ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 56 8e-05
2dbj|AP003682.3| Oryza sativa (japonica cultivar-group) genomic D... 56 8e-05
3emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 48 0.020
4ref|XM_234518.3| PREDICTED: Rattus norvegicus serine (or cystein... 46 0.078
5emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete ... 44 0.31
6gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.2
7ref|XM_511022.1| PREDICTED: Pan troglodytes similar to TNFRSF1A-... 40 4.8
8ref|XM_474336.1| Oryza sativa (japonica cultivar-group), predic... 40 4.8
9ref|XM_368047.1| Magnaporthe grisea 70-15 chromosome III hypothe... 40 4.8
10ref|XM_580868.2| PREDICTED: Bos taurus similar to TNFRSF1A-assoc... 40 4.8
11gb|BC004491.2| Homo sapiens TNFRSF1A-associated via death domain... 40 4.8
12gb|AY575851.1| Homo sapiens TNFRSF1A-associated via death domain... 40 4.8
13ref|XM_755900.1| Ustilago maydis 521 hypothetical protein (UM048... 40 4.8
14gb|BC112743.1| Bos taurus similar to TNFRSF1A-associated via dea... 40 4.8
15emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4,... 40 4.8
16gb|BT007794.1| Synthetic construct Homo sapiens TNFRSF1A-associa... 40 4.8
17gb|BT006934.1| Homo sapiens TNFRSF1A-associated via death domain... 40 4.8
18dbj|AK090673.1| Homo sapiens cDNA FLJ33354 fis, clone BRACE20051... 40 4.8
19gb|AE012443.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 4.8
20ref|NM_153425.1| Homo sapiens TNFRSF1A-associated via death doma... 40 4.8
21ref|NM_003789.2| Homo sapiens TNFRSF1A-associated via death doma... 40 4.8
22gb|AC156633.2| Mus musculus BAC clone RP24-421P3 from chromosome... 40 4.8
23gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 4.8
24gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 4.8
25dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
26dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
27gb|AC040160.4|AC040160 Homo sapiens chromosome 16 clone CTC-277H... 40 4.8
28gb|AY227810.1| Emericella nidulans snfA gene, partial sequence 40 4.8
29gb|AC074143.5| Homo sapiens chromosome 16 clone RP11-5A19, compl... 40 4.8
30gb|AY995114.1| Homo sapiens tumor necrosis factor receptor 1-ass... 40 4.8
31dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 4.8
32dbj|AP006052.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
33gb|AY892172.1| Synthetic construct Homo sapiens clone FLH014254.... 40 4.8
34gb|AY889716.1| Synthetic construct Homo sapiens clone FLH014258.... 40 4.8
35gb|AY112603.1| Zea mays CL43526_1 mRNA sequence 40 4.8
36emb|AL732350.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 4.8
37emb|AL732351.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 4.8
38emb|AJ311616.1|HSA311616 Homo sapiens partial TRADD gene for TNF... 40 4.8
39gb|L41690.1|HUMTRADD Homo sapiens TNF receptor-1 associated prot... 40 4.8 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                        
Query: 198      gtagaaccccgcgaagtcgacggcgtccggcccaaacgcg 237
                ||||||||| |||||||||||||||||||| || ||||||
Sbjct: 20649043 gtagaacccggcgaagtcgacggcgtccgggccgaacgcg 20649082



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                      
Query: 252      gtcgccgtcaagcagcagcctcgccctcttctcgccgc 289
                ||||||||| |||||||||||||| | |||||||||||
Sbjct: 20649091 gtcgccgtcgagcagcagcctcgcgcgcttctcgccgc 20649128



 Score = 46.1 bits (23), Expect = 0.078
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                           
Query: 86       atcagtacccactgtccactccaaaggcaaacgagcagccggc 128
                ||||||| || ||||||||||| || || ||||||||||||||
Sbjct: 20648937 atcagtagccgctgtccactccgaaagcgaacgagcagccggc 20648979
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>dbj|AP003682.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0427B07
          Length = 172058

