Clone Information

BLAST Search Result

Clone Name	rbastl01a08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_476056.1\| Oryza sativa (japonica cultivar-group), predic...	113	5e-22
2	gb\|AC087553.3\| Oryza sativa (japonica cultivar-group) chromosome...	113	5e-22
3	gb\|AC084817.5\| Oryza sativa (japonica cultivar-group) chromosome...	113	5e-22
4	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	113	5e-22
5	emb\|AL008732.1\|HS67M12 Human DNA sequence from clone RP1-67M12 o...	42	1.4
6	gb\|AC098613.2\| Homo sapiens chromosome 3 clone RP11-24F11, compl...	42	1.4
7	gb\|AC093333.7\| Homo sapiens chromosome 8, clone RP11-470N15, com...	42	1.4
8	gb\|AC104304.2\| Homo sapiens chromosome 3 clone RP11-509I21, comp...	42	1.4
9	gb\|AC162801.2\| Mus musculus BAC clone RP24-65E6 from chromosome ...	42	1.4
10	gb\|AC156798.2\| Mus musculus BAC clone RP23-378B3 from chromosome...	42	1.4
11	gb\|AC025522.7\| Homo sapiens chromosome 8, clone RP11-599P7, comp...	42	1.4
12	gb\|AF508798.1\| Homo sapiens lactoferrin gene, exons 1 through 6 ...	42	1.4
13	ref\|NM_101556.3\| Arabidopsis thaliana unknown protein AT1G16950 ...	40	5.4
14	ref\|XM_522330.1\| PREDICTED: Pan troglodytes similar to potassium...	40	5.4
15	gb\|AC150752.4\| Bos taurus BAC CH240-288E20 (Children's Hospital...	40	5.4
16	gb\|AE016853.1\| Pseudomonas syringae pv. tomato str. DC3000 compl...	40	5.4
17	gb\|CP000075.1\| Pseudomonas syringae pv. syringae B728a, complete...	40	5.4
18	gb\|CP000058.1\| Pseudomonas syringae pv. phaseolicola 1448A, comp...	40	5.4
19	gb\|AC124412.3\| Mus musculus BAC clone RP24-274J3 from chromosome...	40	5.4
20	gb\|AC118613.8\| Mus musculus chromosome 6, clone RP23-442E2, comp...	40	5.4
21	ref\|NM_002234.2\| Homo sapiens potassium voltage-gated channel, s...	40	5.4
22	emb\|AL606489.26\| Human DNA sequence from clone RP11-739N20 on ch...	40	5.4
23	emb\|AL161742.7\| Human DNA sequence from clone RP4-597J3 on chrom...	40	5.4
24	gb\|AC090786.6\| Homo sapiens chromosome 8, clone RP11-381G11, com...	40	5.4
25	emb\|BX927155.1\| Corynebacterium glutamicum ATCC 13032, IS finger...	40	5.4
26	emb\|AL513014.9\| Mouse DNA sequence from clone RP23-461O24 on chr...	40	5.4
27	gb\|BC099666.1\| Homo sapiens potassium voltage-gated channel, sha...	40	5.4
28	gb\|BC099665.1\| Homo sapiens potassium voltage-gated channel, sha...	40	5.4
29	gb\|BC096358.1\| Homo sapiens potassium voltage-gated channel, sha...	40	5.4
30	gb\|BC096357.1\| Homo sapiens potassium voltage-gated channel, sha...	40	5.4
31	gb\|AC023741.4\| Drosophila melanogaster X BAC RP98-23O9 (Roswell ...	40	5.4
32	gb\|AC104627.8\| Drosophila melanogaster X BAC RP98-4A11 (Roswell ...	40	5.4
33	dbj\|AP001204.1\| Rhodococcus equi plasmid pREAT701 DNA, complete ...	40	5.4
34	gb\|AC112640.3\| Homo sapiens 3 BAC RP11-817M15 (Roswell Park Canc...	40	5.4
35	dbj\|AK134538.1\| Mus musculus adult male medulla oblongata cDNA, ...	40	5.4
36	gb\|AC005906.1\| Homo sapiens 12p13.3 BAC RPCI11-429A20 (Roswell P...	40	5.4
37	gb\|AC093926.6\| Genomic sequence for Mus musculus, clone RP23-342...	40	5.4
38	dbj\|AK163880.1\| Mus musculus 0 day neonate cerebellum cDNA, RIKE...	40	5.4
39	gb\|AC161147.6\| Mus musculus BAC clone RP23-357G12 from chromosom...	40	5.4
40	dbj\|AK039271.1\| Mus musculus adult male spinal cord cDNA, RIKEN ...	40	5.4
41	dbj\|AK031928.1\| Mus musculus adult male medulla oblongata cDNA, ...	40	5.4
42	dbj\|AK076827.1\| Mus musculus adult male testis cDNA, RIKEN full-...	40	5.4
43	gb\|AC022872.4\|AC022872 Homo sapiens chromosome 15, clone RP11-39...	40	5.4
44	gb\|AC079412.5\| Homo sapiens chromosome 16 clone CTD-2302M15, com...	40	5.4
45	gb\|AF116907.2\|AF116907 Rhodococcus equi virulence plasmid, compl...	40	5.4
46	dbj\|BA000036.3\| Corynebacterium glutamicum ATCC 13032 DNA, compl...	40	5.4
47	gb\|AC048380.12\| Homo sapiens chromosome 18, clone RP11-426J5, co...	40	5.4
48	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	5.4
49	gb\|AC026237.4\|AC026237 Arabidopsis thaliana chromosome I BAC F17...	40	5.4
50	gb\|AC051629.3\|AC051629 Arabidopsis thaliana chromosome I BAC F6I...	40	5.4
51	gb\|AE003490.3\| Drosophila melanogaster chromosome X, section 42 ...	40	5.4
52	dbj\|AK122269.1\| Mus musculus mRNA for mKIAA0386 protein	40	5.4
53	gb\|AE016825.1\| Chromobacterium violaceum ATCC 12472, complete ge...	40	5.4
54	gb\|AF017435.1\|AF017435 Methylobacterium extorquens methanol oxid...	40	5.4
55	gb\|M60451.1\|HUMVENHK2 Human voltage-gated potassium channel (HK2...	40	5.4
56	gb\|M83254.1\|HUMPOTCH Human cardiac potassium channel (KCNA5) mRN...	40	5.4
57	gb\|M55513.1\|HUMPCA Human potassium channel (HPCN1) mRNA, complet...	40	5.4

