ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HRPH_PSESY (Q01723) Hypersensitivity response secretion protein ... 30 1.9
2ITPA_MOUSE (Q9D892) Inosine triphosphate pyrophosphatase (EC 3.6... 29 3.3
3VGLE_HHV1F (Q703F0) Glycoprotein E precursor 27 9.6

>HRPH_PSESY (Q01723) Hypersensitivity response secretion protein hrpH precursor|
          Length = 701

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 346 CGGNQSWRRW*LVEDRLWFQPGHPSDHYHHPRSPRVDKVEKQQR 215
           CGG   W          W QPG  S+ Y   R P++ K+ K+ R
Sbjct: 651 CGGR--WVIGVAAWPHAWLQPGEESEVYIAVRQPQISKMAKESR 692



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>ITPA_MOUSE (Q9D892) Inosine triphosphate pyrophosphatase (EC 3.6.1.19)|
           (ITPase) (Inosine triphosphatase)
          Length = 198

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = +1

Query: 175 NPNQA*LVCRRRRTAVVFPPCPHEDFEGDDSDQKDGQVETIADLPRVTSASNFDSH 342
           +P+Q  L+ R + +  +  P    DF  D   Q DG  +T A++P+  S  N  SH
Sbjct: 124 DPSQPVLLFRGQTSGQIVMPRGSRDFGWDPCFQPDGYEQTYAEMPK--SEKNTISH 177



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>VGLE_HHV1F (Q703F0) Glycoprotein E precursor|
          Length = 552

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 229 PPCPHEDFEGDDSDQKDGQVETIADLP 309
           PP P  D++ DD+D+ +G+ E++A  P
Sbjct: 170 PPTP-ADYDEDDNDEGEGEDESLAGTP 195


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,069,987
Number of Sequences: 219361
Number of extensions: 877942
Number of successful extensions: 2333
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2332
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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