ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P2RY5_MOUSE (Q8BMC0) P2Y purinoceptor 5 (P2Y5) (Purinergic recep... 31 0.91
2FBN1_BOVIN (P98133) Fibrillin-1 precursor (MP340) 30 1.6
3FBN1_MOUSE (Q61554) Fibrillin-1 precursor 29 2.6
4P2RY5_CHICK (P32250) P2Y purinoceptor 5 (P2Y5) (Purinergic recep... 29 2.6
5FBN1_HUMAN (P35555) Fibrillin-1 precursor 29 3.5
6S23A2_MOUSE (Q9EPR4) Solute carrier family 23 member 2 (Sodium-d... 29 3.5
7P2RY5_HUMAN (P43657) P2Y purinoceptor 5 (P2Y5) (Purinergic recep... 28 4.5
8FBN2_MOUSE (Q61555) Fibrillin-2 precursor 28 4.5
9FBN2_HUMAN (P35556) Fibrillin-2 precursor 28 4.5
10FBN1_PIG (Q9TV36) Fibrillin-1 precursor 28 5.9
11FBN3_HUMAN (Q75N90) Fibrillin-3 precursor 28 5.9

>P2RY5_MOUSE (Q8BMC0) P2Y purinoceptor 5 (P2Y5) (Purinergic receptor 5)|
          Length = 344

 Score = 30.8 bits (68), Expect = 0.91
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
 Frame = +2

Query: 104 PLVQNITHADMIINTINPKFTCKECPPGRAR------THTLCFCFC 223
           PL+ N+T + M++ T+N   T       + +       H + FCFC
Sbjct: 196 PLILNVTCSSMVLRTLNKPVTLSRSKMNKTKVLKMIFVHLVIFCFC 241



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>FBN1_BOVIN (P98133) Fibrillin-1 precursor (MP340)|
          Length = 2871

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 134  MIINTINPKFTCKECPPGRARTHTLC 211
            + +NTI   FTCK CPPG  + HT C
Sbjct: 2499 LCVNTIG-SFTCK-CPPGFTQHHTAC 2522



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>FBN1_MOUSE (Q61554) Fibrillin-1 precursor|
          Length = 2871

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 134  MIINTINPKFTCKECPPGRARTHTLC 211
            + +NTI   FTCK CPPG  + HT C
Sbjct: 2499 LCVNTIGG-FTCK-CPPGFTQHHTAC 2522



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>P2RY5_CHICK (P32250) P2Y purinoceptor 5 (P2Y5) (Purinergic receptor 5) (6H1)|
          Length = 308

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
 Frame = +2

Query: 104 PLVQNITHADMIINTINPKFTCKECPPGRAR------THTLCFCFC 223
           PL+ N+T + M++ T+N   T       + +       H + FCFC
Sbjct: 193 PLILNVTCSTMVLRTLNKPLTLSRNKLSKKKVLKMIFVHLVIFCFC 238



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>FBN1_HUMAN (P35555) Fibrillin-1 precursor|
          Length = 2871

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 134  MIINTINPKFTCKECPPGRARTHTLC 211
            + +NTI   FTCK CPPG  + HT C
Sbjct: 2499 LCVNTIGG-FTCK-CPPGFTQHHTSC 2522



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>S23A2_MOUSE (Q9EPR4) Solute carrier family 23 member 2 (Sodium-dependent|
           vitamin C transporter 2) (mSVCT2) (Na(+)/L-ascorbic acid
           transporter 2) (Yolk sac permease-like molecule 2)
          Length = 647

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 17  VEMNRQFTTNTLAYSFAHAILLCIYRPPNPLVQNITHADMIINTI 151
           +++N       L +S    ++L  Y   NPLV  IT  D I+N +
Sbjct: 506 IDLNSSRNLFVLGFSIFFGLVLPSYLRQNPLVTGITGIDQILNVL 550



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>P2RY5_HUMAN (P43657) P2Y purinoceptor 5 (P2Y5) (Purinergic receptor 5) (RB|
           intron encoded G-protein coupled receptor)
          Length = 344

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
 Frame = +2

Query: 104 PLVQNITHADMIINTINPKFTCKECPPGRAR------THTLCFCFC 223
           PL+ N+T + M++ T+    T       + +       H + FCFC
Sbjct: 196 PLILNVTCSSMVLKTLTKPVTLSRSKINKTKVLKMIFVHLIIFCFC 241



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>FBN2_MOUSE (Q61555) Fibrillin-2 precursor|
          Length = 2907

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 134  MIINTINPKFTCKECPPGRARTHTLC 211
            + +NT+   FTCK CPPG  + HT C
Sbjct: 2539 LCVNTLGG-FTCK-CPPGFTQHHTAC 2562



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>FBN2_HUMAN (P35556) Fibrillin-2 precursor|
          Length = 2911

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 134  MIINTINPKFTCKECPPGRARTHTLC 211
            + +NT+   FTCK CPPG  + HT C
Sbjct: 2545 LCVNTLGG-FTCK-CPPGFTQHHTAC 2568



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>FBN1_PIG (Q9TV36) Fibrillin-1 precursor|
          Length = 2871

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 134  MIINTINPKFTCKECPPGRARTHTLC 211
            + +NTI   F CK CPPG  + HT C
Sbjct: 2499 LCVNTIG-SFACK-CPPGFTQHHTAC 2522



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>FBN3_HUMAN (Q75N90) Fibrillin-3 precursor|
          Length = 2809

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 134  MIINTINPKFTCKECPPGRARTHTLCF 214
            + +NT+   FTC+ CPPG  + H  CF
Sbjct: 2460 LCVNTVGA-FTCR-CPPGFTQHHQACF 2484


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,321,047
Number of Sequences: 219361
Number of extensions: 684740
Number of successful extensions: 1886
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1886
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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