ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01a11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009345.1| Triticum aestivum clone wlm4.pk0022.h12:fis, full... 389 e-105
2gb|AY105676.1| Zea mays PCO101325 mRNA sequence 98 3e-17
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
4dbj|AK111613.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 3e-14
5gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome... 88 3e-14
6dbj|AP006629.1| Lotus japonicus genomic DNA, chromosome 2, clone... 76 1e-10
7emb|AJ517208.1|MTR517208 Medicago truncatula mRNA for phosphatid... 70 7e-09
8gb|DQ118424.2| Phaseolus vulgaris phosphatidylinositol 3-kinase ... 68 3e-08
9gb|DQ118425.1| Phaseolus vulgaris phosphatidylinositol 3-kinase ... 68 3e-08
10gb|L27265.1|SOYPI3K5X Glycine max phosphatidylinositol 3-kinase ... 68 3e-08
11gb|L29770.1|SOYP3KIN Glycine max phosphatidylinositol 3-kinase m... 68 3e-08
12ref|NM_104735.2| Arabidopsis thaliana ATVPS34; inositol or phosp... 58 3e-05
13gb|BT000878.1| Arabidopsis thaliana clone C105027 putative phosp... 58 3e-05
14gb|AY080724.1| Arabidopsis thaliana putative phosphatidylinosito... 58 3e-05
15dbj|AK221298.1| Arabidopsis thaliana mRNA for phosphatidylinosit... 58 3e-05
16gb|AC002292.1|AC002292 Arabidopsis thaliana BAC F8A5, complete s... 58 3e-05
17emb|BX815243.1|CNS0AE14 Arabidopsis thaliana Full-length cDNA Co... 58 3e-05
18gb|U10669.1|U10669 Arabidopsis thaliana phosphatidylinositol 3-k... 58 3e-05
19gb|AY142114.1| Brassica napus phosphatidylinositol 3-kinase mRNA... 50 0.007
20ref|XM_481474.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.026
21gb|AY360390.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.026
22gb|AY360389.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.026
23dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
24dbj|AP005693.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
25dbj|AK111693.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.026
26dbj|AK111577.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.026
27emb|AL391222.1|ATT5K6 Arabidopsis thaliana DNA chromosome 5, BAC... 46 0.10
28emb|AL365234.1|ATT30N20 Arabidopsis thaliana DNA chromosome 5, B... 46 0.10
29gb|AY551095.1| Crassostrea gigas cyclophilin mRNA, complete cds 42 1.6
30gb|AC166823.3| Mus musculus BAC clone RP23-435F22 from chromosom... 42 1.6
31gb|AF259073.1| Mus musculus T-cell receptor alpha locus BAC clon... 42 1.6
32gb|AC161872.7| Mus musculus BAC clone RP24-88E7 from chromosome ... 42 1.6
33ref|XM_418179.1| PREDICTED: Gallus gallus similar to RAN binding... 42 1.6
34gb|AY814757.1| Schistosoma japonicum SJCHGC06826 protein mRNA, c... 42 1.6
35gb|AC126250.4| Mus musculus BAC clone RP23-452K12 from chromosom... 42 1.6
36gb|AC122813.3| Mus musculus BAC clone RP23-230L15 from 14, compl... 42 1.6
37emb|AL035695.17|HS404G5 Human DNA sequence from clone RP3-404G5 ... 42 1.6
38gb|AC103784.2| Homo sapiens chromosome 8, clone RP11-715C17, com... 42 1.6
39gb|AC023405.6| Homo sapiens chromosome 8, clone RP11-199K17, com... 42 1.6
40gb|AE008684.1|AE008684 Mus musculus T-cell receptor alpha/delta ... 42 1.6
41gb|AE008683.1|AE008683 Mus musculus T-cell receptor alpha/delta ... 42 1.6
42gb|AC023762.8| Homo sapiens chromosome 8, clone RP11-401N18, com... 42 1.6
43dbj|AB090237.1| Homo sapiens gene for estrogen receptor alpha, e... 42 1.6
44gb|AC004407.1|AC004407 Mus musculus mbac6, complete sequence 42 1.6
45gb|AC154426.2| Mus musculus BAC clone RP24-199A21 from chromosom... 40 6.4
46gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
47gb|AC134923.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
48emb|BX957306.12| Zebrafish DNA sequence from clone DKEY-119H24 i... 40 6.4
49emb|AL450364.12| Human DNA sequence from clone RP11-499P20 on ch... 40 6.4
50gb|AC096947.2| Homo sapiens chromosome 1 clone RP4-802A10, compl... 40 6.4
51gb|AC005045.2| Homo sapiens BAC clone CTB-12D21 from 7q11.2-q22,... 40 6.4
52dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
53gb|AC023051.21|AC023051 Homo sapiens 12 BAC RP11-666F17 (Roswell... 40 6.4
54gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
55emb|AL845265.20| Mouse DNA sequence from clone RP23-158O8 on chr... 40 6.4
56gb|AC147437.2| Gallus gallus BAC clone CH261-80L21 from chromoso... 40 6.4 
>gb|BT009345.1| Triticum aestivum clone wlm4.pk0022.h12:fis, full insert mRNA
            sequence
          Length = 1191

