ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IPYR2_HUMAN (Q9H2U2) Inorganic pyrophosphatase 2, mitochondrial ... 28 4.0
2INSRR_RAT (Q64716) Insulin receptor-related protein precursor (E... 28 5.3
3AMPM1_SCHPO (O59730) Probable methionine aminopeptidase 1 (EC 3.... 28 5.3
4IGF1R_RAT (P24062) Insulin-like growth factor 1 receptor precurs... 28 5.3
5IGF1R_MOUSE (Q60751) Insulin-like growth factor 1 receptor precu... 28 5.3
6ITIH2_HUMAN (P19823) Inter-alpha-trypsin inhibitor heavy chain H... 28 6.9
7FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor 27 9.0

>IPYR2_HUMAN (Q9H2U2) Inorganic pyrophosphatase 2, mitochondrial precursor (EC|
           3.6.1.1) (PPase 2) (Pyrophosphatase SID6-306)
          Length = 334

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 152 NCEGKN*PIRPLCLGQNLLVCNDAISNCIIGLLLL 48
           NC G N PI    +G  +L C + I   I+G+L L
Sbjct: 160 NCFGDNDPIDVCEIGSKILSCGEVIHVKILGILAL 194



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>INSRR_RAT (Q64716) Insulin receptor-related protein precursor (EC 2.7.10.1)|
           (IRR) (IR-related receptor) (Fragments)
          Length = 581

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = -3

Query: 350 HVTCSRHCNDHADLWSCPTCAEHM*QGVMRPSCKIGAY 237
           H  C   C+   D  +C  C     QGV  P+C  G Y
Sbjct: 230 HSECLGGCSQPEDPRACVACRHLYFQGVCLPACPPGTY 267



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>AMPM1_SCHPO (O59730) Probable methionine aminopeptidase 1 (EC 3.4.11.18) (MetAP|
           1) (MAP 1) (Peptidase M 1)
          Length = 379

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 350 HVTCSRHCNDHADLWSCPTC 291
           H+ C   CN+ AD   CP C
Sbjct: 8   HICCGIDCNNEADRLQCPKC 27



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>IGF1R_RAT (P24062) Insulin-like growth factor 1 receptor precursor (EC|
           2.7.10.1) (Insulin-like growth factor I receptor) (IGF-I
           receptor) [Contains: Insulin-like growth factor 1
           receptor alpha chain; Insulin-like growth factor 1
           receptor beta chain]
          Length = 1370

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 350 HVTCSRHCNDHADLWSCPTCAEHM*QGVMRPSCKIGAY 237
           H  C   C+   D  +C  C  +  +GV  P+C  G Y
Sbjct: 232 HPECLGSCHTPDDNTTCVACRHYYYKGVCVPACPPGTY 269



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>IGF1R_MOUSE (Q60751) Insulin-like growth factor 1 receptor precursor (EC|
           2.7.10.1) (Insulin-like growth factor I receptor) (IGF-I
           receptor) [Contains: Insulin-like growth factor 1
           receptor alpha chain; Insulin-like growth factor 1
           receptor beta chain]
          Length = 1373

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = -3

Query: 350 HVTCSRHCNDHADLWSCPTCAEHM*QGVMRPSCKIGAY 237
           H  C   C+   D  +C  C  +  +GV  P+C  G Y
Sbjct: 232 HPECLGSCHTPDDNTTCVACRHYYYKGVCVPACPPGTY 269



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>ITIH2_HUMAN (P19823) Inter-alpha-trypsin inhibitor heavy chain H2 precursor|
           (ITI heavy chain H2) (Inter-alpha-inhibitor heavy chain
           2) (Inter-alpha-trypsin inhibitor complex component II)
           (Serum-derived hyaluronan-associated protein) (SHAP)
          Length = 946

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 94  TNRFCPKQRGLIGQF 138
           TN+F PK  GLIGQF
Sbjct: 849 TNKFSPKAHGLIGQF 863



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>FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor|
          Length = 4010

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
 Frame = -3

Query: 341  CSRHCNDHADLWSCPTCAEHM*QGVMRPSCKIGAYIGPHIFMCCSYLHCFFVY*LDLCFA 162
            C+RHC       SC +C +        PS  +       +F  C Y  C   Y LD+   
Sbjct: 908  CNRHCRSCDSQGSCTSCRD--------PSKVL-------LFGECQYESCTPQYYLDIATK 952

Query: 161  AIKNCEGK----N*PIRPLCL 111
              K C+        P+R  CL
Sbjct: 953  TCKECDWSCNACTGPLRTDCL 973


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,673,207
Number of Sequences: 219361
Number of extensions: 1081871
Number of successful extensions: 2139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2138
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 1365190992
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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