>ref|XM_476056.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3354

 Score =  113 bits (57), Expect = 5e-22
 Identities = 78/85 (91%)
 Strand = Plus / Minus

                                                                        
Query: 320  ccctccagttgctccacatcctgagcattatgtacagcagagccatgcacacagtggccg 379
            |||||||||||||||||||||||||||||||||||||||| || | |||||| | |||||
Sbjct: 3112 ccctccagttgctccacatcctgagcattatgtacagcagcgcgacgcacaccgcggccg 3053

                                     
Query: 380  agacgatggcgatggccgccacgat 404
            | |||| ||||||||||||||||||
Sbjct: 3052 acacgacggcgatggccgccacgat 3028



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 229  accttccagtacttcccgtccccggcgcagcacttgcc 266
            |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 3212 accttccagtacttgccgtcgccggcgcaccacttgcc 3175



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 174  cgacgccgagctgtacttctc 194
            |||||||||||||||||||||
Sbjct: 3267 cgacgccgagctgtacttctc 3247

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>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10,
             complete sequence
          Length = 156772

 Score =  113 bits (57), Expect = 5e-22
 Identities = 78/85 (91%)
 Strand = Plus / Minus

                                                                         
Query: 320   ccctccagttgctccacatcctgagcattatgtacagcagagccatgcacacagtggccg 379
             |||||||||||||||||||||||||||||||||||||||| || | |||||| | |||||
Sbjct: 43712 ccctccagttgctccacatcctgagcattatgtacagcagcgcgacgcacaccgcggccg 43653

                                      
Query: 380   agacgatggcgatggccgccacgat 404
             | |||| ||||||||||||||||||
Sbjct: 43652 acacgacggcgatggccgccacgat 43628



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                   
Query: 229   accttccagtacttcccgtccccggcgcagcacttgcc 266
             |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 43812 accttccagtacttgccgtcgccggcgcaccacttgcc 43775



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   cgacgccgagctgtacttctc 194
             |||||||||||||||||||||
Sbjct: 43867 cgacgccgagctgtacttctc 43847

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>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04,
              complete sequence
          Length = 136713

 Score =  113 bits (57), Expect = 5e-22
 Identities = 78/85 (91%)
 Strand = Plus / Minus

