ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl01a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_186358.1| Oryza sativa (japonica cultivar-group), mRNA 194 2e-46
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
3dbj|AP003866.3| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
4gb|AC130532.3| Mus musculus BAC clone RP23-189G24 from 7, comple... 44 0.38
5gb|AY021840.1| Oryza sativa microsatellite MRG4165 containing (T... 42 1.5
6gb|BC067709.1| Danio rerio zgc:85942, mRNA (cDNA clone MGC:85942... 42 1.5
7ref|NM_212930.1| Danio rerio zgc:85942 (zgc:85942), mRNA 42 1.5
8gb|AC005713.8|AC005713 Drosophila melanogaster, chromosome 2R, r... 42 1.5
9gb|AC007520.8|AC007520 Drosophila melanogaster, chromosome 2R, r... 42 1.5
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
11dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 42 1.5
12dbj|AP003991.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
13gb|AE003804.4| Drosophila melanogaster chromosome 2R, section 46... 42 1.5
14emb|AL844593.6| Mouse DNA sequence from clone RP23-227F18 on chr... 42 1.5
15gb|AC146896.15| Mus musculus chromosome X clone xcat-28-97f16, c... 40 6.0
16gb|AY751464.1| Danio rerio carbamoyl-phosphate synthetase 2, asp... 40 6.0
17gb|AC140985.3| Mus musculus BAC clone RP23-60H23 from chromosome... 40 6.0
18gb|AY880246.1| Danio rerio carbamoyl-phosphate synthetase 2, asp... 40 6.0
19emb|BX950203.15| Zebrafish DNA sequence from clone CH211-108P22,... 40 6.0
20gb|AC093447.17| Mus musculus strain 129/Sv clone ct7-25g12 map X... 40 6.0
21gb|AC121246.28| Medicago truncatula clone mth2-35m8, complete se... 40 6.0
22emb|AL161913.11| Human DNA sequence from clone RP11-64P11 on chr... 40 6.0
23gb|AF036092.3| Bovine adenovirus 4 strain THT/62, complete genome 40 6.0
24emb|AL713960.17| Mouse DNA sequence from clone RP23-448I9 on chr... 40 6.0
25emb|AL805943.6| Mouse DNA sequence from clone RP23-86O13 on chro... 40 6.0
26gb|AC119409.25| Medicago truncatula clone mth2-10i9, complete se... 40 6.0
27gb|AC068776.17| Homo sapiens 3 BAC RP11-280F2 (Roswell Park Canc... 40 6.0
28gb|AC104125.3| Homo sapiens chromosome 5 clone RP11-432G16, comp... 40 6.0
29gb|AC148188.3| Saimiri boliviensis boliviensis clone CH254-64N20... 40 6.0
30ref|NM_001009884.1| Danio rerio carbamoyl-phosphate synthetase 2... 40 6.0
31dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
32gb|AC098800.3| Homo sapiens BAC clone RP11-666P13 from 2, comple... 40 6.0
33gb|AC016903.3| Homo sapiens BAC clone RP11-259I20 from 2, comple... 40 6.0
34dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
35gb|BC058510.1| Danio rerio zona pellucida glycoprotein 2.4, mRNA... 40 6.0
36dbj|AP002856.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.0
37gb|AC105072.9| Mus musculus chromosome 5, clone RP24-167C6, comp... 40 6.0
38emb|CT025555.7| Mouse DNA sequence from clone RP24-84E11 on chro... 40 6.0
39gb|AC151372.3| Aotus nancymaae clone CH258-368D16, complete sequ... 40 6.0
40emb|AL732391.7| Mouse DNA sequence from clone RP23-364H13 on chr... 40 6.0
41gb|AC140360.4| Mus musculus BAC clone RP24-241G4 from chromosome... 40 6.0 
>ref|NM_186358.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1362

 Score =  194 bits (98), Expect = 2e-46
 Identities = 176/202 (87%)
 Strand = Plus / Minus

                                                                        
Query: 231  gaacagatgcacgagcaatcagtttcattagtgcctctttcaactaggcgtttgttccgg 290
            |||||||||||||||||||| ||| |||| || |||||||||||||||||||| |  |||
Sbjct: 1334 gaacagatgcacgagcaatctgttccattggtacctctttcaactaggcgtttatcgcgg 1275

                                                                        
Query: 291  ttaatcaacagcttgatcagtggtgctttcatggaaacttggcgccatatttgattcact 350
            ||||||||||||||||||| |||||| ||    ||||||||| ||||||| |||||||||
Sbjct: 1274 ttaatcaacagcttgatcaatggtgcctttgaagaaacttggtgccatatctgattcact 1215

