ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61g03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DAPA_SILPO (Q5LMK7) Dihydrodipicolinate synthase (EC 4.2.1.52) (... 34 0.078
2DPH2_DEBHA (Q6BMF6) Diphthamide biosynthesis protein 2 32 0.50
3DAPA1_STRCO (O86841) Dihydrodipicolinate synthase 1 (EC 4.2.1.52... 30 1.1
4RPOB1_MYCSM (Q50388) DNA-directed RNA polymerase beta chain (EC ... 30 1.1
5DHBF_BACSU (P45745) Dimodular nonribosomal peptide synthetase 30 1.5
6RPOB2_NOCFA (Q5YPE0) DNA-directed RNA polymerase beta chain 2 (E... 30 1.5
7DAPA_RICFE (Q4ULR2) Dihydrodipicolinate synthase (EC 4.2.1.52) (... 30 1.5
8TACC2_HUMAN (O95359) Transforming acidic coiled-coil-containing ... 30 1.5
9DAPA_RHILO (P58207) Dihydrodipicolinate synthase (EC 4.2.1.52) (... 30 1.5
10DAPA_METKA (Q8TUZ4) Dihydrodipicolinate synthase (EC 4.2.1.52) (... 30 1.5
11LOXL1_BOVIN (Q95L39) Lysyl oxidase homolog 1 precursor (EC 1.4.3... 30 1.9
12DPH2_CANAL (Q59SJ9) Diphthamide biosynthesis protein 2 30 1.9
13CD2L1_HUMAN (P21127) PITSLRE serine/threonine-protein kinase CDC... 29 2.5
14HWP1_CANAL (P46593) Hyphal wall protein 1 (Cell elongation prote... 29 2.5
15ABFA_STRLI (P53627) Alpha-N-arabinofuranosidase (EC 3.2.1.55) (A... 29 2.5
16NCF1_HUMAN (P14598) Neutrophil cytosol factor 1 (NCF-1) (Neutrop... 28 4.3
17CHI2_COCIM (P54197) Endochitinase 2 precursor (EC 3.2.1.14) 28 4.3
18BACC_BACLI (O68008) Bacitracin synthetase 3 (BA3) [Includes: ATP... 28 5.6
19DAPA_RICPR (O05969) Dihydrodipicolinate synthase (EC 4.2.1.52) (... 28 5.6
20DAPA1_RHIME (Q92R55) Dihydrodipicolinate synthase (EC 4.2.1.52) ... 28 5.6
21SYV_BACSU (Q05873) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 28 5.6
22GRIK1_MOUSE (Q60934) Glutamate receptor, ionotropic kainate 1 pr... 28 7.3
23DAPA_RICRI (Q9AKJ9) Dihydrodipicolinate synthase (EC 4.2.1.52) (... 28 7.3
24DAPA_RICMO (Q9AKQ3) Dihydrodipicolinate synthase (EC 4.2.1.52) (... 28 7.3
25DAPA_RICCN (Q92I25) Dihydrodipicolinate synthase (EC 4.2.1.52) (... 28 7.3
26Y1062_PYRAB (Q9UZT4) Hypothetical protein PYRAB10620 28 7.3
27DAPA_NEIMA (Q9JUU9) Dihydrodipicolinate synthase (EC 4.2.1.52) (... 28 7.3
28GRSB_ANEMI (P0C063) Gramicidin S synthetase 2 (Gramicidin S synt... 27 9.5
29G3P_HALVA (Q48335) Glyceraldehyde-3-phosphate dehydrogenase (EC ... 27 9.5
30SRFAB_BACSU (Q04747) Surfactin synthetase subunit 2 27 9.5
31ISPD_PORGI (Q7MUQ9) 2-C-methyl-D-erythritol 4-phosphate cytidyly... 27 9.5
32TARSH_HUMAN (Q7Z7G0) Target of Nesh-SH3 precursor (Tarsh) (Nesh-... 27 9.5
33GRSB_BREBE (P0C064) Gramicidin S synthetase 2 (Gramicidin S synt... 27 9.5
34PAL2_ORYSA (P53443) Phenylalanine ammonia-lyase (EC 4.3.1.5) 27 9.5

>DAPA_SILPO (Q5LMK7) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)|
          Length = 290

