Clone Name
rbastl01a04
Clone Library Name
barley_pub
No.
Definition
Score (bits)
E Value
1 dbj|AK066310.1| Oryza sativa (japonica cultivar-group) cDNA clon...
84
4e-13
2 ref|XM_474230.1| Oryza sativa (japonica cultivar-group), predic...
82
2e-12
3 emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4,...
82
2e-12
4 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...
82
2e-12
5 gb|AC104283.2| Oryza sativa (japonica cultivar-group) chromosome...
44
0.36
6 gb|AC004745.2| Homo sapiens BAC clone CTA-281B9 from 7, complete...
44
0.36
7 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
44
0.36
8 dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...
44
0.36
9 dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...
44
0.36
10 dbj|AK106538.1| Oryza sativa (japonica cultivar-group) cDNA clon...
44
0.36
11 gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...
44
0.36
12 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
44
0.36
13 emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa...
44
0.36
14 emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb...
44
0.36
15 emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa...
44
0.36
16 gb|AC123032.5| Mus musculus BAC clone RP24-480K24 from chromosom...
42
1.4
17 gb|AC121602.2| Mus musculus BAC clone RP23-309B19 from 10, compl...
42
1.4
18 gb|AC011288.4| Homo sapiens BAC clone RP11-27B1 from 7, complete...
42
1.4
19 gb|AC148449.2| Xenopus tropicalis clone CH216-118D6, complete se...
42
1.4
20 emb|BX255965.12| Zebrafish DNA sequence from clone CH211-270C19,...
42
1.4
21 emb|BX649457.15| Zebrafish DNA sequence from clone DKEYP-87E7 in...
42
1.4
22 gb|AC104516.2| Drosophila melanogaster clone BACR20O17, complete...
40
5.6
23 gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, com...
40
5.6
24 ref|XM_865972.1| PREDICTED: Bos taurus similar to ATP-binding ca...
40
5.6
25 ref|XM_608385.2| PREDICTED: Bos taurus similar to ATP-binding ca...
40
5.6
26 ref|XM_877301.1| PREDICTED: Bos taurus similar to ATP-binding ca...
40
5.6
27 gb|BC072233.1| Xenopus laevis hypothetical protein MGC81517, mRN...
40
5.6
28 gb|AC146417.3| Pan troglodytes BAC clone RP43-29B12 from 7, comp...
40
5.6
29 ref|XM_853575.1| PREDICTED: Canis familiaris similar to ATP-bind...
40
5.6
30 ref|XM_534654.2| PREDICTED: Canis familiaris similar to ATP-bind...
40
5.6
31 ref|XM_844280.1| PREDICTED: Canis familiaris similar to ATP-bind...
40
5.6
32 gb|AC139209.10| Mus musculus chromosome 15, clone RP23-153G2, co...
40
5.6
33 gb|AC110238.10| Mus musculus chromosome 5, clone RP23-106D12, co...
40
5.6
34 gb|AC122161.26| Medicago truncatula clone mth2-11l3, complete se...
40
5.6
35 gb|AC122171.21| Medicago truncatula clone mth2-23b18, complete s...
40
5.6
36 emb|AL445219.14| Human DNA sequence from clone RP11-71L7 on chro...
40
5.6
37 emb|AL390766.16| Human DNA sequence from clone RP13-348N17 on ch...
40
5.6
38 emb|AL359828.13| Human DNA sequence from clone RP5-954P9 on chro...
40
5.6
39 gb|AC161575.3| Mus musculus chromosome 15, clone RP24-264K6, com...
40
5.6
40 emb|BX936403.9| Zebrafish DNA sequence from clone CH211-281A24 i...
40
5.6
41 gb|AC087429.2| Homo sapiens chromosome 3 clone 2063K18 map 3p, c...
40
5.6
42 gb|AC064805.13| Homo sapiens chromosome 17, clone CTD-2006K23, c...
40
5.6
43 ref|XM_627943.1| Cryptosporidium parvum Iowa II hypothetical pro...
40
5.6
44 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
40
5.6
45 gb|AC016888.23| Homo sapiens chromosome 17, clone RP11-452I5, co...
40
5.6
46 dbj|AP003434.2| Oryza sativa (japonica cultivar-group) genomic D...
40
5.6
47 emb|CT010479.25| Mouse DNA sequence from clone RP23-233G23 on ch...
40
5.6
48 gb|AE003510.5| Drosophila melanogaster chromosome X, section 62 ...
40
5.6
49 dbj|AP001889.5| Homo sapiens genomic DNA, chromosome 11 clone:RP...