 Score =  389 bits (196), Expect = e-105
 Identities = 280/306 (91%), Gaps = 4/306 (1%)
 Strand = Plus / Minus

                                                                        
Query: 172  tgttaattacatcacaaacaagaagatttacataagagacatattcacaaattcgtgtta 231
            |||||||||||||||| ||| || |||||||||||   | | ||||||||||| |  || 
Sbjct: 1005 tgttaattacatcacacacaggacgatttacataaagaagacattcacaaatttgcattt 946

                                                                        
Query: 232  cgtaagttagaagtatccaacggggaaataaagtatgtgtgctcatttgcccatcatttc 291
            |||||||||||||| |||||||||||||||||||| ||||||||||||| |||| |||||
Sbjct: 945  cgtaagttagaagtgtccaacggggaaataaagtacgtgtgctcatttgtccattatttc 886

                                                                        
Query: 292  aacgttatgctgtaaatctatcgcattctt-tcctcttaccattcagtctctgcttgaca 350
             ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 885  cacgttatgctgtaaatctatcgcattcgtctcctcttaccattcagtctctgcttgaca 826

                                                                        
Query: 351  tctgttgttatctgttaatagtctgctgcagcctatacaagcagggagaagtggtcatcg 410
            ||||||||||| ||||||||||| ||||||||| |||||| |   |||||||||||||||
Sbjct: 825  tctgttgttatttgttaatagtccgctgcagccaatacaaac---gagaagtggtcatcg 769

                                                                        
Query: 411  ccaatattgagcccatctatggatggtctcaaccatttgagggaacaatgcgctgacact 470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768  ccaatattgagcccatctatggatggtctcaaccatttgagggaacaatgcgctgacact 709

                  
Query: 471  atcgtt 476
            ||||||
Sbjct: 708  atcgtt 703



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 76   tatcaacgcatcaccaccacatattatatataccgattacatcacac 122
            ||||||| |||  ||||||||||||| |||| | |||||||||||||
Sbjct: 1102 tatcaacacattgccaccacatattacatatgctgattacatcacac 1056
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>gb|AY105676.1| Zea mays PCO101325 mRNA sequence
          Length = 586

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 49/49 (100%)
 Strand = Plus / Minus

                                                            
Query: 409 cgccaatattgagcccatctatggatggtctcaaccatttgagggaaca 457
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 cgccaatattgagcccatctatggatggtctcaaccatttgagggaaca 246
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                           
Query: 409     cgccaatattgagcccatctatggatggtctcaaccatttgagggaacaatgcgctgaca 468
               ||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||| 
Sbjct: 4796822 cgccagtattgagcccatctatggattgtctcaaccatctgagggaacaaagcgctgacg 4796881

