ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart61e10 |
|---|---|
| Clone Library Name | barley_pub |
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 56.2 bits (134), Expect = 2e-08 Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 9/56 (16%) Frame = -1 Query: 379 ACCGGGGPYNYNMSASCGLP----GATV-----CDDPDAHVSWDGIHLTEAPYRFI 239 +CCG GG YNYN CG+ G V CD+PD V WDG+H T+A +FI Sbjct: 302 SCCGHGGKYNYNKGIGCGMKKIVKGKEVYIGKPCDEPDKAVVWDGVHFTQAANKFI 357
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 50.1 bits (118), Expect = 1e-06 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 11/71 (15%) Frame = -1 Query: 376 CCGGGGPYNYNMSASCG-----------LPGATVCDDPDAHVSWDGIHLTEAPYRFIANT 230 CCG GG YN++++A CG + G+ C P V+WDG H TEA + + Sbjct: 305 CCGYGGKYNFSVTAPCGDTVTADDGTKIVVGSCAC--PSVRVNWDGAHYTEAANEYFFDQ 362 Query: 229 WLKGPYAHPPL 197 G ++ PP+ Sbjct: 363 ISTGAFSDPPV 373
>GUNX_CLOTM (P15329) Putative endoglucanase X (EC 3.2.1.4) (EGX)| (Endo-1,4-beta-glucanase) (Cellulase) (Fragment) Length = 224 Score = 36.2 bits (82), Expect = 0.020 Identities = 14/27 (51%), Positives = 18/27 (66%) Frame = -1 Query: 301 DPDAHVSWDGIHLTEAPYRFIANTWLK 221 D + +SWDG+HL+E Y IAN W K Sbjct: 109 DRNTDISWDGLHLSEIGYTKIANIWYK 135
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 31.6 bits (70), Expect = 0.49 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = -2 Query: 336 PRAGCPVPRCATTPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPS 196 P P P TT S G +T+P H TA+S T + P++TR S Sbjct: 4006 PALSSPHPSSRTTESPPSPG--TTTPGHTTATSRTTATATPSKTRTS 4050 Score = 31.6 bits (70), Expect = 0.49 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = -2 Query: 336 PRAGCPVPRCATTPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPS 196 P P P TT S G +T+P H TA+S T + P++TR S Sbjct: 2779 PALSSPHPSSRTTESPPSPG--TTTPGHTTATSRTTATATPSKTRTS 2823 Score = 31.6 bits (70), Expect = 0.49 Identities = 18/47 (38%), Positives = 24/47 (51%) Frame = -2 Query: 336 PRAGCPVPRCATTPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPS 196 P P P TT S G +T+P H TA+S T + P++TR S Sbjct: 2250 PALSSPHPSSRTTESPPSPG--TTTPGHTTATSRTTATATPSKTRTS 2294 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = -2 Query: 336 PRAGCPVPRCATTPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPS 196 P P P TT S G +T+P H +S T + P++TR S Sbjct: 3477 PALSSPHPSSRTTESPPSPG--TTTPGHTRGTSRTTATATPSKTRTS 3521
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 31.6 bits (70), Expect = 0.49 Identities = 16/57 (28%), Positives = 27/57 (47%) Frame = -1 Query: 376 CCGGGGPYNYNMSASCGLPGATVCDDPDAHVSWDGIHLTEAPYRFIANTWLKGPYAH 206 CC G + A C + +C + +++ WDG+H T+ Y+ I +K Y H Sbjct: 478 CCKTG---LLSAGALCKKSTSKICPNTSSYLFWDGVHPTQRAYKTINKVLIK-EYLH 530
>PACC_TRIRU (Q9C1A4) pH-response transcription factor pacC/RIM101| Length = 758 Score = 30.8 bits (68), Expect = 0.83 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Frame = -2 Query: 306 ATTPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRP--SPASS 184 ATT T+A M STS ASS++ SR+P + P +P SS Sbjct: 413 ATTTAATTASMMSTSAAATPASSISAASRSPHASTPALTPPSS 455
>Y4UD_RHISN (P55670) UPF0262 protein y4uD| Length = 165 Score = 30.8 bits (68), Expect = 0.83 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = -1 Query: 364 GGPYNYNMSASCGLPGATVCDDPDAHVSWDGIHLTEAPYRFIANTW 227 GGPY +S + G + DD AH+ HL+ AP+R + N + Sbjct: 48 GGPYRLKISMAAGRLVFHIADDKGAHIV--SHHLSLAPFRRLLNDY 91