40
5.6
50 gb|AC087431.3| Homo sapiens chromosome 3 clone RP11-775C23 map 3...
40
5.6
>dbj| AK066310.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J013063E15, full
insert sequence
Length = 3170
Score = 83.8 bits (42), Expect = 4e-13
Identities = 121/146 (82%), Gaps = 6/146 (4%)
Strand = Plus / Minus
Query: 280 catcatatattccacctcttatcagatggattgtgaggaacagcaac-gc-----tgctc 333
|||||||||| ||| ||| ||||||||| |||| ||||||||| ||| || ||||
Sbjct: 2848 catcatatatgccatctcctatcagatgaattgggaggaacaggaacagcaccattgctt 2789
Query: 334 ttcacattttgctgagcctgggaagatgaccgttgcatgcgaggagatgtctcgttttta 393
|||||||| |||||||| ||||| ||||| ||||||||||||||||||| || | |||
Sbjct: 2788 ttcacattctgctgagcttgggatgatgatcgttgcatgcgaggagatgaatcttgctta 2729
Query: 394 ccgtttgtgatgggcaaagaatgcct 419
||||| || ||||||||||| |||||
Sbjct: 2728 ccgttagtcatgggcaaagagtgcct 2703
>ref| XM_474230.1 | Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 2682
Score = 81.8 bits (41), Expect = 2e-12
Identities = 89/105 (84%)
Strand = Plus / Minus
Query: 315 aggaacagcaacgctgctcttcacattttgctgagcctgggaagatgaccgttgcatgcg 374
|||||||||| | |||| |||||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 2643 aggaacagcaccattgcttttcacattctgctgagcttgggatgatgatcgttgcatgcg 2584
Query: 375 aggagatgtctcgtttttaccgtttgtgatgggcaaagaatgcct 419
|||||||| || | |||||||| || ||||||||||| |||||
Sbjct: 2583 aggagatgaatcttgcttaccgttagtcatgggcaaagagtgcct 2539
>emb| AL606999.3 |OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01,
complete sequence
Length = 163448
Score = 81.8 bits (41), Expect = 2e-12
Identities = 89/105 (84%)
Strand = Plus / Minus
Query: 315 aggaacagcaacgctgctcttcacattttgctgagcctgggaagatgaccgttgcatgcg 374
|||||||||| | |||| |||||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 90590 aggaacagcaccattgcttttcacattctgctgagcttgggatgatgatcgttgcatgcg 90531
Query: 375 aggagatgtctcgtttttaccgtttgtgatgggcaaagaatgcct 419
|||||||| || | |||||||| || ||||||||||| |||||
Sbjct: 90530 aggagatgaatcttgcttaccgttagtcatgggcaaagagtgcct 90486
>dbj| AP008210.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 81.8 bits (41), Expect = 2e-12
Identities = 89/105 (84%)
Strand = Plus / Minus
Query: 315 aggaacagcaacgctgctcttcacattttgctgagcctgggaagatgaccgttgcatgcg 374
|||||||||| | |||| |||||||| |||||||| ||||| ||||| |||||||||||
Sbjct: 33878691 aggaacagcaccattgcttttcacattctgctgagcttgggatgatgatcgttgcatgcg 33878632
Query: 375 aggagatgtctcgtttttaccgtttgtgatgggcaaagaatgcct 419
|||||||| || | |||||||| || ||||||||||| |||||
Sbjct: 33878631 aggagatgaatcttgcttaccgttagtcatgggcaaagagtgcct 33878587
>gb| AC104283.2 | Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1607_F09,
complete sequence
Length = 95755
Score = 44.1 bits (22), Expect = 0.36
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 255 ggcacctcgtcgatgtgctgccatcc 280
||||||||||||||||||||| ||||
Sbjct: 29872 ggcacctcgtcgatgtgctgcaatcc 29847
>gb| AC004745.2 | Homo sapiens BAC clone CTA-281B9 from 7, complete sequence
Length = 97137
Score = 44.1 bits (22), Expect = 0.36
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 152 attccaaggaaaaaatattaag 173
||||||||||||||||||||||
Sbjct: 56791 attccaaggaaaaaatattaag 56770
>dbj| AP008218.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
complete sequence
Length = 27566993
Score = 44.1 bits (22), Expect = 0.36
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 aaccaataagatcaaccaacaa 111
||||||||||||||||||||||
Sbjct: 61795 aaccaataagatcaaccaacaa 61816
>dbj| AP008217.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
complete sequence
Length = 28386948
Score = 44.1 bits (22), Expect = 0.36
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 aaccaataagatcaaccaacaa 111
||||||||||||||||||||||
Sbjct: 65746 aaccaataagatcaaccaacaa 65767
>dbj| AP008211.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 44.1 bits (22), Expect = 0.36
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 255 ggcacctcgtcgatgtgctgccatcc 280
||||||||||||||||||||| ||||
Sbjct: 2462850 ggcacctcgtcgatgtgctgcaatcc 2462825