                                                                          
Query: 320    ccctccagttgctccacatcctgagcattatgtacagcagagccatgcacacagtggccg 379
              |||||||||||||||||||||||||||||||||||||||| || | |||||| | |||||
Sbjct: 131927 ccctccagttgctccacatcctgagcattatgtacagcagcgcgacgcacaccgcggccg 131868

                                       
Query: 380    agacgatggcgatggccgccacgat 404
              | |||| ||||||||||||||||||
Sbjct: 131867 acacgacggcgatggccgccacgat 131843



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                    
Query: 229    accttccagtacttcccgtccccggcgcagcacttgcc 266
              |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 132027 accttccagtacttgccgtcgccggcgcaccacttgcc 131990



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 174    cgacgccgagctgtacttctc 194
              |||||||||||||||||||||
Sbjct: 132082 cgacgccgagctgtacttctc 132062

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  113 bits (57), Expect = 5e-22
 Identities = 78/85 (91%)
 Strand = Plus / Minus

                                                                           
Query: 320     ccctccagttgctccacatcctgagcattatgtacagcagagccatgcacacagtggccg 379
               |||||||||||||||||||||||||||||||||||||||| || | |||||| | |||||
Sbjct: 4157233 ccctccagttgctccacatcctgagcattatgtacagcagcgcgacgcacaccgcggccg 4157174

                                        
Query: 380     agacgatggcgatggccgccacgat 404
               | |||| ||||||||||||||||||
Sbjct: 4157173 acacgacggcgatggccgccacgat 4157149



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                     
Query: 229     accttccagtacttcccgtccccggcgcagcacttgcc 266
               |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 4157333 accttccagtacttgccgtcgccggcgcaccacttgcc 4157296



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 174     cgacgccgagctgtacttctc 194
               |||||||||||||||||||||
Sbjct: 4157388 cgacgccgagctgtacttctc 4157368

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>emb|AL008732.1|HS67M12 Human DNA sequence from clone RP1-67M12 on chromosome 6p22.1-22.3
             Contains part of a novel gene, complete sequence
          Length = 103268

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 323   tccagttgctccacatcctga 343
             |||||||||||||||||||||
Sbjct: 53759 tccagttgctccacatcctga 53779

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>gb|AC098613.2| Homo sapiens chromosome 3 clone RP11-24F11, complete sequence
          Length = 185437

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 57     acagccacccatacacaaaca 77
              |||||||||||||||||||||
Sbjct: 125559 acagccacccatacacaaaca 125539

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>gb|AC093333.7| Homo sapiens chromosome 8, clone RP11-470N15, complete sequence
          Length = 187680

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 323    tccagttgctccacatcctga 343
              |||||||||||||||||||||
Sbjct: 145465 tccagttgctccacatcctga 145445

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>gb|AC104304.2| Homo sapiens chromosome 3 clone RP11-509I21, complete sequence
          Length = 202933

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 57   acagccacccatacacaaaca 77
            |||||||||||||||||||||
Sbjct: 1416 acagccacccatacacaaaca 1396

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>gb|AC162801.2| Mus musculus BAC clone RP24-65E6 from chromosome 12, complete sequence
          Length = 225198

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 62    cacccatacacaaacattttt 82
             |||||||||||||||||||||
Sbjct: 13462 cacccatacacaaacattttt 13442

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>gb|AC156798.2| Mus musculus BAC clone RP23-378B3 from chromosome 12, complete sequence
          Length = 220547

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 62    cacccatacacaaacattttt 82
             |||||||||||||||||||||
Sbjct: 16245 cacccatacacaaacattttt 16265

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>gb|AC025522.7| Homo sapiens chromosome 8, clone RP11-599P7, complete sequence
          Length = 173270

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 323    tccagttgctccacatcctga 343
              |||||||||||||||||||||
Sbjct: 124938 tccagttgctccacatcctga 124958

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>gb|AF508798.1| Homo sapiens lactoferrin gene, exons 1 through 6 and partial cds
          Length = 19899

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 57   acagccacccatacacaaaca 77
            |||||||||||||||||||||
Sbjct: 5171 acagccacccatacacaaaca 5191

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>ref|NM_101556.3| Arabidopsis thaliana unknown protein AT1G16950 mRNA, complete cds
          Length = 551

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 66  catacacaaacatttttgagaaga 89
           |||||||||||||| |||||||||
Sbjct: 469 catacacaaacattcttgagaaga 446