>OR5K1_HUMAN (Q8NHB7) Olfactory receptor 5K1 (HTPCRX10)| Length = 316 Score = 30.8 bits (68), Expect = 0.83 Identities = 12/31 (38%), Positives = 21/31 (67%) Frame = -1 Query: 136 DILPCEKMLCVDGYIEMLPVFLWAESISILS 44 DILP ++ CVD YI L +F+++ S+ + + Sbjct: 180 DILPLYRLSCVDPYINELVLFIFSGSVQVFT 210
>Y2559_MYCTU (Q50739) Hypothetical protein Rv2559c/MT2636| Length = 452 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 7/43 (16%) Frame = +3 Query: 258 SVRWMPSQLTCASGSSHTVAPGSPHEALM-------L*LYGPP 365 +VR P+ L G H +APGSP L+ + LYGPP Sbjct: 32 AVRMRPASLDEVVGQDHLLAPGSPLRRLVEGSGVASVILYGPP 74
>VGP3_EBV (P03200) Envelope glycoprotein GP340/GP220 (Membrane antigen) (MA)| Length = 907 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Frame = -2 Query: 336 PRAGCPVPRCAT-TPMRTSAGMASTSPRHPTASSLTHGSRAPTR--TRPSP 193 P A P P T TP TS A T+P P A+S T G +PT T P+P Sbjct: 518 PNATSPTPAVTTPTPNATSPTPAVTTPT-PNATSPTLGKTSPTSAVTTPTP 567 Score = 29.6 bits (65), Expect = 1.9 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 9/57 (15%) Frame = -2 Query: 336 PRAGCPVPRCAT-TPMRTSAGMASTSPRH------PTASSLTHGSRAPTR--TRPSP 193 P A P P T TP TS + TSP P A+S T G +PT T P+P Sbjct: 532 PNATSPTPAVTTPTPNATSPTLGKTSPTSAVTTPTPNATSPTLGKTSPTSAVTTPTP 588
>HXA5_RAT (P52949) Homeobox protein Hox-A5 (Hox-1.3) (Fragment)| Length = 233 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 4/78 (5%) Frame = -2 Query: 330 AGCPVPRCATTPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPSPASSWKIWPINRKF- 154 +GC C +T + + G+ + S A + + + A + P+P + +I+P RK Sbjct: 105 SGCSA-NCGSTHISSREGVGTASAAEEDAPASSEQAGAQSEPSPAPPAQPQIYPWMRKLH 163 Query: 153 ---DSVPRRTFSRVRKCY 109 D++ R R CY Sbjct: 164 ISHDNIGGPEGKRARTCY 181
>CMTA2_MOUSE (Q80Y50) Calmodulin-binding transcription activator 2| Length = 1208 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/46 (34%), Positives = 21/46 (45%) Frame = -2 Query: 321 PVPRCATTPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPSPASS 184 P P P+ A TSP ++SS + G P RPSP +S Sbjct: 275 PEPPPLIAPLPPELPKAHTSPSSSSSSSSSSGFAEPLEIRPSPPTS 320
>AGA1_YEAST (P32323) A-agglutinin attachment subunit precursor| Length = 725 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/44 (31%), Positives = 27/44 (61%) Frame = -2 Query: 315 PRCATTPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPSPASS 184 P A+ ++ ++ST+ +PT +SL+ S +P+ T SP+S+ Sbjct: 160 PSSASIISPVTSTLSSTTSSNPTTTSLSSTSTSPSSTSTSPSST 203
>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)| (Trinucleotide repeat-containing gene 13 protein) Length = 1312 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/51 (39%), Positives = 21/51 (41%) Frame = -2 Query: 336 PRAGCPVPRCATTPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPSPASS 184 PRA P T P S P HP+A HGS AP T P SS Sbjct: 575 PRAATP-----TRPPSRPPSRPSRPPSHPSA----HGSPAPVSTMPKRMSS 616
>OR5H6_HUMAN (Q8NGV6) Olfactory receptor 5H6| Length = 309 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -1 Query: 136 DILPCEKMLCVDGYIEMLPVFLWAESISILS 44 DI+P K+ C D I L VF++A S+ + + Sbjct: 180 DIIPLLKISCTDSSINFLMVFIFAGSVQVFT 210
>CUTL1_RAT (P53565) Homeobox protein cut-like 1 (CCAAT displacement protein)| (CDP) (CDP2) (Fragment) Length = 862 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/51 (31%), Positives = 21/51 (41%) Frame = -2 Query: 321 PVPRCATTPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPSPASSWKIWP 169 P R TT T A + S + T SS R+ + + A WK WP Sbjct: 175 PERRNLTTSEETKADETNASGKEKTGSSQPRAERSQLQGPSATAEYWKEWP 225
