ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DIAC_RAT (Q01460) Di-N-acetylchitobiase precursor (EC 3.2.1.-) 32 0.70
2MAOX_MOUSE (P06801) NADP-dependent malic enzyme (EC 1.1.1.40) (N... 32 0.70
3MAO3_BACSU (O34389) Probable NAD-dependent malic enzyme 3 (EC 1.... 32 0.70
4MAOX_RAT (P13697) NADP-dependent malic enzyme (EC 1.1.1.40) (NAD... 31 1.6
5EPHB3_BRARE (O13147) Ephrin type-B receptor 3 (EC 2.7.10.1) (Tyr... 30 2.7
6ATM_CANGA (Q6FRZ9) Serine/threonine-protein kinase TEL1 (EC 2.7.... 30 2.7
7MOAA1_MYCTU (O05786) Molybdenum cofactor biosynthesis protein A 1 30 3.5
8MOAA1_MYCBO (Q7TX84) Molybdenum cofactor biosynthesis protein A 1 30 3.5
9ERG7_PNECA (Q96WJ0) Lanosterol synthase (EC 5.4.99.7) (Oxidosqua... 29 4.5
10RDRP_SHMV (P89202) RNA-directed RNA polymerase (EC 2.7.7.48) (18... 29 4.5
11DIAC_MOUSE (Q8R242) Di-N-acetylchitobiase precursor (EC 3.2.1.-) 28 7.7
12MAOX_HUMAN (P48163) NADP-dependent malic enzyme (EC 1.1.1.40) (N... 28 7.7
13DIAC_HUMAN (Q01459) Di-N-acetylchitobiase precursor (EC 3.2.1.-) 28 7.7

>DIAC_RAT (Q01460) Di-N-acetylchitobiase precursor (EC 3.2.1.-)|
          Length = 367

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 4/30 (13%)
 Frame = -3

Query: 379 YFEYEDPNGPVNQIW----RQVSMKAPLIK 302
           Y+ Y+DP G ++Q+W    R +S+KA  +K
Sbjct: 300 YYNYKDPTGRLHQVWYDNPRSISLKAAFVK 329



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>MAOX_MOUSE (P06801) NADP-dependent malic enzyme (EC 1.1.1.40) (NADP-ME) (Malic|
           enzyme 1)
          Length = 572

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 24/75 (32%), Positives = 36/75 (48%)
 Frame = +2

Query: 92  GTEKEALLSIYMYIALQHPKFRQYRHKSFLEAAKTILAGSKYLARC*TDARAISFISASF 271
           GTE E LL   +YI L+H + R   + +FL+      A SKY   C      I F   + 
Sbjct: 196 GTENEELLKDPLYIGLRHRRVRGPEYDAFLDEFME-AASSKYGMNC-----LIQFEDFAN 249

Query: 272 N*AFVPVNQQLDQWC 316
             AF  +N+  +++C
Sbjct: 250 RNAFRLLNKYRNKYC 264



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>MAO3_BACSU (O34389) Probable NAD-dependent malic enzyme 3 (EC 1.1.1.38)|
           (NAD-ME 3)
          Length = 566

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +2

Query: 65  RALAGYVQSGTEKEALLSIYMYIALQHPKFRQYRHKSFLE 184
           R LA  + +GT +E+LL+  +Y+  QH + R  R+  F++
Sbjct: 192 RVLAVVLDAGTNQESLLNDPLYVGNQHSRVRGERYDQFID 231



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>MAOX_RAT (P13697) NADP-dependent malic enzyme (EC 1.1.1.40) (NADP-ME) (Malic|
           enzyme 1)
          Length = 572

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 24/75 (32%), Positives = 36/75 (48%)
 Frame = +2

Query: 92  GTEKEALLSIYMYIALQHPKFRQYRHKSFLEAAKTILAGSKYLARC*TDARAISFISASF 271
           GTE E LL   +YI L+H + R   + +FL+      A SKY   C      I F   + 
Sbjct: 196 GTENEELLKDPLYIGLRHRRVRGPEYDAFLDEFME-AASSKYGMNC-----LIQFEDFAN 249

Query: 272 N*AFVPVNQQLDQWC 316
             AF  +N+  +++C
Sbjct: 250 LNAFRLLNKYRNKYC 264



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>EPHB3_BRARE (O13147) Ephrin type-B receptor 3 (EC 2.7.10.1) (Tyrosine-protein|
           kinase receptor ZEK3) (EPH-like kinase 3) (Fragment)
          Length = 500

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 15/79 (18%)
 Frame = -3

Query: 442 LRKVSSERILEYQREIQR-----VKHY---FEYEDPNGPVNQIWRQVSMKAPLIKLLINR 287
           LR+  +   LEY  ++Q+     VK Y   F YEDPN  V++  R++ +    I+ +I  
Sbjct: 136 LRRQRTGSELEYTEKLQQYVSPGVKVYIDPFTYEDPNEAVHEFAREIDISCVKIEEVIGA 195

