ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart61f05 |
|---|---|
| Clone Library Name | barley_pub |
>LPXK_BORPE (Q7VVB2) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 347 Score = 30.8 bits (68), Expect = 0.82 Identities = 21/64 (32%), Positives = 28/64 (43%) Frame = -3 Query: 321 ARTEELPSSREELAAASLPFLPVKCQRVLVCM*DLRRCAQLEQRQCWR*NIGKYPAFLDP 142 A T LP + A A PF + +LV D +CA L+ + W +G DP Sbjct: 278 AHTLALP---DHYAYAQSPFTALDADLILVTAKDAIKCAALDDPRLWAVQVG--TRLSDP 332 Query: 141 DTGD 130 D GD Sbjct: 333 DFGD 336
>LPXK_BORPA (Q7W7F7) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 347 Score = 30.8 bits (68), Expect = 0.82 Identities = 21/64 (32%), Positives = 28/64 (43%) Frame = -3 Query: 321 ARTEELPSSREELAAASLPFLPVKCQRVLVCM*DLRRCAQLEQRQCWR*NIGKYPAFLDP 142 A T LP + A A PF + +LV D +CA L+ + W +G DP Sbjct: 278 AHTLALP---DHYAYAQSPFTALDADLILVTAKDAIKCAALDDPRLWAVQVG--TRLSDP 332 Query: 141 DTGD 130 D GD Sbjct: 333 DFGD 336
>LPXK_BORBR (Q7WKU5) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A| 4'-kinase) Length = 347 Score = 30.8 bits (68), Expect = 0.82 Identities = 21/64 (32%), Positives = 28/64 (43%) Frame = -3 Query: 321 ARTEELPSSREELAAASLPFLPVKCQRVLVCM*DLRRCAQLEQRQCWR*NIGKYPAFLDP 142 A T LP + A A PF + +LV D +CA L+ + W +G DP Sbjct: 278 AHTLALP---DHYAYAQSPFTALDADLILVTAKDAIKCAALDDPRLWAVQVG--TRLSDP 332 Query: 141 DTGD 130 D GD Sbjct: 333 DFGD 336
>KP6T_UMV6 (P16948) KP6 killer toxin precursor (Killer protein 6) [Contains:| KP6 killer toxin alpha subunit (VP10); KP6 killer toxin beta subunit (VP12.5)] Length = 219 Score = 30.8 bits (68), Expect = 0.82 Identities = 15/49 (30%), Positives = 26/49 (53%) Frame = +3 Query: 78 TDRMRSRFQSNISST*HDPQCRGLGKQGIYLYSTSSTGAAQAVHNDGDP 224 +D +R++F S+ SS ++ CR L K+ I +T + +H D P Sbjct: 81 SDDLRNQFYSHCSSLNNNMSCRSLSKRTIQDSATDTVDLGAELHRDDPP 129
>EPHB4_HUMAN (P54760) Ephrin type-B receptor 4 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor HTK) Length = 987 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = -2 Query: 319 EDGRIAEQP*RACSCQPSLPACQVST 242 EDG+ AEQP CSC P A + +T Sbjct: 241 EDGQWAEQPVTGCSCAPGFEAAEGNT 266
>CASL_HUMAN (Q14511) Enhancer of filamentation 1 (HEF1) (CRK-associated| substrate-related protein) (CAS-L) (CasL) (p105) (Protein NEDD9) (NY-REN-12 antigen) Length = 834 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +3 Query: 168 LYSTSSTGAAQAVHNDGDPTYILELVDT*QAGREGWQLQALHGCSAILPSS 320 LY A + GD IL +++ G EGW L +LHG I+P + Sbjct: 11 LYDNVPECAEELAFRKGD---ILTVIEQNTGGLEGWWLCSLHGRQGIVPGN 58
>CASL_MOUSE (O35177) Enhancer of filamentation 1 (MEF1) (CRK-associated| substrate-related protein) (CAS-L) (p105) (Protein NEDD9) (Neural precursor cell expressed developmentally down-regulated protein 9) Length = 833 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/51 (33%), Positives = 24/51 (47%) Frame = +3 Query: 168 LYSTSSTGAAQAVHNDGDPTYILELVDT*QAGREGWQLQALHGCSAILPSS 320 LY A + GD IL +++ G EGW L +LHG I+P + Sbjct: 11 LYDNVPECAEELAFRKGD---ILTVIEQNTGGLEGWWLCSLHGRQGIVPGN 58
>VWF_MOUSE (Q8CIZ8) Von Willebrand factor precursor (vWF) [Contains: Von| Willebrand antigen II] Length = 2813 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/78 (25%), Positives = 25/78 (32%), Gaps = 4/78 (5%) Frame = -3 Query: 258 PVKCQRVLVCM*DLRRCAQLEQRQCWR*NIGKYPAFLDPDTGDHVMC----C*CLTGNET 91 P +C+ C C ++ C P P C C C N T Sbjct: 2351 PGECRPTFTCDCRKEECKRVSPPSC--------PPHRTPTLRKTQCCDEYECACSCVNST 2402 Query: 90 ASCPLGTFCCANSFSCQC 37 SCPLG A + C C Sbjct: 2403 LSCPLGYLASATTNDCGC 2420