                       
Query: 469     ctatcgtt 476
               || |||||
Sbjct: 4796882 ctttcgtt 4796889
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>dbj|AK111613.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099I11, full
            insert sequence
          Length = 3065

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                        
Query: 409  cgccaatattgagcccatctatggatggtctcaaccatttgagggaacaatgcgctgaca 468
            ||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||| 
Sbjct: 2741 cgccagtattgagcccatctatggattgtctcaaccatctgagggaacaaagcgctgacg 2682

                    
Query: 469  ctatcgtt 476
            || |||||
Sbjct: 2681 ctttcgtt 2674
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>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
             complete sequence
          Length = 187956

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 62/68 (91%)
 Strand = Plus / Plus

                                                                         
Query: 409   cgccaatattgagcccatctatggatggtctcaaccatttgagggaacaatgcgctgaca 468
             ||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||| 
Sbjct: 69230 cgccagtattgagcccatctatggattgtctcaaccatctgagggaacaaagcgctgacg 69289

                     
Query: 469   ctatcgtt 476
             || |||||
Sbjct: 69290 ctttcgtt 69297
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>dbj|AP006629.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT10B11, TM0008,
             complete sequence
          Length = 116223

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                         
Query: 409   cgccaatattgagcccatctatggatggtctcaaccatttgagggaacaatgcgctgaca 468
             ||||||||||||||||| | ||| |||||||||||||| |||||||||||||| || |||
Sbjct: 26975 cgccaatattgagcccaacgatgaatggtctcaaccatctgagggaacaatgcactcaca 27034

               
Query: 469   ct 470
             ||
Sbjct: 27035 ct 27036
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>emb|AJ517208.1|MTR517208 Medicago truncatula mRNA for phosphatidylinositol 3-kinase (pi3k
            gene)
          Length = 3050

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                               
Query: 411  ccaatattgagcccatctatggatggtctcaaccatttgagggaacaatgc 461
            ||||||||||||||| | ||| |||||||||||||| ||||||||||||||
Sbjct: 2514 ccaatattgagcccaacgatgaatggtctcaaccatctgagggaacaatgc 2464
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>gb|DQ118424.2| Phaseolus vulgaris phosphatidylinositol 3-kinase 1 (PI3K1) gene,
             complete cds
          Length = 13075

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                         
Query: 409   cgccaatattgagcccatctatggatggtctcaaccatttgagggaacaatgcgctgaca 468
             ||||||||||||||||| | |||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 12539 cgccaatattgagcccaacgatggatagtctcaaccatctgagggaataatgcactcaca 12480

               
Query: 469   ct 470
             ||
Sbjct: 12479 ct 12478
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>gb|DQ118425.1| Phaseolus vulgaris phosphatidylinositol 3-kinase 1 (PI3K1) mRNA,
            complete cds
          Length = 2694

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                        
Query: 409  cgccaatattgagcccatctatggatggtctcaaccatttgagggaacaatgcgctgaca 468
            ||||||||||||||||| | |||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 2453 cgccaatattgagcccaacgatggatagtctcaaccatctgagggaataatgcactcaca 2394

              
Query: 469  ct 470
            ||
Sbjct: 2393 ct 2392
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>gb|L27265.1|SOYPI3K5X Glycine max phosphatidylinositol 3-kinase mRNA, complete cds
          Length = 2987

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                        
Query: 409  cgccaatattgagcccatctatggatggtctcaaccatttgagggaacaatgcgctgaca 468
            ||||||||||||||||| | |||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 2502 cgccaatattgagcccaacgatggatagtctcaaccatctgagggaataatgcactcaca 2443

              
Query: 469  ct 470
            ||
Sbjct: 2442 ct 2441
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>gb|L29770.1|SOYP3KIN Glycine max phosphatidylinositol 3-kinase mRNA, complete cds
          Length = 2830