>MRCKA_RAT (O54874) Serine/threonine-protein kinase MRCK alpha (EC 2.7.11.1)| (CDC42-binding protein kinase alpha) (Myotonic dystrophy kinase-related CDC42-binding kinase alpha) (Myotonic dystrophy protein kinase-like alpha) (MRCK alpha) Length = 1732 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = -2 Query: 318 VPRCATTPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPSPASSWKIWPINR 160 V + + P+R G S SPRH TAS+ ++ S P+ P S + +R Sbjct: 1675 VDQGSDAPVRDYDGEDSDSPRHSTASNSSNLSSPPSPVSPRKTKSLSLESTDR 1727
>YNR7_SCHPO (Q9USZ2) Hypothetical protein C11G11.07 in chromosome II| Length = 955 Score = 28.9 bits (63), Expect = 3.2 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Frame = -2 Query: 240 SLTHGSRAPTRTRPSPASSWKIWPI-NRKFDSVPRRTFSRVRKCYVLMVTSKCYLYSFGQ 64 SL H P IWPI +R D TFS V C + K ++Y+F + Sbjct: 632 SLVHPPSPAGELHPIVRLFQDIWPILSRTLD-----TFSDVLICERISKLLKNFIYTFKE 686 Query: 63 KALAFYPV 40 KA+ PV Sbjct: 687 KAIVTLPV 694
>SYNPO_RAT (Q9Z327) Synaptopodin| Length = 931 Score = 28.9 bits (63), Expect = 3.2 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 3/73 (4%) Frame = -2 Query: 336 PRAGCPVPRCATTPMRTSAGMASTSPR---HPTASSLTHGSRAPTRTRPSPASSWKIWPI 166 PRAG P P R+S G+ + + PTA S T+ S SP S + W Sbjct: 849 PRAGLPPSPALPRPSRSSPGLYNAPVQDSLQPTAVSPTYSSDI------SPVSPSRAWSP 902 Query: 165 NRKFDSVPRRTFS 127 K PR +FS Sbjct: 903 RAK--QAPRPSFS 913
>SMYD4_CHICK (Q5F3V0) SET and MYND domain-containing protein 4| Length = 742 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/50 (34%), Positives = 23/50 (46%) Frame = -1 Query: 331 CGLPGATVCDDPDAHVSWDGIHLTEAPYRFIANTWLKGPYAHPPLASVVL 182 CG A C A V+W+ H TE P + T G + H L +V+L Sbjct: 309 CGCSYAKYCSQNCADVAWEQYHRTECPLGALLLT--LGVFFHVALRTVLL 356
>SYNPO_MOUSE (Q8CC35) Synaptopodin| Length = 929 Score = 28.9 bits (63), Expect = 3.2 Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 3/73 (4%) Frame = -2 Query: 336 PRAGCPVPRCATTPMRTSAGMASTSPR---HPTASSLTHGSRAPTRTRPSPASSWKIWPI 166 PRAG P P R+S G+ + + PTA S T+ S SP S + W Sbjct: 847 PRAGLPPSPALPRPSRSSPGLYTAPVQDSLQPTAVSPTYSSDI------SPVSPSRAWSP 900 Query: 165 NRKFDSVPRRTFS 127 K PR +FS Sbjct: 901 RAK--QAPRPSFS 911
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = +3 Query: 273 PSQLTCASGSSHTVAPGSPHEALML*LYGPPPP 371 P + + GS H + P SPH L PPPP Sbjct: 412 PGGSSPSPGSGHPLPPASPHHVPPLQQQPPPPP 444
>MYOM1_HUMAN (P52179) Myomesin-1 (190 kDa titin-associated protein) (190 kDa| connectin-associated protein) Length = 1451 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = -2 Query: 303 TTPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPSPAS 187 TTP +++A +T+ + TAS + S+ T +R S AS Sbjct: 43 TTPKQSTASKQTTASKQSTASKQSTASKQSTASRQSTAS 81
>EDN2_MUSPF (Q8MJW9) Endothelin-2 precursor (ET-2) (Preproendothelin-2) (PPET2)| Length = 178 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/52 (30%), Positives = 20/52 (38%) Frame = -2 Query: 336 PRAGCPVPRCATTPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPSPASSW 181 P A C V ++ G + +P HP S GS R R SSW Sbjct: 5 PTAWCSVALALLLALQEGKGQVAAAPDHPAPSPRARGSH--LRPRRCSCSSW 54
