ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61e12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY326952.1| Triticum aestivum putative plasma membrane Na+/H+... 165 4e-38
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 119 2e-24
3dbj|AK100537.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 2e-24
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 119 2e-24
5emb|BX664710.2|CNS09SC0 Oryza sativa chromosome 12, . PAC P0243A... 119 2e-24
6gb|AY328087.1| Oryza sativa (japonica cultivar-group) putative N... 111 5e-22
7gb|AY785147.1| Oryza sativa (japonica cultivar-group) Na+/H+ ant... 111 5e-22
8emb|AJ717346.1| Lycopersicon esculentum mRNA for putative plasma... 40 1.5
9emb|BX510316.11| Zebrafish DNA sequence from clone CH211-194J3 i... 40 1.5
10gb|AC124013.5| Homo sapiens BAC clone RP13-615K3 from 4, complet... 40 1.5
11gb|AC102735.9| Mus musculus chromosome 5, clone RP24-237I4, comp... 38 5.8
12gb|AC125186.6| Mus musculus BAC clone RP23-302C16 from chromosom... 38 5.8
13ref|XM_788362.1| PREDICTED: Strongylocentrotus purpuratus simila... 38 5.8
14gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 38 5.8
15gb|AC010531.8| Homo sapiens chromosome 16 clone RP11-178L8, comp... 38 5.8
16gb|AC136285.2| Homo sapiens chromosome 16 clone RP11-899L11, com... 38 5.8
17gb|AC079924.6| Homo sapiens BAC clone RP11-469L8 from 2, complet... 38 5.8
18emb|AL928851.6| Zebrafish DNA sequence from clone CH211-244E12 i... 38 5.8 
>gb|AY326952.1| Triticum aestivum putative plasma membrane Na+/H+ antiporter mRNA,
           complete cds
          Length = 3429

 Score =  165 bits (83), Expect = 4e-38
 Identities = 92/95 (96%)
 Strand = Plus / Minus

                                                                       
Query: 31  aaagcaatatagctgacagcaagggtaagtgaaatctctatgattggatcattgaaaata 90
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 752 aaagcaatatagctgacagcaagggtaagtgaaatctctatgattgtatcattgaaaata 693

                                              
Query: 91  aagcccagccatagtacagatgcaattccaaacgc 125
           || |||||||||||||| |||||||||||||||||
Sbjct: 692 aatcccagccatagtactgatgcaattccaaacgc 658
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  119 bits (60), Expect = 2e-24
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                            
Query: 15       ttatcttacagggtaaaaagcaatatagctgacagcaagggtaagtgaaatctctatgat 74
                ||||||||||| | | |||||||| |||||||||||||| ||||| |  |||||||||||
Sbjct: 27542527 ttatcttacagtgaagaaagcaatgtagctgacagcaagagtaagcgcgatctctatgat 27542586

                                                                
Query: 75       tggatcattgaaaataaagcccagccatagtacagatgcaattccaaa 122
                || |||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 27542587 tgtatcattaaaaataaagcccagccacagtactgatgcaattccaaa 27542634
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>dbj|AK100537.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101O07, full
           insert sequence
          Length = 2566

 Score =  119 bits (60), Expect = 2e-24
 Identities = 96/108 (88%)
 Strand = Plus / Minus

                                                                       
Query: 15  ttatcttacagggtaaaaagcaatatagctgacagcaagggtaagtgaaatctctatgat 74
           ||||||||||| | | |||||||| |||||||||||||| ||||| |  |||||||||||
Sbjct: 614 ttatcttacagtgaagaaagcaatgtagctgacagcaagagtaagcgcgatctctatgat 555

                                                           
Query: 75  tggatcattgaaaataaagcccagccatagtacagatgcaattccaaa 122
           || |||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 554 tgtatcattaaaaataaagcccagccacagtactgatgcaattccaaa 507
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  119 bits (60), Expect = 2e-24
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                            
Query: 15       ttatcttacagggtaaaaagcaatatagctgacagcaagggtaagtgaaatctctatgat 74
                ||||||||||| | | |||||||| |||||||||||||| ||||| |  |||||||||||
Sbjct: 27468085 ttatcttacagtgaagaaagcaatgtagctgacagcaagagtaagcgcgatctctatgat 27468144

                                                                
Query: 75       tggatcattgaaaataaagcccagccatagtacagatgcaattccaaa 122
                || |||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 27468145 tgtatcattaaaaataaagcccagccacagtactgatgcaattccaaa 27468192
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>emb|BX664710.2|CNS09SC0 Oryza sativa chromosome 12, . PAC P0243A04 of chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 78611

 Score =  119 bits (60), Expect = 2e-24
 Identities = 96/108 (88%)
 Strand = Plus / Minus

                                                                         
Query: 15    ttatcttacagggtaaaaagcaatatagctgacagcaagggtaagtgaaatctctatgat 74
             ||||||||||| | | |||||||| |||||||||||||| ||||| |  |||||||||||
Sbjct: 24467 ttatcttacagtgaagaaagcaatgtagctgacagcaagagtaagcgcgatctctatgat 24408