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                        
Query: 409  cgccaatattgagcccatctatggatggtctcaaccatttgagggaacaatgcgctgaca 468
            ||||||||||||||||| | |||||| ||||||||||| |||||||| ||||| || |||
Sbjct: 2552 cgccaatattgagcccaacgatggatagtctcaaccatctgagggaataatgcactcaca 2493

              
Query: 469  ct 470
            ||
Sbjct: 2492 ct 2491
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>ref|NM_104735.2| Arabidopsis thaliana ATVPS34; inositol or phosphatidylinositol
            kinase/ phosphatidylinositol 3-kinase/
            phosphotransferase, alcohol group as acceptor AT1G60490
            (ATVPS34) mRNA, complete cds
          Length = 2764

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 409  cgccaatattgagcccatctatggatggtctcaaccatttgagggaaca 457
            ||||| |||||||||||||| || ||||| ||||||||||| |||||||
Sbjct: 2552 cgccagtattgagcccatctgtgtatggtttcaaccatttgcgggaaca 2504
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>gb|BT000878.1| Arabidopsis thaliana clone C105027 putative phosphatidylinositol
            3-kinase (At1g60490) mRNA, complete cds
          Length = 2476

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 409  cgccaatattgagcccatctatggatggtctcaaccatttgagggaaca 457
            ||||| |||||||||||||| || ||||| ||||||||||| |||||||
Sbjct: 2441 cgccagtattgagcccatctgtgtatggtttcaaccatttgcgggaaca 2393
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>gb|AY080724.1| Arabidopsis thaliana putative phosphatidylinositol 3-kinase
            (At1g60490) mRNA, partial cds
          Length = 1725

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 409  cgccaatattgagcccatctatggatggtctcaaccatttgagggaaca 457
            ||||| |||||||||||||| || ||||| ||||||||||| |||||||
Sbjct: 1496 cgccagtattgagcccatctgtgtatggtttcaaccatttgcgggaaca 1448
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>dbj|AK221298.1| Arabidopsis thaliana mRNA for phosphatidylinositol 3-kinase, partial
            cds, clone: RAFL24-26-M18
          Length = 1308

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 409  cgccaatattgagcccatctatggatggtctcaaccatttgagggaaca 457
            ||||| |||||||||||||| || ||||| ||||||||||| |||||||
Sbjct: 1100 cgccagtattgagcccatctgtgtatggtttcaaccatttgcgggaaca 1052
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>gb|AC002292.1|AC002292 Arabidopsis thaliana BAC F8A5, complete sequence
          Length = 120787

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Plus

                                                             
Query: 409  cgccaatattgagcccatctatggatggtctcaaccatttgagggaaca 457
            ||||| |||||||||||||| || ||||| ||||||||||| |||||||
Sbjct: 9786 cgccagtattgagcccatctgtgtatggtttcaaccatttgcgggaaca 9834
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>emb|BX815243.1|CNS0AE14 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS45ZH02 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 2704

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 409  cgccaatattgagcccatctatggatggtctcaaccatttgagggaaca 457
            ||||| |||||||||||||| || ||||| ||||||||||| |||||||
Sbjct: 2531 cgccagtattgagcccatctgtgtatggtttcaaccatttgcgggaaca 2483
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>gb|U10669.1|U10669 Arabidopsis thaliana phosphatidylinositol 3-kinase (AtVps34) mRNA,
            complete cds
          Length = 2760

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                             
Query: 409  cgccaatattgagcccatctatggatggtctcaaccatttgagggaaca 457
            ||||| |||||||||||||| || ||||| ||||||||||| |||||||
Sbjct: 2562 cgccagtattgagcccatctgtgtatggtttcaaccatttgcgggaaca 2514
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>gb|AY142114.1| Brassica napus phosphatidylinositol 3-kinase mRNA, complete cds
          Length = 2443