>OAR_MYXXA (P38370) Protein oar precursor| Length = 1061 Score = 28.5 bits (62), Expect = 4.1 Identities = 21/61 (34%), Positives = 27/61 (44%) Frame = -1 Query: 352 NYNMSASCGLPGATVCDDPDAHVSWDGIHLTEAPYRFIANTWLKGPYAHPPLASVVLEDM 173 N N + G G T D PD + A Y +ANT L Y H + SV+ EDM Sbjct: 741 NVNRFYTGGTVGGTPVD-PDIKAQSSDEIVVGAEYEVLANTRLGASYTHKDMNSVI-EDM 798 Query: 172 A 170 + Sbjct: 799 S 799
>WHRN_MOUSE (Q80VW5) Whirlin| Length = 906 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/59 (32%), Positives = 26/59 (44%) Frame = -2 Query: 336 PRAGCPVPRCATTPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPSPASSWKIWPINR 160 PR P P A TP +SA + +SP + + S SR P T + + I P R Sbjct: 624 PRNRSPPPGTAPTPGPSSAQDSPSSPIYASISHANPSSRKPLDTHLALVNQHPIGPFPR 682
>SKN1_CAEEL (P34707) Protein skinhead-1| Length = 623 Score = 28.1 bits (61), Expect = 5.4 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Frame = -2 Query: 309 CATTPMRTSAGMASTSPRHPTASSL-THGSRAPTRTRPSPASSWKIWPINRKFDSVPRRT 133 C T T + ++S SPR+ + SS TH SR + PS S + + S PR + Sbjct: 474 CTTDSSSTCSRLSSESPRYTSESSTGTHESRFYGKLAPSSGSRY-------QRSSSPRSS 526 Query: 132 FSRVRKCYVLMVTS 91 S ++ V+ + S Sbjct: 527 QSSIKIARVVPLAS 540
>TIE1_BOVIN (Q06805) Tyrosine-protein kinase receptor Tie-1 precursor (EC| 2.7.10.1) Length = 1136 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Frame = -1 Query: 367 GGGPYNYNMSASCGLPGATVCDD-PDAHVSWDGIHLTEAPYRFIANTWLKGPYAHPPLAS 191 GG PY CG+ A + + P A+ + + Y + W PY PP A Sbjct: 1048 GGTPY-------CGMTCAELYEKLPQAYRMEQPRNCDDEVYELMRQCWRDRPYERPPFAQ 1100 Query: 190 VVLE 179 + L+ Sbjct: 1101 IALQ 1104
>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)| Length = 1285 Score = 28.1 bits (61), Expect = 5.4 Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 2/46 (4%) Frame = -2 Query: 315 PRCAT--TPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPSPASS 184 PR AT P S P HP+A HGS AP T P SS Sbjct: 545 PRAATHTRPPSRPPSRPSRPPSHPSA----HGSPAPVSTMPKRMSS 586
>SHK1_SCHPO (P50527) Serine/threonine-protein kinase pak1/shk1 (EC 2.7.11.1)| Length = 658 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%) Frame = -2 Query: 321 PVPRCATT-PMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPSPASSWKIWPI 166 P PR +T P+ + + ++S+S PT+++ + P+R P+P +S P+ Sbjct: 217 PFPRESTEKPLLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPL 269
>STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Protein| stubble-stubbloid) [Contains: Serine proteinase stubble non-catalytic chain; Serine proteinase stubble catalytic chain] Length = 787 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 9/52 (17%) Frame = -2 Query: 312 RCATTPMRTSAGMASTSPRHP---------TASSLTHGSRAPTRTRPSPASS 184 R TTP T+ + P P ++S+ T S+ PT TRP +SS Sbjct: 424 RRTTTPTTTTRRTTTNKPTRPYQRPTTATSSSSTSTTSSKTPTTTRPISSSS 475
>MRCKA_HUMAN (Q5VT25) Serine/threonine-protein kinase MRCK alpha (EC 2.7.11.1)| (CDC42-binding protein kinase alpha) (Myotonic dystrophy kinase-related CDC42-binding kinase alpha) (Myotonic dystrophy protein kinase-like alpha) (MRCK alpha) (DMPK-like alpha Length = 1732 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = -2 Query: 297 PMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPSPASSWKIWPINR 160 P R G S SPRH TAS+ ++ S P+ P S + +R Sbjct: 1682 PARDFDGEDSDSPRHSTASNSSNLSSPPSPASPRKTKSLSLESTDR 1727
