ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl01a03 |
|---|---|
| Clone Library Name | barley_pub |
>TRM2_YEAST (P33753) Endo-exonuclease NUCR (EC 3.-.-.-)| Length = 617 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +1 Query: 178 ATILVSKKQWSIITCYRHMWSLHK 249 A ++ S K+WSIITC R W++ K Sbjct: 23 AHLISSIKRWSIITCMRCFWTVQK 46
>TRX_DROVI (Q24742) Protein trithorax| Length = 3828 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Frame = +3 Query: 189 CEQETMEYNHMLQAYVVSTQKVYRNQ---YSKQGQNFGAVPITTRQHYFRFKPVGQGGET 359 C+Q+ + HM + V + ++ N+ K G N AVP+ T HY K GG Sbjct: 3263 CQQQQQQQQHM-EMVVDNGFQLTSNESCLLEKHGFNVEAVPMDTEDHYASMKNGSGGGAA 3321 Query: 360 E 362 E Sbjct: 3322 E 3322
>GATA6_CHICK (P43693) Transcription factor GATA-6 (GATA-binding factor 6)| Length = 387 Score = 29.3 bits (64), Expect = 2.4 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 9/50 (18%) Frame = +2 Query: 197 RNNGV*SHVTGICGLYTK--GLQKPIFKTR---PKFRRR----ADHHSTT 319 R +G +++ CGLYTK GL +P+ K + P RR A+ H+TT Sbjct: 193 RRDGTGNYLCNACGLYTKMNGLSRPLIKPQKRVPSSRRLGLSCANCHTTT 242
>DXR_LEPIC (Q72U08) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 389 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = +1 Query: 154 TNAPCLLGATILVSKKQWSIITCYRHMWSLHKRSTETNIQNKAKI 288 T + CLLGA+ V + ++ Y + LH S +N++ +I Sbjct: 2 TTSVCLLGASGSVGESTLKVLRAYPEKFRLHSFSVHSNLEKAKEI 46
>LEU3_OCEIH (Q8EN68) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 366 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/37 (29%), Positives = 22/37 (59%) Frame = +2 Query: 23 MVKHKFYTNNEPEEVDKKKNFCYRETWGSLIPHLPGG 133 M++H F +E +E+++ N C + + + H+PGG Sbjct: 300 MLEHSFGLVDEAKEIERAVNDCLLQGFHTADIHIPGG 336
>ROCA_STAES (Q8CN04) 1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) (P5C| dehydrogenase) Length = 514 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/62 (25%), Positives = 29/62 (46%) Frame = +1 Query: 91 PRDMGLTYSPLAWGGLIYIYSTNAPCLLGATILVSKKQWSIITCYRHMWSLHKRSTETNI 270 P G+T P + I +T AP + G T+L+ + +++T Y+ M L + + Sbjct: 171 PIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTVLTAYKLMEILEEAGLPQGV 230 Query: 271 QN 276 N Sbjct: 231 VN 232
>ROCA_STAEQ (Q5HL59) 1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) (P5C| dehydrogenase) Length = 514 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/62 (25%), Positives = 29/62 (46%) Frame = +1 Query: 91 PRDMGLTYSPLAWGGLIYIYSTNAPCLLGATILVSKKQWSIITCYRHMWSLHKRSTETNI 270 P G+T P + I +T AP + G T+L+ + +++T Y+ M L + + Sbjct: 171 PIGTGVTIPPWNFPFAIMAGTTLAPVVAGNTVLLKPAEDTVLTAYKLMEILEEAGLPQGV 230 Query: 271 QN 276 N Sbjct: 231 VN 232
>AHM4_ARATH (Q9SZW5) Putative cadmium/zinc-transporting ATPase 4 (EC 3.6.3.3)| (EC 3.6.3.5) Length = 760 Score = 27.7 bits (60), Expect = 7.0 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 16/89 (17%) Frame = +1 Query: 100 MGLTYSPLAWGGLIYIYSTNAPCLLGATILVSKKQWSIITCYRHMWS------------- 240 +G PL W ++ T +L + +L+ ++ ++ TCYR S Sbjct: 671 LGFVGYPLVWAAVLADAGTCLLVILNSMMLLRDEREAVSTCYRASTSSPVKLEEDEVEDL 730 Query: 241 ---LHKRSTETNIQNKAKISAPCRSPLDN 318 L ++S ET+ K+ S C P DN Sbjct: 731 EVGLLQKSEETS--KKSCCSGCCSGPKDN 757
>DCBD1_MOUSE (Q9D4J3) Discoidin, CUB and LCCL domain-containing protein 1| precursor Length = 503 Score = 27.3 bits (59), Expect = 9.2 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 11/65 (16%) Frame = +3 Query: 216 HMLQAYVVSTQKVYR-------NQYSKQGQNF----GAVPITTRQHYFRFKPVGQGGETE 362 H+L+A+ STQ YR +++S F GA + + Q KPVG G + Sbjct: 400 HLLRAHTFSTQSGYRVPGPRPTHKHSHSSGGFPPATGATQVESYQRPASPKPVGGGYDKP 459 Query: 363 SAMGF 377 +A F Sbjct: 460 AASSF 464
>CSN5_XENTR (Q6P635) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| (Signalosome subunit 5) Length = 334 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = +3 Query: 195 QETMEYNHMLQAYVVSTQKVYRNQYSKQGQNFGAVPITTRQHYFRF 332 Q+T E ++ +Q V S ++Y+ +Q + A P T HYF++ Sbjct: 10 QKTWELSNNMQE-VQSIDEIYKYDKKQQQEILAAKPWTKDHHYFKY 54
>PYRF_PROMP (Q7V0D8) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP| decarboxylase) (OMPDCase) (OMPdecase) Length = 239 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +1 Query: 145 IYSTNAPCLLGATILVSKKQWSIITCYRHMWSLHKRSTETNIQNKAKIS 291 I + NAPC++G T+L S T K S E N+ AK+S Sbjct: 112 IATVNAPCVIGITVLTSLSSEEFQTDLD-----RKNSIEENVIRLAKLS 155
>CSN5_XENLA (Q6GLM9) COP9 signalosome complex subunit 5 (EC 3.4.-.-)| (Signalosome subunit 5) Length = 332 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = +3 Query: 195 QETMEYNHMLQAYVVSTQKVYRNQYSKQGQNFGAVPITTRQHYFRF 332 Q+T E ++ +Q V S ++Y+ +Q + A P T HYF++ Sbjct: 8 QKTWELSNNMQE-VQSIDEIYKYDKKQQQEILAAKPWTKDHHYFKY 52 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,924,040 Number of Sequences: 219361 Number of extensions: 1173854 Number of successful extensions: 2407 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2360 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2407 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