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 409  cgccaatattgagcccatctatggatggtctcaaccatttgagggaaca 457
            ||||| ||||||||||| || || ||||| ||||||||||| |||||||
Sbjct: 2438 cgccagtattgagcccacctgtgtatggtttcaaccatttgcgggaaca 2390
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>ref|XM_481474.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2505

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 429  atggatggtctcaaccatttgagggaacaatgcgctgacactatcgtt 476
            ||||||||||||||||| ||||||||| || || |||| ||| |||||
Sbjct: 2481 atggatggtctcaaccacttgagggaagaaagcactgatactttcgtt 2434
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>gb|AY360390.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0074N12,
              complete sequence
          Length = 187972

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                              
Query: 429    atggatggtctcaaccatttgagggaacaatgcgctgacactatcgtt 476
              ||||||||||||||||| ||||||||| || || |||| ||| |||||
Sbjct: 184944 atggatggtctcaaccacttgagggaagaaagcactgatactttcgtt 184991
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>gb|AY360389.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0024A05,
             complete sequence
          Length = 82985

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 429   atggatggtctcaaccatttgagggaacaatgcgctgacactatcgtt 476
             ||||||||||||||||| ||||||||| || || |||| ||| |||||
Sbjct: 65925 atggatggtctcaaccacttgagggaagaaagcactgatactttcgtt 65878
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                                
Query: 429      atggatggtctcaaccatttgagggaacaatgcgctgacactatcgtt 476
                ||||||||||||||||| ||||||||| || || |||| ||| |||||
Sbjct: 12847765 atggatggtctcaaccacttgagggaagaaagcactgatactttcgtt 12847812
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>dbj|AP005693.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0061E21
          Length = 155085

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                             
Query: 429   atggatggtctcaaccatttgagggaacaatgcgctgacactatcgtt 476
             ||||||||||||||||| ||||||||| || || |||| ||| |||||
Sbjct: 48283 atggatggtctcaaccacttgagggaagaaagcactgatactttcgtt 48330
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>dbj|AK111693.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004E13, full
            insert sequence
          Length = 4071

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 429  atggatggtctcaaccatttgagggaacaatgcgctgacactatcgtt 476
            ||||||||||||||||| ||||||||| || || |||| ||| |||||
Sbjct: 3921 atggatggtctcaaccacttgagggaagaaagcactgatactttcgtt 3874
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>dbj|AK111577.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075F18, full
            insert sequence
          Length = 4519

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 429  atggatggtctcaaccatttgagggaacaatgcgctgacactatcgtt 476
            ||||||||||||||||| ||||||||| || || |||| ||| |||||
Sbjct: 4010 atggatggtctcaaccacttgagggaagaaagcactgatactttcgtt 3963
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>emb|AL391222.1|ATT5K6 Arabidopsis thaliana DNA chromosome 5, BAC clone T5K6 (ESSA project)
          Length = 96379

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 192   agaagatttacataagagacata 214
             |||||||||||||||||||||||
Sbjct: 40588 agaagatttacataagagacata 40566
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>emb|AL365234.1|ATT30N20 Arabidopsis thaliana DNA chromosome 5, BAC clone T30N20 (ESSA project)
          Length = 98473

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 192   agaagatttacataagagacata 214
             |||||||||||||||||||||||
Sbjct: 97076 agaagatttacataagagacata 97054
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>gb|AY551095.1| Crassostrea gigas cyclophilin mRNA, complete cds
          Length = 792

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 130 aaatgttgataaatttgcact 150
           |||||||||||||||||||||
Sbjct: 523 aaatgttgataaatttgcact 503
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>gb|AC166823.3| Mus musculus BAC clone RP23-435F22 from chromosome 14, complete sequence
          Length = 221537

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 3      caacaaatgaaaattccattg 23
              |||||||||||||||||||||
Sbjct: 167821 caacaaatgaaaattccattg 167841
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>gb|AF259073.1| Mus musculus T-cell receptor alpha locus BAC clone MBAC15 from
            14D1-D2, complete sequence
          Length = 31638

