ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61h10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL161513.2|ATCHRIV25 Arabidopsis thaliana DNA chromosome 4, ... 44 0.20
2gb|AF128396.1|T3H13 Arabidopsis thaliana BAC T3H13 44 0.20
3emb|AL357115.24| Human DNA sequence from clone RP11-102P23 on ch... 42 0.77
4gb|AY171599.2| Homo sapiens TAK1-like protein mRNA, complete cds 40 3.1
5emb|CT009533.6| Platypus DNA sequence from clone XX-522J9, compl... 40 3.1
6emb|AL163249.2|HS21C049 Homo sapiens chromosome 21 segment HS21C049 40 3.1
7gb|AF129075.3| Homo sapiens chromosome 21 clone RP1-100J12, Rp1-... 40 3.1
8dbj|BS000170.1| Pan troglodytes chromosome 22 clone:PTB-083K24, ... 40 3.1
9dbj|BS000157.1| Pan troglodytes chromosome 22 clone:RP43-154K22,... 40 3.1
10ref|NM_020152.2| Homo sapiens chromosome 21 open reading frame 7... 40 3.1
11dbj|D42052.1|HUMKIAA000 Homo sapiens cosmid Q7A10 (D21S246) inse... 40 3.1

>emb|AL161513.2|ATCHRIV25 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 25
          Length = 179771

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 3     tagtacacaaattacataatta 24
             ||||||||||||||||||||||
Sbjct: 98278 tagtacacaaattacataatta 98257



to top

>gb|AF128396.1|T3H13 Arabidopsis thaliana BAC T3H13
          Length = 118737

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 3     tagtacacaaattacataatta 24
             ||||||||||||||||||||||
Sbjct: 64572 tagtacacaaattacataatta 64551



to top

>emb|AL357115.24| Human DNA sequence from clone RP11-102P23 on chromosome Xq13.3-21.1
             Contains the 5' end of the NSBP1 gene for nucleosomal
             binding protein 1 and the SH3BGRL gene for SH3 domain
             binding glutamic acid-rich protein like, complete sequence
          Length = 164012

 Score = 42.1 bits (21), Expect = 0.77
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 87    atcttcacaactccttaggaaacac 111
             ||||||||||||| |||||||||||
Sbjct: 79042 atcttcacaactctttaggaaacac 79066



to top

>gb|AY171599.2| Homo sapiens TAK1-like protein mRNA, complete cds
          Length = 1997

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 216 gccccacggctgcccttgta 235
           ||||||||||||||||||||
Sbjct: 23  gccccacggctgcccttgta 4



to top

>emb|CT009533.6| Platypus DNA sequence from clone XX-522J9, complete sequence
          Length = 149919

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 155  tgatcagaaacccacagcaa 174
            ||||||||||||||||||||
Sbjct: 7563 tgatcagaaacccacagcaa 7582



to top

>emb|AL163249.2|HS21C049 Homo sapiens chromosome 21 segment HS21C049
          Length = 340000

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   gccccacggctgcccttgta 235
             ||||||||||||||||||||
Sbjct: 96407 gccccacggctgcccttgta 96388



to top

>gb|AF129075.3| Homo sapiens chromosome 21 clone RP1-100J12, Rp1-P79E4 map q21.3-22.11,
             complete sequence
          Length = 190837

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   gccccacggctgcccttgta 235
             ||||||||||||||||||||
Sbjct: 96241 gccccacggctgcccttgta 96222



to top

>dbj|BS000170.1| Pan troglodytes chromosome 22 clone:PTB-083K24, map 22, partial
             sequences, complete sequence
          Length = 64375

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   gccccacggctgcccttgta 235
             ||||||||||||||||||||
Sbjct: 62031 gccccacggctgcccttgta 62012



to top

>dbj|BS000157.1| Pan troglodytes chromosome 22 clone:RP43-154K22, map 22, complete
            sequences
          Length = 192836

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 216  gccccacggctgcccttgta 235
            ||||||||||||||||||||
Sbjct: 8343 gccccacggctgcccttgta 8324



to top

>ref|NM_020152.2| Homo sapiens chromosome 21 open reading frame 7 (C21orf7), mRNA
          Length = 1997

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 216 gccccacggctgcccttgta 235
           ||||||||||||||||||||
Sbjct: 23  gccccacggctgcccttgta 4



to top

>dbj|D42052.1|HUMKIAA000 Homo sapiens cosmid Q7A10 (D21S246) insert DNA, complete sequence
          Length = 41924

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 216 gccccacggctgcccttgta 235
           ||||||||||||||||||||
Sbjct: 772 gccccacggctgcccttgta 791


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,714,475
Number of Sequences: 3902068
Number of extensions: 1714475
Number of successful extensions: 32282
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32265
Number of HSP's gapped (non-prelim): 17
length of query: 238
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 216
effective length of database: 17,147,199,772
effective search space: 3703795150752
effective search space used: 3703795150752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top