 Score = 34.3 bits (77), Expect = 0.078
 Identities = 22/68 (32%), Positives = 35/68 (51%)
 Frame = -2

Query: 347 EAGKAKDYPRAREIHDRLLPVTKAVYHRGSHMEGTVALKHALVARGILKHAQIRGTLLPL 168
           +A  A DY +A +  DRL+P+ +A++       G V  K+AL   G+    ++R  L  L
Sbjct: 218 QATLAGDYAKALDYQDRLMPLHEAIFIE----PGLVGAKYALSKLGLCSE-EVRSPLTGL 272

Query: 167 EDGAEIEI 144
           ED  +  I
Sbjct: 273 EDSTKAAI 280



to top

>DPH2_DEBHA (Q6BMF6) Diphthamide biosynthesis protein 2|
          Length = 588

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +3

Query: 192 LGVLEDTSGDQGVLQSDGTFHVRSSMVDRFGDREKTVVDLPSAGIVFGLP 341
           L +L DTS     +      HV S +V  FGD    VV+   A  VFG P
Sbjct: 137 LWILADTSYSSCCIDEVAAGHVNSDLVIHFGDACLNVVESLPAAYVFGKP 186



to top

>DAPA1_STRCO (O86841) Dihydrodipicolinate synthase 1 (EC 4.2.1.52) (DHDPS 1)|
          Length = 299

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -2

Query: 353 LIEAGKAKDYPRAREIHDRLLPVTKAVYHRGSHMEGTVALKHALVARGI 207
           +++A  A D  +A EIH +LLPV   ++      +G +  K AL  +G+
Sbjct: 224 MVDAHVAGDVQKALEIHQKLLPVFTGMF----RTQGVMTTKGALALQGL 268



to top

>RPOB1_MYCSM (Q50388) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1169

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 21/89 (23%), Positives = 39/89 (43%)
 Frame = +3

Query: 33  IDRETTRFEYKVSFHGIIKLSGLSGDTGQLGGLDRIMDLDFSAVLQRQEGTSDLGVLEDT 212
           +D +T  FE+ V    + + +   G+   +GGL+ ++              ++L  +ED 
Sbjct: 45  LDVQTDSFEWLVGSRRVRQAAIDRGEENPVGGLEEVL--------------AELSPIEDF 90

Query: 213 SGDQGVLQSDGTFHVRSSMVDRFGDREKT 299
           SG   +  SD  F    + VD   D++ T
Sbjct: 91  SGSMSLSFSDPRFDEVKASVDECKDKDMT 119



to top

>DHBF_BACSU (P45745) Dimodular nonribosomal peptide synthetase|
          Length = 2378

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +2

Query: 149  RFQRRPPEARGYL---GSGRA*GYLGRPRRASER 241
            R Q  PP   G L   G+G A GYLGRP   SER
Sbjct: 1861 RLQPVPPGVAGELYVSGAGLARGYLGRPGLTSER 1894



to top

>RPOB2_NOCFA (Q5YPE0) DNA-directed RNA polymerase beta chain 2 (EC 2.7.7.6)|
           (RNAP beta subunit 2) (Transcriptase beta chain 2) (RNA
           polymerase beta subunit 2)
          Length = 1163

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/89 (21%), Positives = 38/89 (42%)
 Frame = +3

Query: 33  IDRETTRFEYKVSFHGIIKLSGLSGDTGQLGGLDRIMDLDFSAVLQRQEGTSDLGVLEDT 212
           +D +T  F + +      + +   GD G +GGL+ +++              +L  +ED 
Sbjct: 41  LDLQTESFAWLIGSPEWRERAAARGDVGLVGGLEEVLE--------------ELSPIEDF 86

Query: 213 SGDQGVLQSDGTFHVRSSMVDRFGDREKT 299
           SG   +  SD  F    + +D   +++ T
Sbjct: 87  SGSMSLSFSDPRFEEVKASIDECKEKDMT 115



to top

>DAPA_RICFE (Q4ULR2) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)|
          Length = 294

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 21/72 (29%), Positives = 37/72 (51%)
 Frame = -2

