 ||||||| Sbjct: 121820 cactgat 121826
>dbj|AB016081.2| Oryzias latipes OlGC6 gene for guanylyl cyclase C, complete cds Length = 21935 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 ggattatctttacaccaacac 148 ||||||||||||||||||||| Sbjct: 11103 ggattatctttacaccaacac 11083
>ref|XM_546087.2| PREDICTED: Canis familiaris similar to signal-induced proliferation-associated 1 like 2 (predicted) (LOC488969), mRNA Length = 5163 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 caaggcaagagtacttgaag 383 |||||||||||||||||||| Sbjct: 2405 caaggcaagagtacttgaag 2424
>gb|AC151353.2| Xenopus tropicalis clone ISB-4M1, complete sequence Length = 110908 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 cagtaacaaacaatggtaca 56 |||||||||||||||||||| Sbjct: 67603 cagtaacaaacaatggtaca 67622
>emb|BX294189.11| Zebrafish DNA sequence from clone CH211-218D20 in linkage group 9, complete sequence Length = 194025 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 accattaatcaaatcaaatc 34 |||||||||||||||||||| Sbjct: 86074 accattaatcaaatcaaatc 86055
>dbj|AP002346.3| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2387M17, complete sequences Length = 127295 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 377 cttgaagcatggcactttcctatg 400 |||||||||| ||||||||||||| Sbjct: 13818 cttgaagcatagcactttcctatg 13795
>dbj|AP006538.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT18J10, TM0323a, complete sequence Length = 95559 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 accattaatcaaatcaaatc 34 |||||||||||||||||||| Sbjct: 85715 accattaatcaaatcaaatc 85734 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,179,436 Number of Sequences: 3902068 Number of extensions: 3179436 Number of successful extensions: 59420 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59336 Number of HSP's gapped (non-prelim): 84 length of query: 476 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 454 effective length of database: 17,147,199,772 effective search space: 7784828696488 effective search space used: 7784828696488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
