ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart61f02 |
|---|---|
| Clone Library Name | barley_pub |
>GCSPB_SULTO (Q972C0) Probable glycine dehydrogenase [decarboxylating] subunit 2| (EC 1.4.4.2) (Glycine decarboxylase subunit 2) (Glycine cleavage system P-protein subunit 2) Length = 505 Score = 30.4 bits (67), Expect = 1.1 Identities = 17/63 (26%), Positives = 28/63 (44%) Frame = +2 Query: 140 SFHQKYWNENAAFAKPGRDTLLIRTPHGEVEVAAGSADAEEQPTERERLLHEIEHQQVVL 319 S+HQ WNE F G+ + + P E S + E+ +E L E+ +V+ Sbjct: 2 SWHQAVWNEPLIFEYKGKGRIGFKIPEEEELKKEISINIPEKLRRKEIDLPELSELEVIR 61 Query: 320 HLV 328 H + Sbjct: 62 HFI 64
>METK_POPDE (P47916) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 395 Score = 29.6 bits (65), Expect = 1.9 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = +2 Query: 152 KYWNENAAFAKPGRDTLLIRTPHGEV----EVAAGSADAEEQPTERERLLHEIEHQQVVL 319 +Y+NEN A T+LI T H E E+AA + +P E+ L E + + Sbjct: 176 EYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDE----KTIF 231 Query: 320 HLVP 331 HL P Sbjct: 232 HLNP 235
>METK_MESCR (P93254) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 392 Score = 29.6 bits (65), Expect = 1.9 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = +2 Query: 152 KYWNENAAFAKPGRDTLLIRTPHGEV----EVAAGSADAEEQPTERERLLHEIEHQQVVL 319 +Y+NEN A T+LI T H E E+AA + +P E+ L E + + Sbjct: 175 EYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDE----KTIF 230 Query: 320 HLVP 331 HL P Sbjct: 231 HLNP 234
>C11BA_BACTJ (Q45730) Pesticidal crystal protein cry11Ba (Insecticidal| delta-endotoxin CryXIB(a)) (Crystaline entomocidal protoxin) (81 kDa crystal protein) Length = 724 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = -2 Query: 340 ILGGHQMENNLLMFDLVKETFAFSGLLLGIRTTCSNFNFTMGSSY*KSVTSWFCECSVFV 161 +LGG +E N D + ++F F LGI T+ +N F++ S + W+ + V Sbjct: 576 LLGGIPVEGNSGWIDYITDSFTFDD--LGITTSSTNAFFSIDSDGVNASQQWYLSKLILV 633
>METL_DIACA (P24260) S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine| adenosyltransferase 2) (AdoMet synthetase 2) Length = 396 Score = 28.9 bits (63), Expect = 3.3 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Frame = +2 Query: 152 KYWNENAAFAKPGRDTLLIRTPHGEV----EVAAGSADAEEQPTERERLLHEIEHQQVVL 319 +Y+NEN A T+LI T H E E+AA + +P E+ L E + Sbjct: 179 EYYNENGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDE----NTIF 234 Query: 320 HLVP 331 HL P Sbjct: 235 HLNP 238
>C11BB_BACTV (Q9ZIU5) Pesticidal crystal protein cry11Bb (Insecticidal| delta-endotoxin CryXIB(b)) (Crystaline entomocidal protoxin) (84 kDa crystal protein) Length = 750 Score = 28.9 bits (63), Expect = 3.3 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = -2 Query: 340 ILGGHQMENNLLMFDLVKETFAFSGLLLGIRTTCSNFNFTMGSSY*KSVTSWFCECSVFV 161 +LGG +E N D + ++F F+ LGI T +N F++ S + W+ + V Sbjct: 576 LLGGIPVEGNSGWVDYITDSFTFND--LGITTASTNAFFSIDSDGVNASQQWYLSKLILV 633