Query: 353 LIEAGKAKDYPRAREIHDRLLPVTKAVYHRGSHMEGTVALKHALVARGILKHAQIRGTLL 174
           L+E     D   A EIH +LLP+ KA++   +     + +K+A    G+ ++ +IR  L 
Sbjct: 219 LLEKWNKNDTKGALEIHQKLLPLYKALFVESN----PIPIKYAAYYLGLCEN-EIRLPLT 273

Query: 173 PLEDGAEIEIHD 138
              D A+ +I +
Sbjct: 274 EASDSAKKQIEN 285



to top

>TACC2_HUMAN (O95359) Transforming acidic coiled-coil-containing protein 2 (Anti|
           Zuai-1) (AZU-1)
          Length = 1026

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -3

Query: 352 LSKPGRPKTIPALGRSTTVFSRSPKRSTIEDLTWKVPSL*STPWSPEVSSS 200
           L+KP + K  P L   T    +SPKRS + D   + P+  +TP +P V S+
Sbjct: 493 LNKPAKKKKTP-LKTDTFRVKKSPKRSPLSDPPSQDPTPAATPETPPVISA 542



to top

>DAPA_RHILO (P58207) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)|
          Length = 293

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 21/68 (30%), Positives = 36/68 (52%)
 Frame = -2

Query: 347 EAGKAKDYPRAREIHDRLLPVTKAVYHRGSHMEGTVALKHALVARGILKHAQIRGTLLPL 168
           EA  + D  +A E+ DRLLP+ KA++       G    K+AL   G +++  +R  L+ +
Sbjct: 220 EATLSGDSVKALELQDRLLPLHKAIFLE----PGVSGAKYALSKLGKVENV-LRSPLVTV 274

Query: 167 EDGAEIEI 144
           E+    +I
Sbjct: 275 EESTAAKI 282



to top

>DAPA_METKA (Q8TUZ4) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)|
          Length = 300

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -2

Query: 353 LIEAGKAKDYPRAREIHDRLLPVTKAVY 270
           + EA K+ D  RARE+H  LLP+ +A++
Sbjct: 222 MYEAWKSGDVERARELHYELLPLHRALF 249



to top

>LOXL1_BOVIN (Q95L39) Lysyl oxidase homolog 1 precursor (EC 1.4.3.-) (Lysyl|
           oxidase-like protein 1)
          Length = 591

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = -1

Query: 276 GLPSRISHGRYRRSEARLGRPRYPQARPDPRYPLASGG 163
           GL  R SH  Y    A L  P YP   PD   P   GG
Sbjct: 266 GLDRRYSHSLYHEGTAGL-EPAYPDPGPDAAQPNGGGG 302



to top

>DPH2_CANAL (Q59SJ9) Diphthamide biosynthesis protein 2|
          Length = 529

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = +3

Query: 198 VLEDTSGDQGVLQSDGTFHVRSSMVDRFGDREKTVVDLPSAGIVFGLPGFD 350
           +L DTS     +      HVRS +V  FGD     +D   A  V G P  D
Sbjct: 120 ILADTSYSACCVDEVAAEHVRSDLVVHFGDACLNEIDKLQAVFVLGKPTLD 170



to top

>CD2L1_HUMAN (P21127) PITSLRE serine/threonine-protein kinase CDC2L1 (EC|
           2.7.11.22) (Galactosyltransferase-associated protein
           kinase p58/GTA) (Cell division cycle 2-like protein
           kinase 1) (CLK-1) (CDK11) (p58 CLK-1)
          Length = 795

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 20/47 (42%), Positives = 23/47 (48%)
 Frame = +2

Query: 140 HGSRFQRRPPEARGYLGSGRA*GYLGRPRRASERRYLPCEILDGRPL 280
           H SR   RPP  R  LG GR  G   RP RA +   L  E ++ R L
Sbjct: 230 HWSRSPPRPPRERFELGDGRKPGE-ARPARAQKPAQLKEEKMEERDL 275



to top

>HWP1_CANAL (P46593) Hyphal wall protein 1 (Cell elongation protein 2)|
          Length = 634