>LRC15_MOUSE (Q80X72) Leucine-rich repeat-containing protein 15 precursor| Length = 579 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/52 (28%), Positives = 22/52 (42%) Frame = -2 Query: 265 LPACQVSTSSSMYVGSPSLCTA*AAPVLEVEYR*IPCFPRPRHWGSCHVLLM 110 L +CQ + Y G PS CT A +E I P P W + + ++ Sbjct: 10 LVSCQAWAAGLAYYGCPSECTCSRASQVECTGAQIVAMPSPLPWNAMSLQIL 61
>FER2_CHLLI (P00206) Ferredoxin-2 (Ferredoxin II) (FdII)| Length = 61 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/36 (30%), Positives = 18/36 (50%) Frame = -2 Query: 310 RIAEQP*RACSCQPSLPACQVSTSSSMYVGSPSLCT 203 RI E+ +C+P P +S +Y+ S+CT Sbjct: 3 RITEECTYCAACEPECPVNAISAGDEIYIVDESVCT 38
>RELN_MOUSE (Q60841) Reelin precursor (EC 3.4.21.-) (Reeler protein)| Length = 3461 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -2 Query: 277 CQPSLPACQVSTSSSMYVGS 218 C PS+P+CQ TS+S+Y S Sbjct: 968 CLPSMPSCQEFTSASIYHAS 987
>RELN_HUMAN (P78509) Reelin precursor (EC 3.4.21.-)| Length = 3460 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -2 Query: 277 CQPSLPACQVSTSSSMYVGS 218 C PS+P+CQ TS+S+Y S Sbjct: 967 CLPSMPSCQEFTSASIYHAS 986
>RELN_RAT (P58751) Reelin precursor (EC 3.4.21.-)| Length = 3462 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = -2 Query: 277 CQPSLPACQVSTSSSMYVGS 218 C PS+P+CQ TS+S+Y S Sbjct: 969 CLPSMPSCQEFTSASIYHAS 988
>VWF_CANFA (Q28295) Von Willebrand factor precursor (vWF)| Length = 2813 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/27 (44%), Positives = 13/27 (48%) Frame = -3 Query: 117 C*CLTGNETASCPLGTFCCANSFSCQC 37 C C N T SCPLG A + C C Sbjct: 2394 CACNCVNSTVSCPLGYLASAVTNDCGC 2420
>PCDGM_HUMAN (Q9Y5F6) Protocadherin gamma C5 precursor (PCDH-gamma-C5)| Length = 944 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = -3 Query: 147 DPDTGDHVMCC*CLTGNETASCPLGTFCCAN 55 DPDTGD+ + GN+ P +F N Sbjct: 480 DPDTGDNARLTYSIVGNQVQGAPASSFVYVN 510
>RELN_CHICK (O93574) Reelin (EC 3.4.21.-) (Fragment)| Length = 3209 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = -2 Query: 277 CQPSLPACQVSTSSSMY 227 C PS+P+CQ TS+S+Y Sbjct: 715 CLPSMPSCQEFTSASIY 731
>FER_CHRVI (P00208) Ferredoxin| Length = 82 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = -2 Query: 277 CQPSLPACQVSTSSSMYVGSPSLCT 203 C+P P +S YV PSLCT Sbjct: 14 CEPECPNGAISQGDETYVIEPSLCT 38
>FER3_CHLTE (Q8KBP9) Ferredoxin-3 (Ferredoxin III) (FdIII)| Length = 61 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = -2 Query: 310 RIAEQP*RACSCQPSLPACQVSTSSSMYVGSPSLCT 203 +I E+ +C+P P +S S +YV S CT Sbjct: 3 KITEECTFCAACEPECPVNAISAGSDIYVIDESACT 38
>LRRN1_MOUSE (Q61809) Leucine-rich repeats neuronal protein 1 precursor| (Neuronal leucine-rich repeat protein 1) (NLRR-1) Length = 716 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = +1 Query: 25 LLIVTLTAETISTTECPQRTGC 90 LLI +LT +I T+ECPQ C Sbjct: 17 LLITSLTESSILTSECPQLCVC 38
>PCDGM_PANTR (Q5DRA2) Protocadherin gamma C5 precursor (PCDH-gamma-C5)| Length = 944 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/31 (35%), Positives = 15/31 (48%) Frame = -3 Query: 147 DPDTGDHVMCC*CLTGNETASCPLGTFCCAN 55 DPDTGD+ + GN+ P +F N Sbjct: 480 DPDTGDNARLTYSVVGNQVQGAPASSFVYVN 510 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,805,292 Number of Sequences: 219361 Number of extensions: 1027914 Number of successful extensions: 2432 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2352 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2431 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