>METL_CATRO (Q96552) S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine| adenosyltransferase 2) (AdoMet synthetase 2) Length = 393 Score = 28.5 bits (62), Expect = 4.3 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = +2 Query: 152 KYWNENAAFAKPGRDTLLIRTPHGEV----EVAAGSADAEEQPTERERLLHEIEHQQVVL 319 +Y+N+N A T+LI T H E E+AA + +P E+ L E + + Sbjct: 175 EYYNDNGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVVPEKYLDE----KTIF 230 Query: 320 HLVP 331 HL P Sbjct: 231 HLNP 234
>RRP3_CANGA (Q6FNK8) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-)| Length = 493 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -2 Query: 292 VKETFAFSGLLLGIRTTC 239 +KETF G L+G+RTTC Sbjct: 157 IKETFDSLGSLMGVRTTC 174
>RRP3_ASHGO (Q75EW9) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-)| Length = 487 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -2 Query: 292 VKETFAFSGLLLGIRTTC 239 +KETF G L+G+RTTC Sbjct: 150 IKETFDSLGSLMGVRTTC 167
>HDAC7_MOUSE (Q8C2B3) Histone deacetylase 7a (HD7a)| Length = 938 Score = 27.7 bits (60), Expect = 7.4 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 8/62 (12%) Frame = +2 Query: 116 IRSTATVHSFHQKYWNENAAFAKPGRDTLLIRTPHGEVEVAAGSA--------DAEEQPT 271 IRS V H+KYW A D+ L R P + EV A +A AE++P+ Sbjct: 868 IRSLEAVVRVHRKYWGCMQRLAS-CPDSWLPRVPGADAEVEAVTALASLSVGILAEDRPS 926 Query: 272 ER 277 ER Sbjct: 927 ER 928
>METM_ACTCH (P50303) S-adenosylmethionine synthetase 3 (EC 2.5.1.6) (Methionine| adenosyltransferase 3) (AdoMet synthetase 3) (Fragment) Length = 360 Score = 27.7 bits (60), Expect = 7.4 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = +2 Query: 152 KYWNENAAFAKPGRDTLLIRTPHGEV----EVAAGSADAEEQPTERERLLHEIEHQQVVL 319 +Y+NEN A T+LI T H E ++AA + +P E+ L E + + Sbjct: 142 EYYNENGAMVPIRVHTVLISTQHDETVTNDKIAADLKEHVIRPVIPEKYLDE----KTIF 197 Query: 320 HLVP 331 HL P Sbjct: 198 HLNP 201
>PTN1_RAT (P20417) Tyrosine-protein phosphatase non-receptor type 1 (EC| 3.1.3.48) (Protein-tyrosine phosphatase 1B) (PTP-1B) Length = 432 Score = 27.7 bits (60), Expect = 7.4 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = -1 Query: 89 YSSHVWVLRESCDTSYVLCNENSQ 18 +S+H WV ESC+ +L E S+ Sbjct: 328 FSNHQWVSEESCEDEDILAREESR 351
>Y138_METJA (Q57602) Hypothetical protein MJ0138| Length = 482 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = -2 Query: 340 ILGGHQMENNLLMFDLVKETFAFSGLLLGIRTTCSNF 230 I GG +E+ L DL KE F+G ++GI CS F Sbjct: 42 IPGGSLIESKSLNDDLKKEIINFNGYIIGI---CSGF 75
>7SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Contains: Basic| 7S globulin high-kDa subunit; Basic 7S globulin low-kDa subunit] Length = 427 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 Query: 337 LGGHQMENNLLMFDLVKETFAFS 269 LG Q+E NL++FDL + FS Sbjct: 385 LGARQLEENLVVFDLARSRVGFS 407
>TTLL5_PONPY (Q5R978) Tubulin--tyrosine ligase-like protein 5| Length = 1299 Score = 27.3 bits (59), Expect = 9.6 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +2 Query: 77 HVSYISIQFYSRHIRSTATVHSFHQ 151 H+SY ++ SR +RS T H FH+ Sbjct: 64 HLSYKIVRTDSRLVRSILTAHGFHE 88
>TTLL5_CERAE (Q6EEF3) Tubulin--tyrosine ligase-like protein 5 (SRC1 and| TIF2-associated modulatory protein) Length = 1295 Score = 27.3 bits (59), Expect = 9.6 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +2 Query: 77 HVSYISIQFYSRHIRSTATVHSFHQ 151 H+SY ++ SR +RS T H FH+ Sbjct: 60 HLSYKIVRTDSRLVRSILTAHGFHE 84