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>ref|XM_522330.1| PREDICTED: Pan troglodytes similar to potassium voltage-gated
           channel, shaker-related subfamily, member 5; potassium
           channel protein; voltage-gated potassium channel;
           cardiac potassium channel; potassium channel 1;
           insulinoma and islet potassium channel; voltage-gated
           potass... (LOC466930), mRNA
          Length = 1809

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 377 ccgagacgatggcgatggcc 396
           ||||||||||||||||||||
Sbjct: 736 ccgagacgatggcgatggcc 717

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>gb|AC150752.4| Bos taurus  BAC CH240-288E20 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 165924

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 323    tccagttgctccacatcctgagca 346
              ||||||||||||||||||| ||||
Sbjct: 132094 tccagttgctccacatcctcagca 132071

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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 176     acgccgagctgtacttctcc 195
               ||||||||||||||||||||
Sbjct: 1697490 acgccgagctgtacttctcc 1697509

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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 176     acgccgagctgtacttctcc 195
               ||||||||||||||||||||
Sbjct: 1527150 acgccgagctgtacttctcc 1527169

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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 176     acgccgagctgtacttctcc 195
               ||||||||||||||||||||
Sbjct: 4391754 acgccgagctgtacttctcc 4391735

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>gb|AC124412.3| Mus musculus BAC clone RP24-274J3 from chromosome 9, complete sequence
          Length = 175945

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     tttttgagaagaaaccacag 97
              ||||||||||||||||||||
Sbjct: 168367 tttttgagaagaaaccacag 168386

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>gb|AC118613.8| Mus musculus chromosome 6, clone RP23-442E2, complete sequence
          Length = 256556

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      gagaaacgagaacaaaaggc 21
              ||||||||||||||||||||
Sbjct: 111410 gagaaacgagaacaaaaggc 111429

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>ref|NM_002234.2| Homo sapiens potassium voltage-gated channel, shaker-related
           subfamily, member 5 (KCNA5), mRNA
          Length = 2865

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 377 ccgagacgatggcgatggcc 396
           ||||||||||||||||||||
Sbjct: 998 ccgagacgatggcgatggcc 979

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>emb|AL606489.26| Human DNA sequence from clone RP11-739N20 on chromosome 1 Contains the
             5' end of the gene for phosphoinositol 3-phosphate-binding
             protein-3 (PEPP3), two novel genes, the  PPP1R15B gene for
             protein phosphatase 1, regulatory (inhibitor) subunit 15B,
             the PIK3C2B gene for phosphoinositide-3-kinase, class 2,
             beta polypeptide, a small nuclear ribonucleoprotein
             polypeptide F (SNRPF) pseudogene and three CpG islands,
             complete sequence
          Length = 167079

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   ctccagttgctccacatcct 341
             ||||||||||||||||||||
Sbjct: 47636 ctccagttgctccacatcct 47617

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>emb|AL161742.7| Human DNA sequence from clone RP4-597J3 on chromosome 1p32.1-32.3
             Contains the 5' end of the ROR1 gene for receptor tyrosine
             kinase-like orphan receptor 1, a ribosomal protein L19
             (RPL19) pseudogene, a cofilin 1 (non-muscle) (CFL1)
             pseudogene and a CpG island, complete sequence
          Length = 114409

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   tccagttgctccacatcctg 342
             ||||||||||||||||||||
Sbjct: 19295 tccagttgctccacatcctg 19314

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>gb|AC090786.6| Homo sapiens chromosome 8, clone RP11-381G11, complete sequence
          Length = 188274

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 322    ctccagttgctccacatcct 341
              ||||||||||||||||||||
Sbjct: 180689 ctccagttgctccacatcct 180670

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>emb|BX927155.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 8/10
          Length = 349136

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    cttccagtacttcccgtccc 250
              ||||||||||||||||||||
Sbjct: 133877 cttccagtacttcccgtccc 133858

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>emb|AL513014.9| Mouse DNA sequence from clone RP23-461O24 on chromosome 13 Contains the
             5' end of the gene for a novel protein similar to C6orf32
             (KIAA0386, DIFF48), complete sequence
          Length = 80460

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 272   tgccgtgcacctccggctcc 291
             ||||||||||||||||||||
Sbjct: 11955 tgccgtgcacctccggctcc 11936

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>gb|BC099666.1| Homo sapiens potassium voltage-gated channel, shaker-related
           subfamily, member 5, mRNA (cDNA clone MGC:117059
           IMAGE:40010236), complete cds
          Length = 2086

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 377 ccgagacgatggcgatggcc 396
           ||||||||||||||||||||
Sbjct: 959 ccgagacgatggcgatggcc 940