                                                                        
Query: 351  ggcccattcggatcttcatactcaaagtaatgttttaccctttgtatttctctttgatac 410
            || || || ||||||||||||||||| |||||||||||| ||| ||||||||| || |||
Sbjct: 1214 ggtccgtttggatcttcatactcaaaataatgttttaccttttttatttctctctggtac 1155

                                  
Query: 411  tccagaatccgctctgaactga 432
            || ||||||| || ||||||||
Sbjct: 1154 tctagaatcctctgtgaactga 1133
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  165 bits (83), Expect = 2e-37
 Identities = 140/159 (88%)
 Strand = Plus / Minus

                                                                            
Query: 231      gaacagatgcacgagcaatcagtttcattagtgcctctttcaactaggcgtttgttccgg 290
                |||||||||||||||||||| ||| |||| || |||||||||||||||||||| |  |||
Sbjct: 22729998 gaacagatgcacgagcaatctgttccattggtacctctttcaactaggcgtttatcgcgg 22729939

                                                                            
Query: 291      ttaatcaacagcttgatcagtggtgctttcatggaaacttggcgccatatttgattcact 350
                ||||||||||||||||||| |||||| ||    ||||||||| ||||||| |||||||||
Sbjct: 22729938 ttaatcaacagcttgatcaatggtgcctttgaagaaacttggtgccatatctgattcact 22729879

                                                       
Query: 351      ggcccattcggatcttcatactcaaagtaatgttttacc 389
                || || || ||||||||||||||||| ||||||||||||
Sbjct: 22729878 ggtccgtttggatcttcatactcaaaataatgttttacc 22729840
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>dbj|AP003866.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1092_A07
          Length = 137081

 Score =  165 bits (83), Expect = 2e-37
 Identities = 140/159 (88%)
 Strand = Plus / Minus

                                                                         
Query: 231   gaacagatgcacgagcaatcagtttcattagtgcctctttcaactaggcgtttgttccgg 290
             |||||||||||||||||||| ||| |||| || |||||||||||||||||||| |  |||
Sbjct: 49340 gaacagatgcacgagcaatctgttccattggtacctctttcaactaggcgtttatcgcgg 49281

                                                                         
Query: 291   ttaatcaacagcttgatcagtggtgctttcatggaaacttggcgccatatttgattcact 350
             ||||||||||||||||||| |||||| ||    ||||||||| ||||||| |||||||||
Sbjct: 49280 ttaatcaacagcttgatcaatggtgcctttgaagaaacttggtgccatatctgattcact 49221

                                                    
Query: 351   ggcccattcggatcttcatactcaaagtaatgttttacc 389
             || || || ||||||||||||||||| ||||||||||||
Sbjct: 49220 ggtccgtttggatcttcatactcaaaataatgttttacc 49182
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>gb|AC130532.3| Mus musculus BAC clone RP23-189G24 from 7, complete sequence
          Length = 207333

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 248    atcagtttcattagtgcctctt 269
              ||||||||||||||||||||||
Sbjct: 132087 atcagtttcattagtgcctctt 132066
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>gb|AY021840.1| Oryza sativa microsatellite MRG4165 containing (TA)X38, closest to
           marker C2168, genomic sequence
          Length = 276

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 113 ctgtccatatatatgtatata 133
           |||||||||||||||||||||
Sbjct: 191 ctgtccatatatatgtatata 171
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>gb|BC067709.1| Danio rerio zgc:85942, mRNA (cDNA clone MGC:85942 IMAGE:6963406),
            complete cds
          Length = 1712

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 113  ctgtccatatatatgtatata 133
            |||||||||||||||||||||
Sbjct: 1524 ctgtccatatatatgtatata 1544
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>ref|NM_212930.1| Danio rerio zgc:85942 (zgc:85942), mRNA
          Length = 1712

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 113  ctgtccatatatatgtatata 133
            |||||||||||||||||||||
Sbjct: 1524 ctgtccatatatatgtatata 1544
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>gb|AC005713.8|AC005713 Drosophila melanogaster, chromosome 2R, region 54A1-54B2, BAC clone
             BACR48A11, complete sequence
          Length = 157507

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 115   gtccatatatatgtatatagc 135
             |||||||||||||||||||||
Sbjct: 90299 gtccatatatatgtatatagc 90279
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>gb|AC007520.8|AC007520 Drosophila melanogaster, chromosome 2R, region 53D-54A, BAC clone
              BACR11M15, complete sequence
          Length = 170994

