ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart61h11 |
|---|---|
| Clone Library Name | barley_pub |
>AROC_SYNEL (Q8DLM1) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 363 Score = 29.6 bits (65), Expect = 2.0 Identities = 21/68 (30%), Positives = 33/68 (48%) Frame = +3 Query: 75 TLGHS*CITTVSPPSFGGVSPLAAGILHYKYINKENIQITEITDERHQHRDRLTS*RPTS 254 T GH +TT GGV + G +++ +IQ + D R + RLT+ R S Sbjct: 4 TFGHLFRVTTFGESHGGGVGVVVDGCPPRLELSEVDIQ--KELDRRRPGQSRLTTPRQES 61 Query: 255 SKYQVLSG 278 + ++LSG Sbjct: 62 DRCEILSG 69
>DPOE1_MOUSE (Q9WVF7) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)| (DNA polymerase II subunit A) Length = 2283 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Frame = +3 Query: 36 TDTLQHDDTKTALTLGHS*C---ITTVSPPSFGGVSPLAAGILHYKYINKENIQITEITD 206 T+++ + +LT+ S C + + P ++GG+ +H + +++ Q E TD Sbjct: 1890 TNSIHSKEIFHSLTISFSRCWEFLLWMDPSNYGGIKGKVPSSIHCGQVKEQDSQAREETD 1949 Query: 207 ERHQHRDR 230 E + +++ Sbjct: 1950 EEEEDKEK 1957
>AROC_ANASP (Q8YYP9) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 362 Score = 29.3 bits (64), Expect = 2.6 Identities = 21/68 (30%), Positives = 31/68 (45%) Frame = +3 Query: 75 TLGHS*CITTVSPPSFGGVSPLAAGILHYKYINKENIQITEITDERHQHRDRLTS*RPTS 254 T GH ITT GGV + G I+ E IQ+ D R + ++T+ R + Sbjct: 4 TFGHLFRITTFGESHGGGVGVVIDGCPPLLEISPEEIQLE--LDRRRPGQSKITTPRKEA 61 Query: 255 SKYQVLSG 278 ++LSG Sbjct: 62 DTCEILSG 69
>ADA2A_RAT (P22909) Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor)| (Alpha-2A adrenoreceptor) (Alpha-2AAR) (CA2-47) (Alpha-2D adrenergic receptor) Length = 450 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -1 Query: 188 LYVLLIYVFVVQYARRQRGNPPERWGGYCCDA 93 L ++L+YV + Q A+R+ PP R G C A Sbjct: 210 LIMILVYVRIYQIAKRRTRVPPSRRGPDACSA 241
>ADA2A_MOUSE (Q01338) Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor)| (Alpha-2A adrenoreceptor) (Alpha-2AAR) Length = 450 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -1 Query: 188 LYVLLIYVFVVQYARRQRGNPPERWGGYCCDA 93 L ++L+YV + Q A+R+ PP R G C A Sbjct: 210 LIMILVYVRIYQIAKRRTRVPPSRRGPDACSA 241
>MOT3_MOUSE (O35308) Monocarboxylate transporter 3 (MCT 3) (Proton-coupled| monocarboxylate transporter 3) Length = 492 Score = 28.5 bits (62), Expect = 4.5 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -3 Query: 174 YLCICSAVCPPPAGKPPRK 118 + C C AV PP G PPR+ Sbjct: 186 HCCACGAVMRPPPGPPPRR 204
>ISAA_STAAW (P60157) Immunodominant staphylococcal antigen A precursor| Length = 233 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +3 Query: 126 GVSPLAAGILHYKYINKENIQITEITDERHQHRDRLTS 239 GV+ AAG H + + N+ + D H H+D+L + Sbjct: 15 GVTGYAAGTGHQAHAAEVNVDQAHLVDLAHNHQDQLNA 52
>ISAA_STAAU (P60158) Immunodominant staphylococcal antigen A precursor| (Secretory protein SAI-B) (SAI-2) Length = 233 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +3 Query: 126 GVSPLAAGILHYKYINKENIQITEITDERHQHRDRLTS 239 GV+ AAG H + + N+ + D H H+D+L + Sbjct: 15 GVTGYAAGTGHQAHAAEVNVDQAHLVDLAHNHQDQLNA 52
>ISAA_STAAS (Q6G6A5) Immunodominant staphylococcal antigen A precursor| Length = 233 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +3 Query: 126 GVSPLAAGILHYKYINKENIQITEITDERHQHRDRLTS 239 GV+ AAG H + + N+ + D H H+D+L + Sbjct: 15 GVTGYAAGTGHQAHAAEVNVDQAHLVDLAHNHQDQLNA 52
>ISAA_STAAR (Q6GDN1) Immunodominant staphylococcal antigen A precursor| Length = 233 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +3 Query: 126 GVSPLAAGILHYKYINKENIQITEITDERHQHRDRLTS 239 GV+ AAG H + + N+ + D H H+D+L + Sbjct: 15 GVTGYAAGTGHQAHAAEVNVDQAHLVDLAHNHQDQLNA 52