                                                             
Query: 75    tggatcattgaaaataaagcccagccatagtacagatgcaattccaaa 122
             || |||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 24407 tgtatcattaaaaataaagcccagccacagtactgatgcaattccaaa 24360
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>gb|AY328087.1| Oryza sativa (japonica cultivar-group) putative Na+/H+ antiporter
           (NHA1) mRNA, complete cds
          Length = 3736

 Score =  111 bits (56), Expect = 5e-22
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                       
Query: 31  aaagcaatatagctgacagcaagggtaagtgaaatctctatgattggatcattgaaaata 90
           |||||||| |||||||||||||| ||||| |  ||||||||||||| |||||| ||||||
Sbjct: 890 aaagcaatgtagctgacagcaagagtaagcgcgatctctatgattgtatcattaaaaata 831

                                           
Query: 91  aagcccagccatagtacagatgcaattccaaa 122
           ||||||||||| ||||| ||||||||||||||
Sbjct: 830 aagcccagccacagtactgatgcaattccaaa 799
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>gb|AY785147.1| Oryza sativa (japonica cultivar-group) Na+/H+ antiporter (SOS1)
           mRNA, complete cds
          Length = 3660

 Score =  111 bits (56), Expect = 5e-22
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                       
Query: 31  aaagcaatatagctgacagcaagggtaagtgaaatctctatgattggatcattgaaaata 90
           |||||||| |||||||||||||| ||||| |  ||||||||||||| |||||| ||||||
Sbjct: 748 aaagcaatgtagctgacagcaagagtaagcgcgatctctatgattgtatcattaaaaata 689

                                           
Query: 91  aagcccagccatagtacagatgcaattccaaa 122
           ||||||||||| ||||| ||||||||||||||
Sbjct: 688 aagcccagccacagtactgatgcaattccaaa 657
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>emb|AJ717346.1| Lycopersicon esculentum mRNA for putative plasmalemma Na+/H+
           antiporter (sos1 gene)
          Length = 3823

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 79  tcattgaaaataaagcccagccatagtacagatgcaattccaaa 122
           ||||||||||| || ||||||||||  ||||| || ||||||||
Sbjct: 908 tcattgaaaatgaatcccagccataaaacagaagctattccaaa 865
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>emb|BX510316.11| Zebrafish DNA sequence from clone CH211-194J3 in linkage group 12,
            complete sequence
          Length = 189720

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 73   attggatcattgaaaataaa 92
            ||||||||||||||||||||
Sbjct: 6899 attggatcattgaaaataaa 6918
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>gb|AC124013.5| Homo sapiens BAC clone RP13-615K3 from 4, complete sequence
          Length = 28356

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tgattatcttacagggtaaa 31
             ||||||||||||||||||||
Sbjct: 24067 tgattatcttacagggtaaa 24086
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>gb|AC102735.9| Mus musculus chromosome 5, clone RP24-237I4, complete sequence
          Length = 167871

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    tatagctgacagcaagggt 56
             |||||||||||||||||||
Sbjct: 95493 tatagctgacagcaagggt 95511
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>gb|AC125186.6| Mus musculus BAC clone RP23-302C16 from chromosome 1, complete sequence
          Length = 192042

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 55     gtaagtgaaatctctatga 73
              |||||||||||||||||||
Sbjct: 154286 gtaagtgaaatctctatga 154268
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>ref|XM_788362.1| PREDICTED: Strongylocentrotus purpuratus similar to CG5871-PA
            (LOC588691), partial mRNA
          Length = 1614

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 65   tctctatgattggatcatt 83
            |||||||||||||||||||
Sbjct: 1496 tctctatgattggatcatt 1514
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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 14      attatcttacagggtaaaa 32
               |||||||||||||||||||
Sbjct: 2570165 attatcttacagggtaaaa 2570183
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>gb|AC010531.8| Homo sapiens chromosome 16 clone RP11-178L8, complete sequence
          Length = 175051

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 3   ttccttatctgattatctt 21
           |||||||||||||||||||
Sbjct: 599 ttccttatctgattatctt 581
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>gb|AC136285.2| Homo sapiens chromosome 16 clone RP11-899L11, complete sequence
          Length = 235286

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 3     ttccttatctgattatctt 21
             |||||||||||||||||||
Sbjct: 21136 ttccttatctgattatctt 21154
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>gb|AC079924.6| Homo sapiens BAC clone RP11-469L8 from 2, complete sequence
          Length = 55282

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 3     ttccttatctgattatctt 21
             |||||||||||||||||||
Sbjct: 50901 ttccttatctgattatctt 50883
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>emb|AL928851.6| Zebrafish DNA sequence from clone CH211-244E12 in linkage group 20,
             complete sequence
          Length = 96043

 Score = 38.2 bits (19), Expect = 5.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 71    tgattggatcattgaaaataaag 93
             |||||||||||||||||| ||||
Sbjct: 64792 tgattggatcattgaaaacaaag 64770


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,221,197
Number of Sequences: 3902068
Number of extensions: 1221197
Number of successful extensions: 90678
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90598
Number of HSP's gapped (non-prelim): 80
length of query: 125
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 104
effective length of database: 17,151,101,840
effective search space: 1783714591360
effective search space used: 1783714591360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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