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 198   gtagaaccccgcgaagtcgacggcgtccggcccaaacgcg 237
             ||||||||| |||||||||||||||||||| || ||||||
Sbjct: 71450 gtagaacccggcgaagtcgacggcgtccgggccgaacgcg 71489



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 252   gtcgccgtcaagcagcagcctcgccctcttctcgccgc 289
             ||||||||| |||||||||||||| | |||||||||||
Sbjct: 71498 gtcgccgtcgagcagcagcctcgcgcgcttctcgccgc 71535



 Score = 46.1 bits (23), Expect = 0.078
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 86    atcagtacccactgtccactccaaaggcaaacgagcagccggc 128
             ||||||| || ||||||||||| || || ||||||||||||||
Sbjct: 71344 atcagtagccgctgtccactccgaaagcgaacgagcagccggc 71386
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 48.1 bits (24), Expect = 0.020
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                               
Query: 134     cgccgcccgacccggcggccgcctccaccggc 165
               |||||||||  |||||||||||||||||||||
Sbjct: 1258846 cgccgcccgcgccggcggccgcctccaccggc 1258815
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>ref|XM_234518.3| PREDICTED: Rattus norvegicus serine (or cysteine) proteinase
           inhibitor, clade A (alpha-1 antiproteinase,
           antitrypsin), member 9 (predicted) (Serpina9_predicted),
           mRNA
          Length = 1365

 Score = 46.1 bits (23), Expect = 0.078
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 97  ctgtccactccaaaggcaaacga 119
           |||||||||||||||||||||||
Sbjct: 869 ctgtccactccaaaggcaaacga 847
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>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29
          Length = 295150

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 135    gccgcccgacccggcggccgcc 156
              ||||||||||||||||||||||
Sbjct: 168547 gccgcccgacccggcggccgcc 168568
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 147    ggcggccgcctccaccggcac 167
              |||||||||||||||||||||
Sbjct: 492086 ggcggccgcctccaccggcac 492106
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>ref|XM_511022.1| PREDICTED: Pan troglodytes similar to TNFRSF1A-associated via death
           domain isoform 1; tumor necrosis factor
           receptor-1-associated protein; TNFR1-associated death
           domain protein; tumor necrosis factor receptor type 1
           associated death domain protein (LOC454154), mRNA
          Length = 813

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 337 accaggcgctgcagcgtgtcgcgg 360
           |||||||||||||||||| |||||
Sbjct: 563 accaggcgctgcagcgtggcgcgg 540
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>ref|XM_474336.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 543

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 133 ccgccgcccgacccggcggccgcc 156
           ||||||||| ||||||||||||||
Sbjct: 146 ccgccgccccacccggcggccgcc 169
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>ref|XM_368047.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein
           (MG07951.4) partial mRNA
          Length = 528

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 154 gcctccaccggcaccggcac 173
           ||||||||||||||||||||
Sbjct: 36  gcctccaccggcaccggcac 17
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>ref|XM_580868.2| PREDICTED: Bos taurus similar to TNFRSF1A-associated via death
           domain isoform 1 (LOC504707), mRNA
          Length = 1515

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 337 accaggcgctgcagcgtgtcgcgg 360
           |||||||||||||||||| |||||
Sbjct: 913 accaggcgctgcagcgtggcgcgg 890
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>gb|BC004491.2| Homo sapiens TNFRSF1A-associated via death domain, transcript
           variant 1, mRNA (cDNA clone MGC:11078 IMAGE:3689007),
           complete cds
          Length = 1466

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 337 accaggcgctgcagcgtgtcgcgg 360
           |||||||||||||||||| |||||
Sbjct: 914 accaggcgctgcagcgtggcgcgg 891
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>gb|AY575851.1| Homo sapiens TNFRSF1A-associated via death domain (TRADD) gene,
            complete cds
          Length = 9002

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 337  accaggcgctgcagcgtgtcgcgg 360
            |||||||||||||||||| |||||
Sbjct: 7139 accaggcgctgcagcgtggcgcgg 7116
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>ref|XM_755900.1| Ustilago maydis 521 hypothetical protein (UM04846.1) partial mRNA
          Length = 3381