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>gb|BC099665.1| Homo sapiens potassium voltage-gated channel, shaker-related
           subfamily, member 5, mRNA (cDNA clone MGC:117058
           IMAGE:40010234), complete cds
          Length = 2086

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 377 ccgagacgatggcgatggcc 396
           ||||||||||||||||||||
Sbjct: 959 ccgagacgatggcgatggcc 940

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>gb|BC096358.1| Homo sapiens potassium voltage-gated channel, shaker-related
           subfamily, member 5, mRNA (cDNA clone MGC:117061
           IMAGE:40010240), complete cds
          Length = 2086

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 377 ccgagacgatggcgatggcc 396
           ||||||||||||||||||||
Sbjct: 959 ccgagacgatggcgatggcc 940

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>gb|BC096357.1| Homo sapiens potassium voltage-gated channel, shaker-related
           subfamily, member 5, mRNA (cDNA clone MGC:117060
           IMAGE:40010237), complete cds
          Length = 2086

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 377 ccgagacgatggcgatggcc 396
           ||||||||||||||||||||
Sbjct: 959 ccgagacgatggcgatggcc 940

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>gb|AC023741.4| Drosophila melanogaster X BAC RP98-23O9 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 160440

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     agagaaacgagaacaaaagg 20
             ||||||||||||||||||||
Sbjct: 77325 agagaaacgagaacaaaagg 77344

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>gb|AC104627.8| Drosophila melanogaster X BAC RP98-4A11 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 187921

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     agagaaacgagaacaaaagg 20
             ||||||||||||||||||||
Sbjct: 12519 agagaaacgagaacaaaagg 12538

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>dbj|AP001204.1| Rhodococcus equi plasmid pREAT701 DNA, complete sequence
          Length = 80610

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   acgctgctctccgacgccga 182
             ||||||||||||||||||||
Sbjct: 54339 acgctgctctccgacgccga 54320

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>gb|AC112640.3| Homo sapiens 3 BAC RP11-817M15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 211335

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 323    tccagttgctccacatcctg 342
              ||||||||||||||||||||
Sbjct: 205754 tccagttgctccacatcctg 205773

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>dbj|AK134538.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
           enriched library, clone:6330405L09 product:neurotrophic
           tyrosine kinase, receptor, type 2, full insert sequence
          Length = 5528

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 272 tgccgtgcacctccggctcc 291
           ||||||||||||||||||||
Sbjct: 138 tgccgtgcacctccggctcc 119

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>gb|AC005906.1| Homo sapiens 12p13.3 BAC RPCI11-429A20 (Roswell Park Cancer Institute
              Human BAC Library) complete sequence
          Length = 185952

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 377    ccgagacgatggcgatggcc 396
              ||||||||||||||||||||
Sbjct: 108433 ccgagacgatggcgatggcc 108452

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>gb|AC093926.6| Genomic sequence for Mus musculus, clone RP23-342N3, complete sequence
          Length = 210913

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    tttttgagaagaaaccacag 97
             ||||||||||||||||||||
Sbjct: 59070 tttttgagaagaaaccacag 59089

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>dbj|AK163880.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:C230006N14 product:Diff48
           protein homolog [Homo sapiens], full insert sequence
          Length = 1351

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 272 tgccgtgcacctccggctcc 291
           ||||||||||||||||||||
Sbjct: 143 tgccgtgcacctccggctcc 124

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>gb|AC161147.6| Mus musculus BAC clone RP23-357G12 from chromosome 6, complete sequence
          Length = 225957

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     gagaaacgagaacaaaaggc 21
             ||||||||||||||||||||
Sbjct: 37175 gagaaacgagaacaaaaggc 37156

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>dbj|AK039271.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length
           enriched library, clone:A330012A19 product:hypothetical
           protein, full insert sequence
          Length = 2550

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 272 tgccgtgcacctccggctcc 291
           ||||||||||||||||||||
Sbjct: 172 tgccgtgcacctccggctcc 153

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>dbj|AK031928.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
           enriched library, clone:6330500D04 product:DJ245M18.1
           (PLACENTAL PROTEIN DIFF40) (FRAGMENT) homolog [Homo
           sapiens], full insert sequence
          Length = 3370

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 272 tgccgtgcacctccggctcc 291
           ||||||||||||||||||||
Sbjct: 160 tgccgtgcacctccggctcc 141

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>dbj|AK076827.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930502C15 product:homeodomain
           interacting protein kinase 2, full insert sequence
          Length = 875