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -3

Query: 346 KPGRPKTIPALGRSTTVFSRSPKRSTIEDLTWKVPSL*STPWSPEVSSSTPRSEVPS 176
           KP  P T P +  +TT    S   S+    T    S  +TP S  V ++TP + VP+
Sbjct: 191 KPTTPATTPNIPATTTTSESSSSSSSSSSSTTPKTSASTTPES-SVPATTPNTSVPT 246



to top

>ABFA_STRLI (P53627) Alpha-N-arabinofuranosidase (EC 3.2.1.55) (Arabinosidase)|
           (ABF) (Alpha-L-AF)
          Length = 662

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 98  PIRRHWTTWRP*SHHGSRFQRRPPEA 175
           P R+ WT W P    GS  +R P EA
Sbjct: 583 PFRKTWTRWAPAPRSGSPSRRSPTEA 608



to top

>NCF1_HUMAN (P14598) Neutrophil cytosol factor 1 (NCF-1) (Neutrophil NADPH|
           oxidase factor 1) (47 kDa neutrophil oxidase factor)
           (p47-phox) (NCF-47K) (47 kDa autosomal chronic
           granulomatous disease protein) (NOXO2)
          Length = 390

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 264 RISHGRYRRSEARLGRPRYPQARPDPRYP 178
           R+S   YRR+  R  + R  QARP P+ P
Sbjct: 318 RLSQDAYRRNSVRFLQQRRRQARPGPQSP 346



to top

>CHI2_COCIM (P54197) Endochitinase 2 precursor (EC 3.2.1.14)|
          Length = 860

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 307 STTVFSRSPKRSTIEDLTWKVPSL*STPWSPEVSSSTPRSEVPS 176
           STT+ +RS    T+   + + PS   + WS    +ST   + PS
Sbjct: 435 STTISTRSASTETVTTRSQEPPSTTISTWSASTETSTSSQDSPS 478



to top

>BACC_BACLI (O68008) Bacitracin synthetase 3 (BA3) [Includes: ATP-dependent|
            isoleucine adenylase (IleA) (Isoleucine activase);
            ATP-dependent D-phenylalanine adenylase (D-PheA)
            (D-phenylalanine activase); ATP-dependent histidine
            adenylase (HisA) (Histidine
          Length = 6359

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
 Frame = +2

Query: 29   LHRQRNYTFRVQGFLSWDYQAVWPIRRHWTTWRP*SHH-----GSRFQRRPPEARGYL-- 187
            ++ +   T  V G + + Y A W  +      +P S+        R + +P    G L  
Sbjct: 5827 IYNEYGPTETVVGCMIYQYDAGWDRQVSVPIGKPASNVQLYILDERQEVQPVGIAGELYI 5886

Query: 188  -GSGRA*GYLGRPRRASERRYLPCEILDGRPLW*PGEDGRGSPE 316
             G G A GYL +P   SE ++LP   L G  ++  G+  +  P+
Sbjct: 5887 SGDGVAKGYLNKPELTSE-KFLPNPFLPGERMYRTGDLAKMRPD 5929



to top

>DAPA_RICPR (O05969) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)|
          Length = 294

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 21/70 (30%), Positives = 36/70 (51%)
 Frame = -2

Query: 353 LIEAGKAKDYPRAREIHDRLLPVTKAVYHRGSHMEGTVALKHALVARGILKHAQIRGTLL 174
           L+E     D   A EIH +LLP+ KA++   +     + +K+A    G+ ++ +IR  L 
Sbjct: 219 LLEKWYNNDTQGALEIHQKLLPLYKALFLESN----PIPVKYAAYYLGLCEN-EIRLPLT 273

Query: 173 PLEDGAEIEI 144
              D A+ +I
Sbjct: 274 EASDSAKKQI 283



to top

>DAPA1_RHIME (Q92R55) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)|
          Length = 294

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -2

Query: 347 EAGKAKDYPRAREIHDRLLPVTKAVYHRGSHMEGTVALKHALVARGILKHAQIRGTLL 174
           EA  A +Y +A E+ D+L+P+ KA++       G    K+AL   G +    +R  LL
Sbjct: 220 EATLAGNYAKALELQDKLMPLHKAIFLE----PGVCGAKYALNRLGRMSFT-VRSPLL 272



to top

>SYV_BACSU (Q05873) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 880

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 228 VLQSDGTFHVRSSM---VDRFGDREKTVVDLPSAGIVF 332
           V+  DGT +  +     +DRF  R+K V DL  AG++F
Sbjct: 300 VMNEDGTMNENALQYQGMDRFECRKKLVKDLQEAGVLF 337



to top

>GRIK1_MOUSE (Q60934) Glutamate receptor, ionotropic kainate 1 precursor|
           (Glutamate receptor 5) (GluR-5) (GluR5)
          Length = 836