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 115    gtccatatatatgtatatagc 135
              |||||||||||||||||||||
Sbjct: 162937 gtccatatatatgtatatagc 162917
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 113     ctgtccatatatatgtatata 133
               |||||||||||||||||||||
Sbjct: 7748958 ctgtccatatatatgtatata 7748938
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 71      ttagcaggatatgtacaatca 91
               |||||||||||||||||||||
Sbjct: 3359697 ttagcaggatatgtacaatca 3359717
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>dbj|AP003991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1077_A12
          Length = 149089

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 113   ctgtccatatatatgtatata 133
             |||||||||||||||||||||
Sbjct: 85223 ctgtccatatatatgtatata 85203
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>gb|AE003804.4| Drosophila melanogaster chromosome 2R, section 46 of 73 of the complete
              sequence
          Length = 260337

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 115    gtccatatatatgtatatagc 135
              |||||||||||||||||||||
Sbjct: 226062 gtccatatatatgtatatagc 226042
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>emb|AL844593.6| Mouse DNA sequence from clone RP23-227F18 on chromosome 2, complete
             sequence
          Length = 86923

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 366   tcatactcaaagtaatgtttt 386
             |||||||||||||||||||||
Sbjct: 31158 tcatactcaaagtaatgtttt 31178
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>gb|AC146896.15| Mus musculus chromosome X clone xcat-28-97f16, complete sequence
          Length = 163375

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   gtttcattagtgcctctttc 271
             ||||||||||||||||||||
Sbjct: 78677 gtttcattagtgcctctttc 78658
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>gb|AY751464.1| Danio rerio carbamoyl-phosphate synthetase 2, aspartate
           transcarbamylase, and dihydroorotase (cad) mRNA,
           complete cds
          Length = 6937

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 311 tggtgctttcatggaaactt 330
           ||||||||||||||||||||
Sbjct: 745 tggtgctttcatggaaactt 726
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>gb|AC140985.3| Mus musculus BAC clone RP23-60H23 from chromosome 13, complete sequence
          Length = 222741

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    tgtccatatatatgtatata 133
              ||||||||||||||||||||
Sbjct: 191762 tgtccatatatatgtatata 191743
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>gb|AY880246.1| Danio rerio carbamoyl-phosphate synthetase 2, aspartate
           transcarbamylase, and dihydroorotase (cad) mRNA,
           complete cds
          Length = 7358

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 311 tggtgctttcatggaaactt 330
           ||||||||||||||||||||
Sbjct: 727 tggtgctttcatggaaactt 708
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>emb|BX950203.15| Zebrafish DNA sequence from clone CH211-108P22, complete sequence
          Length = 129504

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 389   cctttgtatttctctttgat 408
             ||||||||||||||||||||
Sbjct: 30661 cctttgtatttctctttgat 30680
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>gb|AC093447.17| Mus musculus strain 129/Sv clone ct7-25g12 map X, complete sequence
          Length = 188211

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 252    gtttcattagtgcctctttc 271
              ||||||||||||||||||||
Sbjct: 103250 gtttcattagtgcctctttc 103231
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>gb|AC121246.28| Medicago truncatula clone mth2-35m8, complete sequence
          Length = 124137

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 386   taccctttgtatttctcttt 405
             ||||||||||||||||||||
Sbjct: 11615 taccctttgtatttctcttt 11596
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>emb|AL161913.11| Human DNA sequence from clone RP11-64P11 on chromosome 9, complete
             sequence
          Length = 137897

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   tgtccatatatatgtatata 133
             ||||||||||||||||||||
Sbjct: 22216 tgtccatatatatgtatata 22235
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>gb|AF036092.3| Bovine adenovirus 4 strain THT/62, complete genome
          Length = 31301

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 113  ctgtccatatatatgtatat 132
            ||||||||||||||||||||
Sbjct: 2234 ctgtccatatatatgtatat 2215
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>emb|AL713960.17| Mouse DNA sequence from clone RP23-448I9 on chromosome 11 Contains the
             5' end of the Car10 gene for carbonic anhydrase 10 and one
             CpG island, complete sequence
          Length = 203449

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   tgtccatatatatgtatata 133
             ||||||||||||||||||||
Sbjct: 64769 tgtccatatatatgtatata 64788
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>emb|AL805943.6| Mouse DNA sequence from clone RP23-86O13 on chromosome 4 Contains a opsin
              1 (cone pigments) (Opn1) pseudogene, complete sequence
          Length = 192561

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    aaattcaggcaatataggca 168
              ||||||||||||||||||||
Sbjct: 144735 aaattcaggcaatataggca 144716
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>gb|AC119409.25| Medicago truncatula clone mth2-10i9, complete sequence
          Length = 127954