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 3    caacaaatgaaaattccattg 23
            |||||||||||||||||||||
Sbjct: 7765 caacaaatgaaaattccattg 7785
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>gb|AC161872.7| Mus musculus BAC clone RP24-88E7 from chromosome 14, complete sequence
          Length = 226399

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 3      caacaaatgaaaattccattg 23
              |||||||||||||||||||||
Sbjct: 194342 caacaaatgaaaattccattg 194322
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>ref|XM_418179.1| PREDICTED: Gallus gallus similar to RAN binding protein 3 isoform
            RANBP3-b; RAN-binding protein-3 (LOC420058), mRNA
          Length = 3150

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 370  agtctgctgcagcctatacaa 390
            |||||||||||||||||||||
Sbjct: 986  agtctgctgcagcctatacaa 1006
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>gb|AY814757.1| Schistosoma japonicum SJCHGC06826 protein mRNA, complete cds
          Length = 670

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 6   caaatgaaaattccattgttt 26
           |||||||||||||||||||||
Sbjct: 463 caaatgaaaattccattgttt 443
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>gb|AC126250.4| Mus musculus BAC clone RP23-452K12 from chromosome 14, complete sequence
          Length = 194924

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 3      caacaaatgaaaattccattg 23
              |||||||||||||||||||||
Sbjct: 181836 caacaaatgaaaattccattg 181816
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>gb|AC122813.3| Mus musculus BAC clone RP23-230L15 from 14, complete sequence
          Length = 221468

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 3     caacaaatgaaaattccattg 23
             |||||||||||||||||||||
Sbjct: 83614 caacaaatgaaaattccattg 83594
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>emb|AL035695.17|HS404G5 Human DNA sequence from clone RP3-404G5 on chromosome 6q24.1-25.2
              Contains the 5' end of the ESR1 gene for estrogen receptor
              1, complete sequence
          Length = 119737

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 376    ctgcagcctatacaagcaggg 396
              |||||||||||||||||||||
Sbjct: 106124 ctgcagcctatacaagcaggg 106104
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>gb|AC103784.2| Homo sapiens chromosome 8, clone RP11-715C17, complete sequence
          Length = 175745

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 124  cagaccaaatgttgataaatt 144
            |||||||||||||||||||||
Sbjct: 9507 cagaccaaatgttgataaatt 9487
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>gb|AC023405.6| Homo sapiens chromosome 8, clone RP11-199K17, complete sequence
          Length = 151859

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 124    cagaccaaatgttgataaatt 144
              |||||||||||||||||||||
Sbjct: 122080 cagaccaaatgttgataaatt 122100
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>gb|AE008684.1|AE008684 Mus musculus T-cell receptor alpha/delta locus  section 2 of 4 of the
              complete region
          Length = 400099

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 3      caacaaatgaaaattccattg 23
              |||||||||||||||||||||
Sbjct: 365558 caacaaatgaaaattccattg 365578
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>gb|AE008683.1|AE008683 Mus musculus T-cell receptor alpha/delta locus  section 1 of 4 of the
              complete region
          Length = 404892

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 3      caacaaatgaaaattccattg 23
              |||||||||||||||||||||
Sbjct: 364540 caacaaatgaaaattccattg 364560
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>gb|AC023762.8| Homo sapiens chromosome 8, clone RP11-401N18, complete sequence
          Length = 120800

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 124    cagaccaaatgttgataaatt 144
              |||||||||||||||||||||
Sbjct: 108987 cagaccaaatgttgataaatt 108967
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>dbj|AB090237.1| Homo sapiens gene for estrogen receptor alpha, exon 1a, 1b, 2
          Length = 56124

