ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190069.1| Oryza sativa (japonica cultivar-group), predic... 48 0.019
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.019
3dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.019
4dbj|AK108620.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.019
5ref|NM_190071.1| Oryza sativa (japonica cultivar-group), predic... 46 0.073
6dbj|AK111477.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.29
7dbj|AK063356.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.29
8gb|AC163894.2| Glomus intraradices clone JGIATSX-9F17, complete ... 42 1.1
9ref|XM_629011.1| Dictyostelium discoideum hypothetical protein (... 40 4.5
10ref|XM_629010.1| Dictyostelium discoideum hypothetical protein (... 40 4.5
11gb|DQ219479.1| wheat putative xylanase inhibitor mRNA, partial cds 40 4.5
12ref|XM_726409.1| Aspergillus fumigatus Af293 hypothetical protei... 40 4.5
13ref|XM_446000.1| Candida glabrata CBS138, CAGL0F00605g partial mRNA 40 4.5
14gb|AC110237.8| Mus musculus chromosome 5, clone RP23-104B24, com... 40 4.5
15emb|AL356113.8| Human DNA sequence from clone RP11-429A24 on chr... 40 4.5
16ref|XM_968893.1| PREDICTED: Tribolium castaneum similar to CG136... 40 4.5
17emb|CR380952.1| Candida glabrata strain CBS138 chromosome F comp... 40 4.5
18gb|AC105350.2| Drosophila melanogaster X BAC RP98-30C13 (Roswell... 40 4.5
19ref|NM_132328.1| Drosophila melanogaster CG17446-RA (CG17446), mRNA 40 4.5
20dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
21emb|BX831091.1|CNS0A0PM Arabidopsis thaliana Full-length cDNA Co... 40 4.5
22dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
23gb|AE003446.4| Drosophila melanogaster chromosome X, section 30 ... 40 4.5
24gb|AC115725.9| Mus musculus chromosome 5, clone RP23-21A18, comp... 40 4.5 
>ref|NM_190069.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1269

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 297  tcgaacatcagcaggttgttctccatctggtgccccccga 336
            ||||||| || |||||||| ||||||||||||||| ||||
Sbjct: 1181 tcgaacaccaccaggttgtgctccatctggtgcccgccga 1142



 Score = 46.1 bits (23), Expect = 0.073
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 222  gtgaagttgaagttgctgcaggt 244
            |||||||||||||||||||||||
Sbjct: 1256 gtgaagttgaagttgctgcaggt 1234
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 297      tcgaacatcagcaggttgttctccatctggtgccccccga 336
                ||||||| || |||||||| ||||||||||||||| ||||
Sbjct: 41126162 tcgaacaccaccaggttgtgctccatctggtgcccgccga 41126201



 Score = 46.1 bits (23), Expect = 0.073
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 222      gtgaagttgaagttgctgcaggt 244
                |||||||||||||||||||||||
Sbjct: 41131727 gtgaagttgaagttgctgcaggt 41131749



 Score = 46.1 bits (23), Expect = 0.073
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 222      gtgaagttgaagttgctgcaggt 244
                |||||||||||||||||||||||
Sbjct: 41126087 gtgaagttgaagttgctgcaggt 41126109



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 297      tcgaacatcagcaggttgttctccatctgg 326
                ||||||| || |||||||||||||||||||
Sbjct: 41131802 tcgaacaccaccaggttgttctccatctgg 41131831
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>dbj|AP003269.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0504E02
          Length = 137468

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 297   tcgaacatcagcaggttgttctccatctggtgccccccga 336
             ||||||| || |||||||| ||||||||||||||| ||||
Sbjct: 23217 tcgaacaccaccaggttgtgctccatctggtgcccgccga 23256



 Score = 46.1 bits (23), Expect = 0.073
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 222   gtgaagttgaagttgctgcaggt 244
             |||||||||||||||||||||||
Sbjct: 28782 gtgaagttgaagttgctgcaggt 28804



 Score = 46.1 bits (23), Expect = 0.073
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 222   gtgaagttgaagttgctgcaggt 244
             |||||||||||||||||||||||
Sbjct: 23142 gtgaagttgaagttgctgcaggt 23164



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 297   tcgaacatcagcaggttgttctccatctgg 326
             ||||||| || |||||||||||||||||||
Sbjct: 28857 tcgaacaccaccaggttgttctccatctgg 28886
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>dbj|AK108620.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-C07, full
            insert sequence
          Length = 1405

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 297  tcgaacatcagcaggttgttctccatctggtgccccccga 336
            ||||||| || |||||||| ||||||||||||||| ||||
Sbjct: 1102 tcgaacaccaccaggttgtgctccatctggtgcccgccga 1063



 Score = 46.1 bits (23), Expect = 0.073
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 222  gtgaagttgaagttgctgcaggt 244
            |||||||||||||||||||||||
Sbjct: 1177 gtgaagttgaagttgctgcaggt 1155
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>ref|NM_190071.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1275

 Score = 46.1 bits (23), Expect = 0.073
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 222  gtgaagttgaagttgctgcaggt 244
            |||||||||||||||||||||||
Sbjct: 1262 gtgaagttgaagttgctgcaggt 1240



 Score = 44.1 bits (22), Expect = 0.29
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 297  tcgaacatcagcaggttgttctccatctgg 326
            ||||||| || |||||||||||||||||||
Sbjct: 1187 tcgaacaccaccaggttgttctccatctgg 1158
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>dbj|AK111477.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-185-A02, full
           insert sequence
          Length = 1075