>dbj| AK106538.1 | Oryza sativa (japonica cultivar-group) cDNA clone:002-108-C10, full
insert sequence
Length = 2109
Score = 44.1 bits (22), Expect = 0.36
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 255 ggcacctcgtcgatgtgctgccatcc 280
||||||||||||||||||||| ||||
Sbjct: 1789 ggcacctcgtcgatgtgctgcaatcc 1814
>gb| DP000010.1 | Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 44.1 bits (22), Expect = 0.36
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 aaccaataagatcaaccaacaa 111
||||||||||||||||||||||
Sbjct: 65746 aaccaataagatcaaccaacaa 65767
>gb| DP000011.1 | Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 44.1 bits (22), Expect = 0.36
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 aaccaataagatcaaccaacaa 111
||||||||||||||||||||||
Sbjct: 61795 aaccaataagatcaaccaacaa 61816
>emb| BX072548.4 |CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from
chromosome 11 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 147503
Score = 44.1 bits (22), Expect = 0.36
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 aaccaataagatcaaccaacaa 111
||||||||||||||||||||||
Sbjct: 65746 aaccaataagatcaaccaacaa 65767
>emb| BX000503.2 |CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 131346
Score = 44.1 bits (22), Expect = 0.36
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 aaccaataagatcaaccaacaa 111
||||||||||||||||||||||
Sbjct: 61795 aaccaataagatcaaccaacaa 61816
>emb| BX000496.1 |CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 161808
Score = 44.1 bits (22), Expect = 0.36
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 aaccaataagatcaaccaacaa 111
||||||||||||||||||||||
Sbjct: 13404 aaccaataagatcaaccaacaa 13425
>gb| AC123032.5 | Mus musculus BAC clone RP24-480K24 from chromosome 10, complete
sequence
Length = 162676
Score = 42.1 bits (21), Expect = 1.4
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 94 aataagatcaaccaacaaatgtaca 118
||||||||||||||||||| |||||
Sbjct: 3527 aataagatcaaccaacaaaggtaca 3551
>gb| AC121602.2 | Mus musculus BAC clone RP23-309B19 from 10, complete sequence
Length = 182661
Score = 42.1 bits (21), Expect = 1.4
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 94 aataagatcaaccaacaaatgtaca 118
||||||||||||||||||| |||||
Sbjct: 52926 aataagatcaaccaacaaaggtaca 52902
>gb| AC011288.4 | Homo sapiens BAC clone RP11-27B1 from 7, complete sequence
Length = 159722
Score = 42.1 bits (21), Expect = 1.4
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 235 ttctagatatttgatttgatggcac 259
||||||||||| |||||||||||||
Sbjct: 94586 ttctagatattggatttgatggcac 94610
>gb| AC148449.2 | Xenopus tropicalis clone CH216-118D6, complete sequence
Length = 165682
Score = 42.1 bits (21), Expect = 1.4
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 100 atcaaccaacaaatgtacata 120
|||||||||||||||||||||
Sbjct: 131886 atcaaccaacaaatgtacata 131866
>emb| BX255965.12 | Zebrafish DNA sequence from clone CH211-270C19, complete sequence
Length = 148298
Score = 42.1 bits (21), Expect = 1.4
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 321 agcaacgctgctcttcacatt 341
|||||||||||||||||||||
Sbjct: 4974 agcaacgctgctcttcacatt 4994
>emb| BX649457.15 | Zebrafish DNA sequence from clone DKEYP-87E7 in linkage group 22,
complete sequence
Length = 159207
Score = 42.1 bits (21), Expect = 1.4
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 156 caaggaaaaaatattaagaaa 176
|||||||||||||||||||||
Sbjct: 46798 caaggaaaaaatattaagaaa 46778
>gb| AC104516.2 | Drosophila melanogaster clone BACR20O17, complete sequence
Length = 174404
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 380 atgtctcgtttttaccgttt 399
||||||||||||||||||||
Sbjct: 42647 atgtctcgtttttaccgttt 42628
>gb| AC115722.12 | Mus musculus chromosome 5, clone RP23-16N23, complete sequence
Length = 194380
Score = 40.1 bits (20), Expect = 5.6
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 153 ttccaaggaaaaaatattaagaaa 176
||||||||||||||||| ||||||
Sbjct: 42422 ttccaaggaaaaaatatgaagaaa 42445
>ref| XM_865972.1 | PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B