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 376  ctgcagcctatacaagcaggg 396
            |||||||||||||||||||||
Sbjct: 2734 ctgcagcctatacaagcaggg 2754
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>gb|AC004407.1|AC004407 Mus musculus mbac6, complete sequence
          Length = 119865

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 3     caacaaatgaaaattccattg 23
             |||||||||||||||||||||
Sbjct: 60989 caacaaatgaaaattccattg 61009
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>gb|AC154426.2| Mus musculus BAC clone RP24-199A21 from chromosome 14, complete
             sequence
          Length = 210568

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   aattacatcacaaacaagaa 195
             ||||||||||||||||||||
Sbjct: 17570 aattacatcacaaacaagaa 17551
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>gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
            OSJNBa0082P17, complete sequence
          Length = 157539

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 4    aacaaatgaaaattccattgtttg 27
            ||||||||||||||| ||||||||
Sbjct: 5722 aacaaatgaaaattcaattgtttg 5699
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>gb|AC134923.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0030I07, complete sequence
          Length = 122733

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     aacaaatgaaaattccattgtttg 27
             ||||||||||||||| ||||||||
Sbjct: 57703 aacaaatgaaaattcaattgtttg 57680
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>emb|BX957306.12| Zebrafish DNA sequence from clone DKEY-119H24 in linkage group 1,
            complete sequence
          Length = 224487

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 389  aagcagggagaagtggtcat 408
            ||||||||||||||||||||
Sbjct: 5427 aagcagggagaagtggtcat 5408
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>emb|AL450364.12| Human DNA sequence from clone RP11-499P20 on chromosome 10 Contains
             part of the CACNB2 gene for calcium channel
             voltage-dependent beta 2 subunit and the 3' end of a novel
             gene, complete sequence
          Length = 38089

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 318   tctttcctcttaccattcag 337
             ||||||||||||||||||||
Sbjct: 14390 tctttcctcttaccattcag 14371
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>gb|AC096947.2| Homo sapiens chromosome 1 clone RP4-802A10, complete sequence
          Length = 148730

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 370   agtctgctgcagcctataca 389
             ||||||||||||||||||||
Sbjct: 28923 agtctgctgcagcctataca 28904
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>gb|AC005045.2| Homo sapiens BAC clone CTB-12D21 from 7q11.2-q22, complete sequence
          Length = 123947

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   catttgcccatcatttcaac 294
             ||||||||||||||||||||
Sbjct: 75173 catttgcccatcatttcaac 75192
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 4        aacaaatgaaaattccattgtttg 27
                ||||||||||||||| ||||||||
Sbjct: 26595445 aacaaatgaaaattcaattgtttg 26595422
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>gb|AC023051.21|AC023051 Homo sapiens 12 BAC RP11-666F17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 185930

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 181    catcacaaacaagaagatttacataaga 208
              ||||||||||||||| | ||||||||||
Sbjct: 135469 catcacaaacaagaaaacttacataaga 135496
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 4        aacaaatgaaaattccattgtttg 27
                ||||||||||||||| ||||||||
Sbjct: 26920709 aacaaatgaaaattcaattgtttg 26920686
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>emb|AL845265.20| Mouse DNA sequence from clone RP23-158O8 on chromosome 2, complete
             sequence
          Length = 195031

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 457   aatgcgctgacactatcgtt 476
             ||||||||||||||||||||
Sbjct: 79134 aatgcgctgacactatcgtt 79153
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>gb|AC147437.2| Gallus gallus BAC clone CH261-80L21 from chromosome unknown, complete
              sequence
          Length = 221338

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 382    cctatacaagcagggagaag 401
              ||||||||||||||||||||
Sbjct: 138544 cctatacaagcagggagaag 138525


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,852,739
Number of Sequences: 3902068
Number of extensions: 4852739
Number of successful extensions: 97388
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97210
Number of HSP's gapped (non-prelim): 175
length of query: 476
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 454
effective length of database: 17,147,199,772
effective search space: 7784828696488
effective search space used: 7784828696488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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