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 168  cggcacattggcgaatgcgt 187
            ||||||||||||||||||||
Sbjct: 2589 cggcacattggcgaatgcgt 2570
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>gb|BC112743.1| Bos taurus similar to TNFRSF1A-associated via death domain isoform
           1, mRNA (cDNA clone MGC:137615 IMAGE:8167967), complete
           cds
          Length = 1547

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 337 accaggcgctgcagcgtgtcgcgg 360
           |||||||||||||||||| |||||
Sbjct: 938 accaggcgctgcagcgtggcgcgg 915
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>emb|AL606668.2|OSJN00083 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064G10,
            complete sequence
          Length = 150206

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 133  ccgccgcccgacccggcggccgcc 156
            ||||||||| ||||||||||||||
Sbjct: 3041 ccgccgccccacccggcggccgcc 3064
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>gb|BT007794.1| Synthetic construct Homo sapiens TNFRSF1A-associated via death
           domain mRNA, partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 337 accaggcgctgcagcgtgtcgcgg 360
           |||||||||||||||||| |||||
Sbjct: 857 accaggcgctgcagcgtggcgcgg 834
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>gb|BT006934.1| Homo sapiens TNFRSF1A-associated via death domain mRNA, complete
           cds
          Length = 939

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 337 accaggcgctgcagcgtgtcgcgg 360
           |||||||||||||||||| |||||
Sbjct: 857 accaggcgctgcagcgtggcgcgg 834
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>dbj|AK090673.1| Homo sapiens cDNA FLJ33354 fis, clone BRACE2005124, highly similar to
            TUMOR NECROSIS FACTOR RECEPTOR TYPE 1 ASSOCIATED DEATH
            DOMAIN PROTEIN
          Length = 1833

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 337  accaggcgctgcagcgtgtcgcgg 360
            |||||||||||||||||| |||||
Sbjct: 1301 accaggcgctgcagcgtggcgcgg 1278
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>gb|AE012443.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 351
           of 460 of the complete genome
          Length = 10520

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 335 cgaccaggcgctgcagcgtg 354
           ||||||||||||||||||||
Sbjct: 192 cgaccaggcgctgcagcgtg 211
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>ref|NM_153425.1| Homo sapiens TNFRSF1A-associated via death domain (TRADD), transcript
            variant 2, mRNA
          Length = 1959

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 337  accaggcgctgcagcgtgtcgcgg 360
            |||||||||||||||||| |||||
Sbjct: 1407 accaggcgctgcagcgtggcgcgg 1384
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>ref|NM_003789.2| Homo sapiens TNFRSF1A-associated via death domain (TRADD),
           transcript variant 1, mRNA
          Length = 1482

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 337 accaggcgctgcagcgtgtcgcgg 360
           |||||||||||||||||| |||||
Sbjct: 930 accaggcgctgcagcgtggcgcgg 907
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>gb|AC156633.2| Mus musculus BAC clone RP24-421P3 from chromosome 9, complete sequence
          Length = 175422

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     ctgtccactccaaaggcaaa 116
              ||||||||||||||||||||
Sbjct: 104018 ctgtccactccaaaggcaaa 104037
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 335     cgaccaggcgctgcagcgtg 354
               ||||||||||||||||||||
Sbjct: 1159519 cgaccaggcgctgcagcgtg 1159538
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 177    ggcgaatgcgtcgccgtcggcgtagaac 204
              |||||| |||||||||||||||| ||||
Sbjct: 637971 ggcgaacgcgtcgccgtcggcgtcgaac 637944
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 133      ccgccgcccgacccggcggccgcc 156
                ||||||||| ||||||||||||||
Sbjct: 34548919 ccgccgccccacccggcggccgcc 34548942
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 146      cggcggccgcctccaccggcaccg 169
                ||||||||||||| ||||||||||
Sbjct: 14193580 cggcggccgcctctaccggcaccg 14193603
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>gb|AC040160.4|AC040160 Homo sapiens chromosome 16 clone CTC-277H1, complete sequence
          Length = 209574