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 2   gagaaacgagaacaaaaggc 21
           ||||||||||||||||||||
Sbjct: 106 gagaaacgagaacaaaaggc 125

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>gb|AC022872.4|AC022872 Homo sapiens chromosome 15, clone RP11-390D11, complete sequence
          Length = 181923

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 322    ctccagttgctccacatcct 341
              ||||||||||||||||||||
Sbjct: 118417 ctccagttgctccacatcct 118398

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>gb|AC079412.5| Homo sapiens chromosome 16 clone CTD-2302M15, complete sequence
          Length = 104704

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   tccagttgctccacatcctg 342
             ||||||||||||||||||||
Sbjct: 42939 tccagttgctccacatcctg 42958

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>gb|AF116907.2|AF116907 Rhodococcus equi virulence plasmid, complete sequence
          Length = 80609

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   acgctgctctccgacgccga 182
             ||||||||||||||||||||
Sbjct: 54338 acgctgctctccgacgccga 54319

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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 231     cttccagtacttcccgtccc 250
               ||||||||||||||||||||
Sbjct: 2606703 cttccagtacttcccgtccc 2606684

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>gb|AC048380.12| Homo sapiens chromosome 18, clone RP11-426J5, complete sequence
          Length = 224670

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   ctccagttgctccacatcct 341
             ||||||||||||||||||||
Sbjct: 79449 ctccagttgctccacatcct 79430

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 176     acgccgagctgtacttctcc 195
               ||||||||||||||||||||
Sbjct: 4111372 acgccgagctgtacttctcc 4111353

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>gb|AC026237.4|AC026237 Arabidopsis thaliana chromosome I BAC F17F16 genomic sequence,
            complete sequence
          Length = 90498

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 66   catacacaaacatttttgagaaga 89
            |||||||||||||| |||||||||
Sbjct: 4459 catacacaaacattcttgagaaga 4482

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>gb|AC051629.3|AC051629 Arabidopsis thaliana chromosome I BAC F6I1 genomic sequence, complete
             sequence
          Length = 93677

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 66    catacacaaacatttttgagaaga 89
             |||||||||||||| |||||||||
Sbjct: 51156 catacacaaacattcttgagaaga 51179

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>gb|AE003490.3| Drosophila melanogaster chromosome X, section 42 of 74 of the complete
             sequence
          Length = 302665

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     agagaaacgagaacaaaagg 20
             ||||||||||||||||||||
Sbjct: 94446 agagaaacgagaacaaaagg 94465

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>dbj|AK122269.1| Mus musculus mRNA for mKIAA0386 protein
          Length = 5528

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 272 tgccgtgcacctccggctcc 291
           ||||||||||||||||||||
Sbjct: 139 tgccgtgcacctccggctcc 120

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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 278     gcacctccggctcctcgccgtccg 301
               |||||||| |||||||||||||||
Sbjct: 1474348 gcacctccagctcctcgccgtccg 1474371

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>gb|AF017435.1|AF017435 Methylobacterium extorquens methanol oxidation genes, glmU-like gene,
            partial cds, and orfL2, orfL1, orfR genes, complete cds
          Length = 4301

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 273  gccgtgcacctccggctcct 292
            ||||||||||||||||||||
Sbjct: 2197 gccgtgcacctccggctcct 2216

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>gb|M60451.1|HUMVENHK2 Human voltage-gated potassium channel (HK2) mRNA, complete cds
          Length = 2118

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 377 ccgagacgatggcgatggcc 396
           ||||||||||||||||||||
Sbjct: 945 ccgagacgatggcgatggcc 926

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>gb|M83254.1|HUMPOTCH Human cardiac potassium channel (KCNA5) mRNA, complete cds
          Length = 2755

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 377 ccgagacgatggcgatggcc 396
           ||||||||||||||||||||
Sbjct: 925 ccgagacgatggcgatggcc 906

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>gb|M55513.1|HUMPCA Human potassium channel (HPCN1) mRNA, complete cds
          Length = 2867

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 377 ccgagacgatggcgatggcc 396
           ||||||||||||||||||||
Sbjct: 997 ccgagacgatggcgatggcc 978


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,212,778
Number of Sequences: 3902068
Number of extensions: 3212778
Number of successful extensions: 70817
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70428
Number of HSP's gapped (non-prelim): 389
length of query: 404
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 382
effective length of database: 17,147,199,772
effective search space: 6550230312904
effective search space used: 6550230312904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result