>ISAA_STAAN (P99160) Immunodominant staphylococcal antigen A precursor| Length = 233 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +3 Query: 126 GVSPLAAGILHYKYINKENIQITEITDERHQHRDRLTS 239 GV+ AAG H + + N+ + D H H+D+L + Sbjct: 15 GVTGYAAGTGHQAHAAEVNVDQAHLVDLAHNHQDQLNA 52
>ISAA_STAAM (P65645) Immunodominant staphylococcal antigen A precursor| Length = 233 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +3 Query: 126 GVSPLAAGILHYKYINKENIQITEITDERHQHRDRLTS 239 GV+ AAG H + + N+ + D H H+D+L + Sbjct: 15 GVTGYAAGTGHQAHAAEVNVDQAHLVDLAHNHQDQLNA 52
>ISAA_STAAC (Q5HCY1) Immunodominant staphylococcal antigen A precursor| Length = 233 Score = 27.7 bits (60), Expect = 7.6 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +3 Query: 126 GVSPLAAGILHYKYINKENIQITEITDERHQHRDRLTS 239 GV+ AAG H + + N+ + D H H+D+L + Sbjct: 15 GVTGYAAGTGHQAHAAEVNVDQAHLVDLAHNHQDQLNA 52
>SOX10_HUMAN (P56693) Transcription factor SOX-10| Length = 466 Score = 27.7 bits (60), Expect = 7.6 Identities = 13/31 (41%), Positives = 15/31 (48%) Frame = +2 Query: 125 GGFPAGGGHTALQIHK*GEHTDHRDYGRTAP 217 GG GG A+Q H H DHR G +P Sbjct: 192 GGEAEQGGTAAIQAHYKSAHLDHRHPGEGSP 222
>YP1_AGRT4 (P04028) Hypothetical protein 1 (Gene 5 protein)| Length = 172 Score = 27.7 bits (60), Expect = 7.6 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Frame = -1 Query: 284 ISPRKDLVLGRSRPLRCEPVSVLVPF-VRNLGDLYVLLIYVFVVQYARRQ 138 I P KD V+ SR + C P +PF + N+ LYV + + +YA+++ Sbjct: 59 IDPAKDEVVKCSRKVACCPDPTDIPFDILNVSLLYVYCSFQEMRRYAQQR 108
>NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer cells| cyclophilin-related protein) (NK-TR protein) Length = 1453 Score = 27.7 bits (60), Expect = 7.6 Identities = 17/57 (29%), Positives = 26/57 (45%) Frame = -1 Query: 284 ISPRKDLVLGRSRPLRCEPVSVLVPFVRNLGDLYVLLIYVFVVQYARRQRGNPPERW 114 ISP+K L ++P++ EP L P V G++ V + + PP RW Sbjct: 564 ISPKKPAQLSENKPVKTEP---LRPSVPQNGNVLVQPVAAENIPVIPLSDSPPPSRW 617
>APBB3_HUMAN (O95704) Amyloid beta A4 precursor protein-binding family B member| 3 (Fe65-like protein 2) (Fe65L2) Length = 486 Score = 27.7 bits (60), Expect = 7.6 Identities = 22/69 (31%), Positives = 28/69 (40%) Frame = +1 Query: 67 PPSLWGIHDASQQYPPHLSGGFPRWRRAYCTTNT*IRRTYRSPRLRTNGTNTETGSHLRG 246 PP IHDA+ Y H+ G +W+R T+ GT TE + G Sbjct: 32 PPGWRKIHDAAGTYYWHVPSGSTQWQRP----------TWELGDAEDPGTGTE---GIWG 78 Query: 247 LLLPSTRSF 273 L P RSF Sbjct: 79 LRPPKGRSF 87
>NOCR_AGRT7 (P35112) Regulatory protein nocR| Length = 300 Score = 27.3 bits (59), Expect = 9.9 Identities = 19/65 (29%), Positives = 30/65 (46%) Frame = +3 Query: 15 PNQGTKTTDTLQHDDTKTALTLGHS*CITTVSPPSFGGVSPLAAGILHYKYINKENIQIT 194 P+Q +LQH D ++ G +TT PSF V L G ++ +KE + T Sbjct: 129 PSQTVLELVSLQHYDLGISILAGDYPGLTTEPVPSFRAVCLLPPG---HRLEDKETVHAT 185 Query: 195 EITDE 209 ++ E Sbjct: 186 DLEGE 190
>NOCR_AGRT5 (Q00678) Regulatory protein nocR| Length = 300 Score = 27.3 bits (59), Expect = 9.9 Identities = 19/65 (29%), Positives = 30/65 (46%) Frame = +3 Query: 15 PNQGTKTTDTLQHDDTKTALTLGHS*CITTVSPPSFGGVSPLAAGILHYKYINKENIQIT 194 P+Q +LQH D ++ G +TT PSF V L G ++ +KE + T Sbjct: 129 PSQTVLELVSLQHYDLGISILAGDYPGLTTEPVPSFRAVCLLPPG---HRLEDKETVHAT 185 Query: 195 EITDE 209 ++ E Sbjct: 186 DLEGE 190 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,934,070 Number of Sequences: 219361 Number of extensions: 1253038 Number of successful extensions: 3200 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3103 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3194 length of database: 80,573,946 effective HSP length: 80 effective length of database: 63,025,066 effective search space used: 1512601584 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