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 337    accaggcgctgcagcgtgtcgcgg 360
              |||||||||||||||||| |||||
Sbjct: 184081 accaggcgctgcagcgtggcgcgg 184058
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>gb|AY227810.1| Emericella nidulans snfA gene, partial sequence
          Length = 5227

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 151 gccgcctccaccggcaccggcaca 174
           ||||||||||||||||||| ||||
Sbjct: 859 gccgcctccaccggcaccgtcaca 836
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>gb|AC074143.5| Homo sapiens chromosome 16 clone RP11-5A19, complete sequence
          Length = 152952

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 337    accaggcgctgcagcgtgtcgcgg 360
              |||||||||||||||||| |||||
Sbjct: 123367 accaggcgctgcagcgtggcgcgg 123390
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>gb|AY995114.1| Homo sapiens tumor necrosis factor receptor 1-associated death domain
            protein (TRADD) gene, complete cds
          Length = 12021

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 337  accaggcgctgcagcgtgtcgcgg 360
            |||||||||||||||||| |||||
Sbjct: 7568 accaggcgctgcagcgtggcgcgg 7545
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 279     cttctcgccgccctccaccg 298
               ||||||||||||||||||||
Sbjct: 7328710 cttctcgccgccctccaccg 7328729
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>dbj|AP006052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0067K15
          Length = 160162

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 146   cggcggccgcctccaccggcaccg 169
             ||||||||||||| ||||||||||
Sbjct: 78461 cggcggccgcctctaccggcaccg 78484
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>gb|AY892172.1| Synthetic construct Homo sapiens clone FLH014254.01L
           TNFRSF1A-associated via death domain (TRADD) mRNA,
           partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 337 accaggcgctgcagcgtgtcgcgg 360
           |||||||||||||||||| |||||
Sbjct: 857 accaggcgctgcagcgtggcgcgg 834
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>gb|AY889716.1| Synthetic construct Homo sapiens clone FLH014258.01X
           TNFRSF1A-associated via death domain (TRADD) mRNA,
           complete cds
          Length = 939

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 337 accaggcgctgcagcgtgtcgcgg 360
           |||||||||||||||||| |||||
Sbjct: 857 accaggcgctgcagcgtggcgcgg 834
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>gb|AY112603.1| Zea mays CL43526_1 mRNA sequence
          Length = 252

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 122 agccggcaccaccgccgcccgacc 145
           |||||||||||||| |||||||||
Sbjct: 185 agccggcaccaccgtcgcccgacc 162
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>emb|AL732350.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0101F08, complete
            sequence
          Length = 63897

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 133  ccgccgcccgacccggcggccgcc 156
            ||||||||| ||||||||||||||
Sbjct: 2493 ccgccgccccacccggcggccgcc 2516
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>emb|AL732351.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0103C06, complete
             sequence
          Length = 104146

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 133   ccgccgcccgacccggcggccgcc 156
             ||||||||| ||||||||||||||
Sbjct: 84800 ccgccgccccacccggcggccgcc 84823
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>emb|AJ311616.1|HSA311616 Homo sapiens partial TRADD gene for TNFRSF1A-associated via death
           domain, exon 5
          Length = 579

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 337 accaggcgctgcagcgtgtcgcgg 360
           |||||||||||||||||| |||||
Sbjct: 291 accaggcgctgcagcgtggcgcgg 268
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>gb|L41690.1|HUMTRADD Homo sapiens TNF receptor-1 associated protein (TRADD) mRNA, 3' end
           of cds
          Length = 1435

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 337 accaggcgctgcagcgtgtcgcgg 360
           |||||||||||||||||| |||||
Sbjct: 905 accaggcgctgcagcgtggcgcgg 882


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,030,008
Number of Sequences: 3902068
Number of extensions: 2030008
Number of successful extensions: 49109
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48262
Number of HSP's gapped (non-prelim): 847
length of query: 363
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 341
effective length of database: 17,147,199,772
effective search space: 5847195122252
effective search space used: 5847195122252
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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