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 386   taccctttgtatttctcttt 405
             ||||||||||||||||||||
Sbjct: 61922 taccctttgtatttctcttt 61941
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>gb|AC068776.17| Homo sapiens 3 BAC RP11-280F2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 162446

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   tgtccatatatatgtatata 133
             ||||||||||||||||||||
Sbjct: 43819 tgtccatatatatgtatata 43800
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>gb|AC104125.3| Homo sapiens chromosome 5 clone RP11-432G16, complete sequence
          Length = 180225

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   tgtccatatatatgtatata 133
             ||||||||||||||||||||
Sbjct: 79979 tgtccatatatatgtatata 79998
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>gb|AC148188.3| Saimiri boliviensis boliviensis clone CH254-64N20, complete sequence
          Length = 194092

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 364   cttcatactcaaagtaatgtttta 387
             |||||||||||||||||| |||||
Sbjct: 90029 cttcatactcaaagtaatctttta 90052
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>ref|NM_001009884.1| Danio rerio carbamoyl-phosphate synthetase 2, aspartate
           transcarbamylase, and dihydroorotase (cad), mRNA
          Length = 6937

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 311 tggtgctttcatggaaactt 330
           ||||||||||||||||||||
Sbjct: 745 tggtgctttcatggaaactt 726
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 115     gtccatatatatgtatatag 134
               ||||||||||||||||||||
Sbjct: 8678375 gtccatatatatgtatatag 8678394
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>gb|AC098800.3| Homo sapiens BAC clone RP11-666P13 from 2, complete sequence
          Length = 142003

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   ggtgctttcatggaaacttg 331
             ||||||||||||||||||||
Sbjct: 33346 ggtgctttcatggaaacttg 33327
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>gb|AC016903.3| Homo sapiens BAC clone RP11-259I20 from 2, complete sequence
          Length = 172512

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   tccatatatatgtatatagc 135
             ||||||||||||||||||||
Sbjct: 48420 tccatatatatgtatatagc 48439
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>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0057D11
          Length = 190790

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    gtccatatatatgtatatag 134
              ||||||||||||||||||||
Sbjct: 108171 gtccatatatatgtatatag 108190
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>gb|BC058510.1| Danio rerio zona pellucida glycoprotein 2.4, mRNA (cDNA clone
           MGC:63627 IMAGE:5603789), complete cds
          Length = 2247

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 311 tggtgctttcatggaaactt 330
           ||||||||||||||||||||
Sbjct: 759 tggtgctttcatggaaactt 740
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>dbj|AP002856.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-816H13, complete
             sequence
          Length = 227942

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 44    taatatctactgaagaactgaagg 67
             |||||||| |||||||||||||||
Sbjct: 54714 taatatctgctgaagaactgaagg 54737
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>gb|AC105072.9| Mus musculus chromosome 5, clone RP24-167C6, complete sequence
          Length = 173710

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 392   ttgtatttctctttgatact 411
             ||||||||||||||||||||
Sbjct: 29912 ttgtatttctctttgatact 29931
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>emb|CT025555.7| Mouse DNA sequence from clone RP24-84E11 on chromosome 13, complete
             sequence
          Length = 197389

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   tgtccatatatatgtatata 133
             ||||||||||||||||||||
Sbjct: 29960 tgtccatatatatgtatata 29941
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>gb|AC151372.3| Aotus nancymaae clone CH258-368D16, complete sequence
          Length = 139897

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 364   cttcatactcaaagtaatgtttta 387
             |||||||||||||||||| |||||
Sbjct: 13969 cttcatactcaaagtaatttttta 13992
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>emb|AL732391.7| Mouse DNA sequence from clone RP23-364H13 on chromosome X, complete
              sequence
          Length = 173841

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 252    gtttcattagtgcctctttc 271
              ||||||||||||||||||||
Sbjct: 131219 gtttcattagtgcctctttc 131200
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>gb|AC140360.4| Mus musculus BAC clone RP24-241G4 from chromosome 12, complete sequence
          Length = 181901

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 46     atatctactgaagaactgaagggc 69
              ||||||||||||||| ||||||||
Sbjct: 109146 atatctactgaagaaatgaagggc 109169


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,501,473
Number of Sequences: 3902068
Number of extensions: 4501473
Number of successful extensions: 243751
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 243312
Number of HSP's gapped (non-prelim): 436
length of query: 444
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 422
effective length of database: 17,147,199,772
effective search space: 7236118303784
effective search space used: 7236118303784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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