ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl01a05 |
|---|---|
| Clone Library Name | barley_pub |
>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 49.3 bits (116), Expect = 4e-06 Identities = 25/61 (40%), Positives = 37/61 (60%) Frame = -2 Query: 430 VISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGISGPKEVAMKLAVRSD 251 +I+ LGMQPCE +D V N SH+ L+G+F G +LVR ++ V M++ VRS Sbjct: 801 IITFLGMQPCERSDKVPENKNSHSLYLAGIFRGGYDLLVRSRLALA--DGVTMQVTVRSK 858 Query: 250 D 248 + Sbjct: 859 E 859
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 48.9 bits (115), Expect = 5e-06 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Frame = -2 Query: 430 VISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGIS-GPKEVAMKLAVRS 254 + ILG+ PCE +D V HT LSGVF G VL + + + +AM + ++S Sbjct: 797 ISEILGLVPCERSDRVPEGKTQHTVFLSGVFRGGYDVLSKATVAVDPNDNSIAMNIIIKS 856 Query: 253 DDPEVSDRI 227 ++P V+D + Sbjct: 857 NEPLVADLV 865
>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 48.5 bits (114), Expect = 7e-06 Identities = 25/61 (40%), Positives = 37/61 (60%) Frame = -2 Query: 430 VISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGISGPKEVAMKLAVRSD 251 +I+ LGMQPCE +D V N SH+ L+GV+ G +LVR ++ V M++ VRS Sbjct: 801 IITFLGMQPCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRLALA--DGVTMQVTVRSK 858 Query: 250 D 248 + Sbjct: 859 E 859
>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 46.2 bits (108), Expect = 3e-05 Identities = 20/40 (50%), Positives = 27/40 (67%) Frame = -2 Query: 430 VISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVR 311 ++ LGM PCE +D V +N +HT LL+GVF G +LVR Sbjct: 804 IVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVR 843
>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 46.2 bits (108), Expect = 3e-05 Identities = 20/40 (50%), Positives = 27/40 (67%) Frame = -2 Query: 430 VISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVR 311 ++ LGM PCE +D V +N +HT LL+GVF G +LVR Sbjct: 804 IVKFLGMHPCERSDKVPDNKNTHTLLLAGVFRGGHDILVR 843
>YDAM_ECOLI (P77302) Hypothetical protein ydaM| Length = 430 Score = 31.2 bits (69), Expect = 1.1 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -1 Query: 431 CYKHPWHAALRGNRCCPKQFEIAHLP 354 C KH W + G R P EI+HLP Sbjct: 192 CQKHTWEINMLGRRVMPIMHEISHLP 217
>YDAM_ECO57 (Q8X8Q3) Hypothetical protein ydaM| Length = 430 Score = 31.2 bits (69), Expect = 1.1 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -1 Query: 431 CYKHPWHAALRGNRCCPKQFEIAHLP 354 C KH W + G R P EI+HLP Sbjct: 192 CQKHTWEINMLGRRVMPIMHEISHLP 217
>NUGC_WHEAT (Q95H60) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.9 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -2 Query: 346 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 239 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACOF (Q6ENW0) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.9 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -2 Query: 346 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 239 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACHY (Q6L396) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.9 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -2 Query: 346 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 239 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYSA (P12200) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.9 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -2 Query: 346 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 239 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYNI (Q6ENH1) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.9 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -2 Query: 346 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 239 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_MAIZE (P19124) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 30.4 bits (67), Expect = 1.9 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = -2 Query: 346 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 239 G + +V L R+ +GI P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>SLS1_YEAST (P42900) Sigma-like sequence protein 1, mitochondrial precursor| (Protein SLS1) Length = 643 Score = 29.6 bits (65), Expect = 3.3 Identities = 19/44 (43%), Positives = 26/44 (59%) Frame = +3 Query: 207 PFATISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPM 338 P +IS LS+T G S +ASF ++ F PLI ++K LPM Sbjct: 386 PSDSISQSLSITLGHSLQSASF-SSIFQPLIHKSFISKLLNLPM 428
>NUGC_SOYBN (P31174) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 158 Score = 29.3 bits (64), Expect = 4.3 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -2 Query: 346 GVFIGNVKVLVRLSFGISGPKEVAMKLAVRSDDPEV 239 G + +V L RL +GI P+EV +K+ V +P + Sbjct: 62 GGLLASVYHLTRLEYGIDQPEEVCIKIFVARKNPRI 97
>REXO3_YARLI (Q6CFE7) RNA exonuclease 3 (EC 3.1.-.-)| Length = 757 Score = 29.3 bits (64), Expect = 4.3 Identities = 19/57 (33%), Positives = 28/57 (49%) Frame = +3 Query: 207 PFATISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPMNTPESRQVCDLEL 377 PF T+S SL + +S T++ TS P+ TKT + P +TP L+L Sbjct: 466 PFRTVSTSESLDTSTSTSTSTSATTS----APSAKSTKTASRPASTPTKSLTSSLDL 518
>COPG_SCHPO (P87140) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 905 Score = 28.9 bits (63), Expect = 5.7 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Frame = -2 Query: 430 VISILGMQPCEGTDVVQNNSRSHTCLLSGVFIGNVKVLVRLSFGISGPKE-VAMKLAVRS 254 V +L MQP EGT+ + H LSG + KVL + S E + +K+ R Sbjct: 833 VAELLQMQPLEGTE-NPTDKPVHVMKLSGKLVNGEKVLALVKMAHSKDGEGITIKVIARG 891 Query: 253 DDPEVSDRIHEIVANG 206 + SD E+V G Sbjct: 892 E----SDSSVELVVGG 903
>RPOB_EUGGR (P23579) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1082 Score = 28.5 bits (62), Expect = 7.4 Identities = 17/52 (32%), Positives = 26/52 (50%) Frame = +3 Query: 219 ISWILSLTSGSSDLTASFMATSFGPLIPNDSLTKTFTLPMNTPESRQVCDLE 374 +S +L T+ S+LT + FGP N TK +NT + +VC +E Sbjct: 365 LSQLLDDTNSLSELTHKRKLSPFGPNGLNKERTKLDVREINTSQYGRVCPIE 416
>T2R46_PAPHA (Q646G0) Taste receptor type 2 member 46 (T2R46)| Length = 309 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -3 Query: 162 LAFHLVKAQGISINYSIWLCVSWFSRWNPTVVAASFL 52 LAFH V+ + S Y++W+ + FS W T ++ +L Sbjct: 73 LAFHSVEVR--STAYNVWVVTNHFSNWLSTSLSMFYL 107 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,142,445 Number of Sequences: 219361 Number of extensions: 1018306 Number of successful extensions: 2388 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2353 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2388 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
