>RANB3_MACFA (Q4R4T9) Ran-binding protein 3 (RanBP3)|
          Length = 499

 Score = 32.7 bits (73), Expect = 0.47
 Identities = 26/76 (34%), Positives = 36/76 (47%)
 Frame = -2

Query: 373 LLLKSVDAAQSELAGYPIASGPAESAITESYVASEGSIQETSIQALLNQGLVGSSSVMRK 194
           L+ +SVD A  E AG+P A  P  +     Y++S       S  A  N+ + G +   R 
Sbjct: 204 LINESVDEADMENAGHPSADTPTATNYFLQYISSSLENSTNSADASSNKFVFGQNMSER- 262

Query: 193 QNTSVLSNMGLSEVSS 146
               VLS   L+EVSS
Sbjct: 263 ----VLSPPKLNEVSS 274

>RANB3_HUMAN (Q9H6Z4) Ran-binding protein 3 (RanBP3)|
          Length = 567

 Score = 32.7 bits (73), Expect = 0.47
 Identities = 26/76 (34%), Positives = 36/76 (47%)
 Frame = -2

Query: 373 LLLKSVDAAQSELAGYPIASGPAESAITESYVASEGSIQETSIQALLNQGLVGSSSVMRK 194
           L+ +SVD A  E AG+P A  P  +     Y++S       S  A  N+ + G +   R 
Sbjct: 272 LINESVDEADMENAGHPSADTPTATNYFLQYISSSLENSTNSADASSNKFVFGQNMSER- 330

Query: 193 QNTSVLSNMGLSEVSS 146
               VLS   L+EVSS
Sbjct: 331 ----VLSPPKLNEVSS 342

>PAIR1_ORYSA (Q75RY2) Protein PAIR1 (HOMOLOGOUS PAIRING ABERRATION IN RICE|
           MEIOSIS 1 protein)
          Length = 492

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
 Frame = -2

Query: 358 VDAAQSELAGYPIASGPAESAITESYVASEGSIQETSIQALLN-----QGLVGSSSVMRK 194
           VD+ QS++    +     E+++    +  + ++ E+S+Q +L      + L GSS+    
Sbjct: 166 VDSVQSDVM--QLNRAMKEASLDSGSIRQKIAVLESSLQQILKGQDDLKALFGSSTKHNP 223

Query: 193 QNTSVLSNMG--LSEVSSAL 140
             TSVL+++G  L+E+SS L
Sbjct: 224 DQTSVLNSLGSKLNEISSTL 243

>FEN_PYRFU (O93634) Flap structure-specific endonuclease (EC 3.1.-.-)|
          Length = 340

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -2

Query: 424 RGEWEKAARGHPNRPKVLLLKSVDAAQS-ELAGYPIASGPAESAITESYVASEGSIQETS 248
           +GE E+A +      +V  +   DA +  EL G PI   P+E     +Y+A++GS+  ++
Sbjct: 111 KGEIEEARKYAQRATRVNEMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAKGSVYASA 170

Query: 247 IQ 242
            Q
Sbjct: 171 SQ 172

>RS1_MYCLE (P46836) 30S ribosomal protein S1|
          Length = 481

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 23/74 (31%), Positives = 35/74 (47%)
 Frame = -2

Query: 430 TTRGEWEKAARGHPNRPKVLLLKSVDAAQSELAGYPIASGPAESAITESYVASEGSIQET 251
           T R EWE        R K+  ++    A +E AG+  +  P  S+ T S  A+ GS+   
Sbjct: 409 TQRAEWEARYAEAERRYKMHTIQMEKFAATEEAGHGSSEQPPASS-TPSAKATGGSLASD 467

Query: 250 SIQALLNQGLVGSS 209
           +  A L + L GS+
Sbjct: 468 AQLAALREKLAGSA 481

>FEN_PYRHO (O50123) Flap structure-specific endonuclease (EC 3.1.-.-)|
          Length = 343

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -2

Query: 424 RGEWEKAARGHPNRPKVLLLKSVDAAQS-ELAGYPIASGPAESAITESYVASEGSIQETS 248
           +G  E+A +      KV  +   DA +  +L G PI   P+E     +Y+AS+G +  ++
Sbjct: 111 KGNLEEARKYAQRATKVNEMLIEDAKKLLQLMGIPIIQAPSEGEAQAAYMASKGDVYASA 170

Query: 247 IQ 242
            Q
Sbjct: 171 SQ 172

>SOP2_CAEEL (Q965H3) Polycomb protein sop-2 (Suppressor of pal-1 protein 2)|
          Length = 735

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
 Frame = -2

Query: 433 PTTRGEWEKAARGHPNRPKVLLLKSVDAAQSELAGYPIA-SGPAESAITESYVASEGSIQ 257
           P  RG +  AARG P+R       + + A       P+A + PA  A  E+  A+E  + 
Sbjct: 237 PGYRGAFRGAARGAPSRRPA---PAAEVAPETPVAAPMAPAAPAAPATPEAAPAAE--VM 291

Query: 256 ETSIQALLNQGLVGSSSVMRKQNTSVLSNMGLSEVSSALR 137
           +TSI   + Q      S +   N S  + M  S+   A R
Sbjct: 292 DTSIATEMPQ-----ESAVDLSNVSAATEMDTSKEGEASR 326

>SYFB_PSEPF (Q3KEX7) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 792

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 78  RAYSPSSLPARYPSSRSPNHLKAEETSESPIL 173
           R Y  + LP RYP +R     KAE  S+ P L
Sbjct: 467 RLYGYNRLPVRYPQARLAPQAKAEARSDLPEL 498


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,692,476
Number of Sequences: 219361
Number of extensions: 1193350
Number of successful extensions: 3275
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3275
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)