Query: 286 NK-------RLVERGTNET 251
            +       RL + G  ET
Sbjct: 196 GEFGEVCRGRLKQAGRKET 214



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>ATM_CANGA (Q6FRZ9) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)|
            (DNA-damage checkpoint kinase TEL1) (Telomere length
            regulation protein 1) (ATM homolog)
          Length = 2763

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 83   VQSGTEKEALLSIYMYIALQHPKFRQYRHKSFLEAAKTILAGSKY 217
            VQS ++KE +L+         PKFR +   SF++A   I A  KY
Sbjct: 2519 VQSKSDKERILTYLDITKKISPKFRNFFFNSFIDANGWICAKRKY 2563



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>MOAA1_MYCTU (O05786) Molybdenum cofactor biosynthesis protein A 1|
          Length = 359

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 418 ILEYQREIQRVKHYFEYEDPNGPVNQIWRQVSMKAPLIKLLINRNKRL 275
           ++E+ R +     + EY D  G  +  W +V  KA +++ L  R  R+
Sbjct: 193 LIEFARTVNAEVRFIEYMDVGGATHWAWEKVFTKANMLESLEKRYGRI 240



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>MOAA1_MYCBO (Q7TX84) Molybdenum cofactor biosynthesis protein A 1|
          Length = 359

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 418 ILEYQREIQRVKHYFEYEDPNGPVNQIWRQVSMKAPLIKLLINRNKRL 275
           ++E+ R +     + EY D  G  +  W +V  KA +++ L  R  R+
Sbjct: 193 LIEFARTVNAEVRFIEYMDVGGATHWAWEKVFTKANMLESLEKRYGRI 240



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>ERG7_PNECA (Q96WJ0) Lanosterol synthase (EC 5.4.99.7)|
           (Oxidosqualene--lanosterol cyclase)
           (2,3-epoxysqualene--lanosterol cyclase) (OSC)
          Length = 719

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 166 PILPEFWMLQRYIHIYGQQGFLFSS*LYI 80
           PILPEFWML  ++ I+  + ++ +  +Y+
Sbjct: 205 PILPEFWMLPEWLPIHPSRWWVHTRAVYL 233



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>RDRP_SHMV (P89202) RNA-directed RNA polymerase (EC 2.7.7.48) (186 kDa protein)|
            [Contains: Methyltransferase/RNA helicase (MT/HEL) (128
            kDa protein)]
          Length = 1629

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 8/33 (24%)
 Frame = -1

Query: 162  YCLNFGCCSAIYIYMDSK--------ASFSVPD 88
            +C+N  C S++YI+ D K         +FS+PD
Sbjct: 931  FCINISCVSSVYIFGDRKQIPFINRVMNFSIPD 963



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>DIAC_MOUSE (Q8R242) Di-N-acetylchitobiase precursor (EC 3.2.1.-)|
          Length = 366

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
 Frame = -3

Query: 379 YFEYEDPNGPVNQIW----RQVSMKAPLIK 302
           Y+ Y+DP G  +Q+W    + +S+KA  +K
Sbjct: 299 YYNYKDPAGRFHQVWYDNPQSISLKAAYVK 328



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>MAOX_HUMAN (P48163) NADP-dependent malic enzyme (EC 1.1.1.40) (NADP-ME) (Malic|
           enzyme 1)
          Length = 572

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 23/75 (30%), Positives = 35/75 (46%)
 Frame = +2

Query: 92  GTEKEALLSIYMYIALQHPKFRQYRHKSFLEAAKTILAGSKYLARC*TDARAISFISASF 271
           GTE E LL   +YI L+  + R   +  FL+     ++ SKY   C      I F   + 
Sbjct: 196 GTENEELLKDPLYIGLRQRRVRGSEYDDFLDEFMEAVS-SKYGMNC-----LIQFEDFAN 249

Query: 272 N*AFVPVNQQLDQWC 316
             AF  +N+  +Q+C
Sbjct: 250 VNAFRLLNKYRNQYC 264



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>DIAC_HUMAN (Q01459) Di-N-acetylchitobiase precursor (EC 3.2.1.-)|
          Length = 385

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = -3

Query: 379 YFEYEDPNGPVNQIW----RQVSMKAPLIKLLINRNKRLVERGTNETDCSCI 236
           Y+ Y+DP G  +Q+W    + +S+KA  I     +N RL  RG    + +C+
Sbjct: 315 YYNYKDPAGHFHQVWYDNPQSISLKATYI-----QNYRL--RGIGMWNANCL 359


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,812,458
Number of Sequences: 219361
Number of extensions: 1170636
Number of successful extensions: 2975
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2975
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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