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 281 cgtctccttcacgagatcgaacatcagcaggttgttctccatctgg 326
           |||| ||||| | ||||| |||| |||||| |||||||||||||||
Sbjct: 152 cgtccccttctccagatcaaacagcagcagattgttctccatctgg 197
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>dbj|AK063356.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-C06, full
            insert sequence
          Length = 1372

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 281  cgtctccttcacgagatcgaacatcagcaggttgttctccatctgg 326
            |||| ||||| | ||||| |||| |||||| |||||||||||||||
Sbjct: 1250 cgtccccttctccagatcaaacagcagcagattgttctccatctgg 1205
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>gb|AC163894.2| Glomus intraradices clone JGIATSX-9F17, complete sequence
          Length = 37905

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 215   ccccatggtgaagttgaagtt 235
             |||||||||||||||||||||
Sbjct: 20359 ccccatggtgaagttgaagtt 20339
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>ref|XM_629011.1| Dictyostelium discoideum hypothetical protein (DDB0219875), partial
           mRNA
          Length = 336

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 222 gtgaagttgaagttgctgca 241
           ||||||||||||||||||||
Sbjct: 308 gtgaagttgaagttgctgca 327
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>ref|XM_629010.1| Dictyostelium discoideum hypothetical protein (DDB0192012), partial
           mRNA
          Length = 333

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 222 gtgaagttgaagttgctgca 241
           ||||||||||||||||||||
Sbjct: 305 gtgaagttgaagttgctgca 324
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>gb|DQ219479.1| wheat putative xylanase inhibitor mRNA, partial cds
          Length = 347

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 220 tggtgaagttgaagttgctgcagg 243
           ||||||| ||||||||||||||||
Sbjct: 294 tggtgaaattgaagttgctgcagg 271
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>ref|XM_726409.1| Aspergillus fumigatus Af293 hypothetical protein (Afu6g00530)
           partial mRNA
          Length = 1524

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 tggtgaagttgaagttgctg 239
           ||||||||||||||||||||
Sbjct: 807 tggtgaagttgaagttgctg 788
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>ref|XM_446000.1| Candida glabrata CBS138, CAGL0F00605g partial mRNA
          Length = 1488

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 217  ccatggtgaagttgaagttg 236
            ||||||||||||||||||||
Sbjct: 1305 ccatggtgaagttgaagttg 1324
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>gb|AC110237.8| Mus musculus chromosome 5, clone RP23-104B24, complete sequence
          Length = 243323

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   catggtgaagttgaagttgc 237
             ||||||||||||||||||||
Sbjct: 75875 catggtgaagttgaagttgc 75856
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>emb|AL356113.8| Human DNA sequence from clone RP11-429A24 on chromosome 10 Contains part
              of a novel gene (DKFZp761L0424) (KIAA1217) and three novel
              genes (FLJ11983 FLJ14139), complete sequence
          Length = 190429

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 95     atccaattttattctcgtcacata 118
              |||| |||||||||||||||||||
Sbjct: 182838 atcctattttattctcgtcacata 182815
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>ref|XM_968893.1| PREDICTED: Tribolium castaneum similar to CG13624-PC, isoform C
           (LOC662816), mRNA
          Length = 1635

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 246 gtgcggatgccgaggagcag 265
           ||||||||||||||||||||
Sbjct: 877 gtgcggatgccgaggagcag 896
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>emb|CR380952.1| Candida glabrata strain CBS138 chromosome F complete sequence
          Length = 927101

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   ccatggtgaagttgaagttg 236
             ||||||||||||||||||||
Sbjct: 64658 ccatggtgaagttgaagttg 64677
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>gb|AC105350.2| Drosophila melanogaster X BAC RP98-30C13 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 184334

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 223    tgaagttgaagttgctgcag 242
              ||||||||||||||||||||
Sbjct: 101897 tgaagttgaagttgctgcag 101878
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>ref|NM_132328.1| Drosophila melanogaster CG17446-RA (CG17446), mRNA
          Length = 1992

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 223  tgaagttgaagttgctgcag 242
            ||||||||||||||||||||
Sbjct: 1916 tgaagttgaagttgctgcag 1897
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 233     gttgctgcaggtagtgcggatgcc 256
               |||||||||||||||| |||||||
Sbjct: 3840646 gttgctgcaggtagtgtggatgcc 3840623
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>emb|BX831091.1|CNS0A0PM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS56ZG09 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1728

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 gtctccttcacgagatcgaa 301
           ||||||||||||||||||||
Sbjct: 474 gtctccttcacgagatcgaa 493
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>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0496D04
          Length = 197358

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 233   gttgctgcaggtagtgcggatgcc 256
             |||||||||||||||| |||||||
Sbjct: 79758 gttgctgcaggtagtgtggatgcc 79735
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>gb|AE003446.4| Drosophila melanogaster chromosome X, section 30 of 74 of the complete
              sequence
          Length = 290970

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 223    tgaagttgaagttgctgcag 242
              ||||||||||||||||||||
Sbjct: 221824 tgaagttgaagttgctgcag 221843
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>gb|AC115725.9| Mus musculus chromosome 5, clone RP23-21A18, complete sequence
          Length = 278172

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   catggtgaagttgaagttgc 237
             ||||||||||||||||||||
Sbjct: 15535 catggtgaagttgaagttgc 15554


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,258,566
Number of Sequences: 3902068
Number of extensions: 2258566
Number of successful extensions: 36177
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36102
Number of HSP's gapped (non-prelim): 75
length of query: 341
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 319
effective length of database: 17,147,199,772
effective search space: 5469956727268
effective search space used: 5469956727268
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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