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
 Frame = +3

Query: 72  FHGIIKLSGLSGDTGQL-----GGLDRIMDLDFSAVLQRQEGTSDLGVLEDTSGDQGVLQ 236
           F  +IK +   G TG++      GL +  DLD  ++  ++EGT  +G+    S   G+  
Sbjct: 360 FMNLIKEARWDGLTGRITFNKTDGLRKDFDLDIISL--KEEGTEKIGIWNSNS---GLNM 414

Query: 237 SDGTFHVRSSMVDRFGDREKTVVDL 311
           +DG     +++ D   +R   V  +
Sbjct: 415 TDGNRDRSNNITDSLANRTLIVTTI 439



to top

>DAPA_RICRI (Q9AKJ9) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)|
          Length = 294

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = -2

Query: 353 LIEAGKAKDYPRAREIHDRLLPVTKAVYHRGSHMEGTVALKHALVARGILKHAQIRGTLL 174
           L+E     D   A EIH +LLP+  A++   +     + +K+A    G+ ++ +IR  L 
Sbjct: 219 LLEKWNKNDTKGALEIHQKLLPLYTALFVESN----PIPIKYAAHYLGLCEN-EIRPPLT 273

Query: 173 PLEDGAEIEIHD 138
              D A+ +I +
Sbjct: 274 EASDSAKKQIEN 285



to top

>DAPA_RICMO (Q9AKQ3) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)|
          Length = 294

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = -2

Query: 353 LIEAGKAKDYPRAREIHDRLLPVTKAVYHRGSHMEGTVALKHALVARGILKHAQIRGTLL 174
           L+E     D   A EIH +LLP+  A++   +     + +K+A    G+ ++ +IR  L 
Sbjct: 219 LLEKWNKNDTKGALEIHQKLLPLYTALFVESN----PIPIKYAAHYLGLCEN-EIRPPLT 273

Query: 173 PLEDGAEIEIHD 138
              D A+ +I +
Sbjct: 274 EASDSAKKQIEN 285



to top

>DAPA_RICCN (Q92I25) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)|
          Length = 294

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = -2

Query: 353 LIEAGKAKDYPRAREIHDRLLPVTKAVYHRGSHMEGTVALKHALVARGILKHAQIRGTLL 174
           L+E     D   A EIH +LLP+  A++   +     + +K+A    G+ ++ +IR  L 
Sbjct: 219 LLEKWNKNDTKGALEIHQKLLPLYTALFVESN----PIPIKYAAHYLGLCEN-EIRPPLT 273

Query: 173 PLEDGAEIEIHD 138
              D A+ +I +
Sbjct: 274 EASDSAKKQIEN 285



to top

>Y1062_PYRAB (Q9UZT4) Hypothetical protein PYRAB10620|
          Length = 259

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 78  GIIKLSGLSGDTGQLGGLDRIMDLDFSAVLQRQEGTSDLGVLED 209
           G++ L  L G  G  G ++ I+D   S   + QE   D  +LE+
Sbjct: 10  GVVHLLPLPGSPGYRGSIEEILDRAISDAAKYQEAGFDAIILEN 53



to top

>DAPA_NEIMA (Q9JUU9) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)|
          Length = 291

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 19/62 (30%), Positives = 33/62 (53%)
 Frame = -2

Query: 329 DYPRAREIHDRLLPVTKAVYHRGSHMEGTVALKHALVARGILKHAQIRGTLLPLEDGAEI 150
           D   ARE++DRL+P+   ++   S      A K A+ A G  +   +R  L+PL +G + 
Sbjct: 225 DIALARELNDRLIPIYDTMFCEPS----PAAPKWAVSALGRCE-PHVRLPLVPLTEGGQA 279