(MDR/TAP), member 9 isoform 2, transcript variant 3
(LOC529923), mRNA
Length = 2313
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 126 tgaagctgctgctcttctcc 145
||||||||||||||||||||
Sbjct: 296 tgaagctgctgctcttctcc 315
>ref| XM_608385.2 | PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B
(MDR/TAP), member 9 isoform 2, transcript variant 2
(LOC529923), mRNA
Length = 2184
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 126 tgaagctgctgctcttctcc 145
||||||||||||||||||||
Sbjct: 296 tgaagctgctgctcttctcc 315
>ref| XM_877301.1 | PREDICTED: Bos taurus similar to ATP-binding cassette, sub-family B
(MDR/TAP), member 9 isoform 2, transcript variant 4
(LOC529923), mRNA
Length = 2340
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 126 tgaagctgctgctcttctcc 145
||||||||||||||||||||
Sbjct: 296 tgaagctgctgctcttctcc 315
>gb| BC072233.1 | Xenopus laevis hypothetical protein MGC81517, mRNA (cDNA clone
MGC:81517 IMAGE:6637322), complete cds
Length = 3425
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 9 actgctgttgctcgttccaa 28
||||||||||||||||||||
Sbjct: 3043 actgctgttgctcgttccaa 3024
>gb| AC146417.3 | Pan troglodytes BAC clone RP43-29B12 from 7, complete sequence
Length = 196843
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 327 gctgctcttcacattttgct 346
||||||||||||||||||||
Sbjct: 126157 gctgctcttcacattttgct 126138
>ref| XM_853575.1 | PREDICTED: Canis familiaris similar to ATP-binding cassette,
sub-family B (MDR/TAP), member 9 isoform 2, transcript
variant 4 (LOC477456), mRNA
Length = 2505
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 126 tgaagctgctgctcttctcc 145
||||||||||||||||||||
Sbjct: 500 tgaagctgctgctcttctcc 519
>ref| XM_534654.2 | PREDICTED: Canis familiaris similar to ATP-binding cassette,
sub-family B (MDR/TAP), member 9 isoform 2, transcript
variant 1 (LOC477456), mRNA
Length = 2376
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 126 tgaagctgctgctcttctcc 145
||||||||||||||||||||
Sbjct: 500 tgaagctgctgctcttctcc 519
>ref| XM_844280.1 | PREDICTED: Canis familiaris similar to ATP-binding cassette,
sub-family B (MDR/TAP), member 9 isoform 2, transcript
variant 3 (LOC477456), mRNA
Length = 2532
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 126 tgaagctgctgctcttctcc 145
||||||||||||||||||||
Sbjct: 500 tgaagctgctgctcttctcc 519
>gb| AC139209.10 | Mus musculus chromosome 15, clone RP23-153G2, complete sequence
Length = 211178
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 157 aaggaaaaaatattaagaaa 176
||||||||||||||||||||
Sbjct: 22941 aaggaaaaaatattaagaaa 22922
>gb| AC110238.10 | Mus musculus chromosome 5, clone RP23-106D12, complete sequence
Length = 197964
Score = 40.1 bits (20), Expect = 5.6
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 153 ttccaaggaaaaaatattaagaaa 176
||||||||||||||||| ||||||
Sbjct: 11400 ttccaaggaaaaaatatgaagaaa 11377
>gb| AC122161.26 | Medicago truncatula clone mth2-11l3, complete sequence
Length = 118625
Score = 40.1 bits (20), Expect = 5.6
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 150 gtattccaaggaaaaaatattaag 173
|||||||||||||||||| |||||
Sbjct: 27191 gtattccaaggaaaaaattttaag 27214
>gb| AC122171.21 | Medicago truncatula clone mth2-23b18, complete sequence
Length = 125865
Score = 40.1 bits (20), Expect = 5.6
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 150 gtattccaaggaaaaaatattaag 173
|||||||||||||||||| |||||
Sbjct: 90882 gtattccaaggaaaaaattttaag 90859
>emb| AL445219.14 | Human DNA sequence from clone RP11-71L7 on chromosome 13 Contains a
novel gene, complete sequence
Length = 103728
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 146 atcagtattccaaggaaaaa 165
||||||||||||||||||||
Sbjct: 47242 atcagtattccaaggaaaaa 47223
>emb| AL390766.16 | Human DNA sequence from clone RP13-348N17 on chromosome 10 Contains part
of the PARD3 gene for par-3 partitioning defective 3
homolog (C.elegans), complete sequence
Length = 193131
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 327 gctgctcttcacattttgct 346