>TTLL5_HUMAN (Q6EMB2) Tubulin--tyrosine ligase-like protein 5 (SRC1 and| TIF2-associated modulatory protein) Length = 1277 Score = 27.3 bits (59), Expect = 9.6 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +2 Query: 77 HVSYISIQFYSRHIRSTATVHSFHQ 151 H+SY ++ SR +RS T H FH+ Sbjct: 60 HLSYKIVRTDSRLVRSILTAHGFHE 84
>METK_CATRO (Q96551) S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine| adenosyltransferase 1) (AdoMet synthetase 1) Length = 393 Score = 27.3 bits (59), Expect = 9.6 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = +2 Query: 152 KYWNENAAFAKPGRDTLLIRTPHGEV----EVAAGSADAEEQPTERERLLHEIEHQQVVL 319 +Y+NEN A T++I T H E ++AA + +P E+ L E + + Sbjct: 175 EYYNENGAMVPVRVHTVVISTQHDETVTNDQIAADLKEHVIKPVIPEKYLDE----RTIF 230 Query: 320 HLVP 331 HL P Sbjct: 231 HLNP 234
>BAI3_MOUSE (Q80ZF8) Brain-specific angiogenesis inhibitor 3 precursor| Length = 1522 Score = 27.3 bits (59), Expect = 9.6 Identities = 13/18 (72%), Positives = 14/18 (77%) Frame = +3 Query: 105 ILVTYAALQRYIRSTRSI 158 + V YAAL RYIRS RSI Sbjct: 895 LAVVYAALWRYIRSERSI 912
>BAI3_HUMAN (O60242) Brain-specific angiogenesis inhibitor 3 precursor| Length = 1522 Score = 27.3 bits (59), Expect = 9.6 Identities = 13/18 (72%), Positives = 14/18 (77%) Frame = +3 Query: 105 ILVTYAALQRYIRSTRSI 158 + V YAAL RYIRS RSI Sbjct: 895 LAVVYAALWRYIRSERSI 912
>INV1_MAIZE (P49175) Beta-fructofuranosidase 1 precursor (EC 3.2.1.26) (Sucrose| 1) (Invertase 1) Length = 670 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = +2 Query: 44 RTCRKTPLIPTHVSYISIQFYSRHIRSTATVHSFHQKYWNENAAFAKP 187 RTC + + PT Y S + + + + A V + K W N+A+ +P Sbjct: 615 RTCITSRVYPTRAIYDSARVFLFNNATHAHVKAKSVKIWQLNSAYIRP 662
>Y2346_MYCBO (P64996) Hypothetical protein Mb2346c| Length = 292 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 7/52 (13%) Frame = -2 Query: 163 VPILLVERMYRCSAAYVTRIKL-------DTDIAHMCGY*GSLATRPMCCVT 29 VP+ + R YRC +TR+ D+ CG+ S PM +T Sbjct: 135 VPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVPMRVIT 186
>Y2319_MYCTU (P64995) Hypothetical protein Rv2319c/MT2382| Length = 292 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 7/52 (13%) Frame = -2 Query: 163 VPILLVERMYRCSAAYVTRIKL-------DTDIAHMCGY*GSLATRPMCCVT 29 VP+ + R YRC +TR+ D+ CG+ S PM +T Sbjct: 135 VPVAITPRRYRCYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVPMRVIT 186
>TTLL5_MOUSE (Q8CHB8) Tubulin--tyrosine ligase-like protein 5| Length = 1328 Score = 27.3 bits (59), Expect = 9.6 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +2 Query: 77 HVSYISIQFYSRHIRSTATVHSFHQ 151 H+SY ++ SR +RS T H FH+ Sbjct: 64 HLSYKIVRTDSRLVRSILTAHGFHE 88 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,833,125 Number of Sequences: 219361 Number of extensions: 891883 Number of successful extensions: 2692 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2635 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2692 length of database: 80,573,946 effective HSP length: 89 effective length of database: 61,050,817 effective search space used: 1465219608 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