Query: 149 EI 144
           ++
Sbjct: 280 KV 281



to top

>GRSB_ANEMI (P0C063) Gramicidin S synthetase 2 (Gramicidin S synthetase II)|
            [Includes: ATP-dependent proline adenylase (ProA)
            (Proline activase); ATP-dependent valine adenylase (ValA)
            (Valine activase); ATP-dependent ornithine adenylase
            (OrnA) (Ornithine
          Length = 4450

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 188  GSGRA*GYLGRPRRASERRYLPCEILDGRPLW*PGEDGRGSPE 316
            G+G A GYL RP   +E +++P   + G  L+  G+  R  P+
Sbjct: 2893 GAGVARGYLNRPDLTAE-KFVPNPFVPGEKLYRTGDLARWMPD 2934



to top

>G3P_HALVA (Q48335) Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59)|
           (GAPDH) (NAD(P)-dependent glyceraldehyde-3-phosphate
           dehydrogenase)
          Length = 335

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +3

Query: 93  SGLSGDTGQLGGLDRIMD---LDFSAVLQRQEGTSDLGVLEDTSGDQGVLQSDGT 248
           + L  D  ++ G++ +MD   +D+ A     +  S +G LE  S D GVL  DGT
Sbjct: 23  ASLHSDDVEIVGINDVMDDSEIDYFA-----QYDSVMGELEGASVDDGVLTVDGT 72



to top

>SRFAB_BACSU (Q04747) Surfactin synthetase subunit 2|
          Length = 3587

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +2

Query: 164  PPEARGYL---GSGRA*GYLGRPRRASER 241
            PP A G L   G G A GYL RP+  +ER
Sbjct: 1841 PPGASGQLYITGQGLARGYLNRPQLTAER 1869



to top

>ISPD_PORGI (Q7MUQ9) 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase|
           (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol
           synthase) (MEP cytidylyltransferase) (MCT)
          Length = 222

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -2

Query: 296 LLPVTKAVYHRGSHMEGTVALKHALVARGILKHAQIRGTLLPLEDGAEIEIHD 138
           +LP     Y +    +   ++ H +VA G  + A +R  L  + DG  + +HD
Sbjct: 52  VLPTDHHAYWQELCRKYDFSVSHRVVAGGNTRFASVRNGLQVVPDGVLVAVHD 104



to top

>TARSH_HUMAN (Q7Z7G0) Target of Nesh-SH3 precursor (Tarsh) (Nesh-binding|
           protein) (NeshBP) (ABI gene family member 3-binding
           protein)
          Length = 1075

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -3

Query: 352 LSKPGRPK-TIPALGRSTTVFSRSPKRSTIEDLTWKVPSL*STPWSPEVSSSTPRSEVP 179
           +SK   P  T PA G+ T   S  PK     ++T   P+   TP +P    ++PR  +P
Sbjct: 496 ISKSPEPTWTTPAPGK-TQFISLKPKIPLSPEVTHTKPAPKQTPRAPPKPKTSPRPRIP 553



to top

>GRSB_BREBE (P0C064) Gramicidin S synthetase 2 (Gramicidin S synthetase II)|
            [Includes: ATP-dependent proline adenylase (ProA)
            (Proline activase); ATP-dependent valine adenylase (ValA)
            (Valine activase); ATP-dependent ornithine adenylase
            (OrnA) (Ornithine
          Length = 4449

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 188  GSGRA*GYLGRPRRASERRYLPCEILDGRPLW*PGEDGRGSPE 316
            G+G A GYL RP   +E +++P   + G  L+  G+  R  P+
Sbjct: 2891 GAGVARGYLNRPDLTAE-KFVPNPFVPGEKLYRTGDLARWMPD 2932



to top

>PAL2_ORYSA (P53443) Phenylalanine ammonia-lyase (EC 4.3.1.5)|
          Length = 710

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 287 VTKAVYHRGSHMEGTVALKHALVARGILKHAQIRGTLLPL 168
           +T  + H    +E    +KH L     +KHA+  G L PL
Sbjct: 300 LTHKLKHHPGQIEAAAIMKHILEGSSYMKHAKKLGELDPL 339


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,069,593
Number of Sequences: 219361
Number of extensions: 1084523
Number of successful extensions: 3269
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 3160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3269
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top