||||||||||||||||||||
Sbjct: 122764 gctgctcttcacattttgct 122745
>emb| AL359828.13 | Human DNA sequence from clone RP5-954P9 on chromosome 20 Contains the
3' end of the C20orf152 gene and a CpG island, complete
sequence
Length = 38545
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 151 tattccaaggaaaaaatatt 170
||||||||||||||||||||
Sbjct: 8197 tattccaaggaaaaaatatt 8178
>gb| AC161575.3 | Mus musculus chromosome 15, clone RP24-264K6, complete sequence
Length = 164213
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 157 aaggaaaaaatattaagaaa 176
||||||||||||||||||||
Sbjct: 23018 aaggaaaaaatattaagaaa 22999
>emb| BX936403.9 | Zebrafish DNA sequence from clone CH211-281A24 in linkage group 5,
complete sequence
Length = 142908
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 236 tctagatatttgatttgatg 255
||||||||||||||||||||
Sbjct: 119377 tctagatatttgatttgatg 119358
>gb| AC087429.2 | Homo sapiens chromosome 3 clone 2063K18 map 3p, complete sequence
Length = 88688
Score = 40.1 bits (20), Expect = 5.6
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 149 agtattccaaggaaaaaatattaagaaa 176
|||||||||||||||||| ||| |||||
Sbjct: 17332 agtattccaaggaaaaaaaattgagaaa 17305
>gb| AC064805.13 | Homo sapiens chromosome 17, clone CTD-2006K23, complete sequence
Length = 87833
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 125 atgaagctgctgctcttctc 144
||||||||||||||||||||
Sbjct: 84973 atgaagctgctgctcttctc 84954
>ref| XM_627943.1 | Cryptosporidium parvum Iowa II hypothetical protein (cgd1_970),
partial mRNA
Length = 2502
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 153 ttccaaggaaaaaatattaa 172
||||||||||||||||||||
Sbjct: 966 ttccaaggaaaaaatattaa 985
>dbj| AP008207.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 158 aggaaaaaatattaagaaac 177
||||||||||||||||||||
Sbjct: 7050069 aggaaaaaatattaagaaac 7050050
>gb| AC016888.23 | Homo sapiens chromosome 17, clone RP11-452I5, complete sequence
Length = 163597
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 125 atgaagctgctgctcttctc 144
||||||||||||||||||||
Sbjct: 46103 atgaagctgctgctcttctc 46084
>dbj| AP003434.2 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0452F10
Length = 145120
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 158 aggaaaaaatattaagaaac 177
||||||||||||||||||||
Sbjct: 37649 aggaaaaaatattaagaaac 37630
>emb| CT010479.25 | Mouse DNA sequence from clone RP23-233G23 on chromosome 17, complete
sequence
Length = 203311
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 157 aaggaaaaaatattaagaaa 176
||||||||||||||||||||
Sbjct: 142524 aaggaaaaaatattaagaaa 142543
>gb| AE003510.5 | Drosophila melanogaster chromosome X, section 62 of 74 of the complete
sequence
Length = 297236
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 380 atgtctcgtttttaccgttt 399
||||||||||||||||||||
Sbjct: 217322 atgtctcgtttttaccgttt 217303
>dbj| AP001889.5 | Homo sapiens genomic DNA, chromosome 11 clone:RP11-344L21, complete
sequence
Length = 186656
Score = 40.1 bits (20), Expect = 5.6
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 234 cttctagatatttgatttga 253
||||||||||||||||||||
Sbjct: 110819 cttctagatatttgatttga 110800
>gb| AC087431.3 | Homo sapiens chromosome 3 clone RP11-775C23 map 3p, complete sequence
Length = 196745
Score = 40.1 bits (20), Expect = 5.6
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 149 agtattccaaggaaaaaatattaagaaa 176
|||||||||||||||||| ||| |||||
Sbjct: 144471 agtattccaaggaaaaaaaattgagaaa 144444
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,715,461
Number of Sequences: 3902068
Number of extensions: 4715461
Number of successful extensions: 97336
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97021
Number of HSP's gapped (non-prelim): 311
length of query: 420
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 398
effective length of database: 17,147,199,772
effective search space: 6824585509256
effective search space used: 6824585509256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)