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 28.1 bits (61), Expect = 5.4 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Frame = -2 Query: 336 PRAGCPVPRCATTP----MRTSAGMASTSPRHPTASSLTHGSRAPTRTRPSPASSWKIWP 169 P P P TTP + T+ +T+P PT ++ T P T PSP ++ I P Sbjct: 1573 PPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTT----PPPTTTPSPPTTTPITP 1628 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = -2 Query: 321 PVPRCATTPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPSPASSWKIWP 169 P P +P T+ +T+P PT ++ T P T PSP + I P Sbjct: 1464 PPPTTTPSPPTTTPSPPTTTPSPPTTTTTT----PPPTTTPSPPMTTPITP 1510
>3BP2_HUMAN (P78314) SH3 domain-binding protein 2 (3BP-2)| Length = 561 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/55 (36%), Positives = 22/55 (40%) Frame = -2 Query: 336 PRAGCPVPRCATTPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPSPASSWKIW 172 PR P PR TP R S ST P P G R P R S + S + W Sbjct: 261 PRRAEPCPRVPATPRRMSDPPLSTMPTAP-------GLRKPPCFRESASPSPEPW 308
>CBIO_METKA (Q8TYV9) Cobalt import ATP-binding protein cbiO| Length = 268 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/57 (28%), Positives = 28/57 (49%) Frame = +2 Query: 134 VLLGTESNFRLIGHIFQDDAGEGRVRVGALEPCVSDEAVGCLGEVDAIPADVRIGVV 304 +L T+ + R++GH D E R R+G + V D+ + + + DV G+V Sbjct: 45 LLTPTKGHIRVLGHDLPDGVREVRKRIGVVFQDVDDQLI-----MPTVLEDVAFGLV 96
>CT004_HUMAN (Q9Y312) Protein C20orf4| Length = 384 Score = 27.7 bits (60), Expect = 7.0 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 12/96 (12%) Frame = -2 Query: 333 RAGCPVPRCATTPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPSPASSWKIWP----- 169 R G +PRC G+A P A + S PT+ P A+ +I Sbjct: 173 RVGQNLPRCGIECKSYQEGLARLPEMKPRAGTEIRFSELPTQMFPEGATPAEITKHSMDL 232 Query: 168 -------INRKFDSVPRRTFSRVRKCYVLMVTSKCY 82 +N++F S P+ ++ +V + Y Sbjct: 233 SYALETVLNKQFPSSPQDVLGELQFAFVCFLLGNVY 268
>MUC13_RAT (P97881) Mucin-13 precursor| Length = 547 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = -2 Query: 318 VPRCATTPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPSPASS 184 +P +TP T+ STS + P + L + PT T P S+ Sbjct: 85 LPGTTSTPTTTATQPTSTSFQTPGTTQLPSSTSTPTTTATQPTST 129
>ZIM10_MOUSE (Q6P1E1) Retinoic acid-induced protein 17 (PIAS-like protein| Zimp10) Length = 1072 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Frame = -2 Query: 276 MASTSPRHPTASSL-THGSRAPTRTRPSP-ASSWKIWPINRKFDSVP 142 M PR P S THG R P +T P P S I I R + P Sbjct: 371 MGMNQPRPPGISPFGTHGQRMPQQTYPGPRPQSLPIQSIKRPYPGEP 417
>PLXB1_HUMAN (O43157) Plexin-B1 precursor (Semaphorin receptor SEP)| Length = 2135 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/55 (30%), Positives = 18/55 (32%) Frame = -2 Query: 336 PRAGCPVPRCATTPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPSPASSWKIW 172 P G P P T P + T P P A S S PS S W W Sbjct: 685 PARGGPSPSPPTAPKALATPAPDTLPVEPGAPSTATASDISPGASPSLLSPWGPW 739
>IL4RA_HUMAN (P24394) Interleukin-4 receptor alpha chain precursor (IL-4R-alpha)| (CD124 antigen) [Contains: Soluble interleukin-4 receptor alpha chain (sIL4Ralpha/prot) (IL-4-binding protein) (IL4-BP)] Length = 825 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = -1 Query: 94 IEMLPVFLWAESISILSCAKKTSAKMKC 11 +E+ LW ESIS++ C + A ++C Sbjct: 344 VEISKTVLWPESISVVRCVELFEAPVEC 371
>ZIM10_HUMAN (Q9ULJ6) Retinoic acid-induced protein 17 (PIAS-like protein| Zimp10) Length = 1067 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Frame = -2 Query: 276 MASTSPRHPTASSL-THGSRAPTRTRPSP-ASSWKIWPINRKFDSVP 142 M PR P S THG R P +T P P S I I R + P Sbjct: 365 MGMNQPRPPGISPFGTHGQRMPQQTYPGPRPQSLPIQNIKRPYPGEP 411
>TREM1_BOVIN (Q6QUN5) Triggering receptor expressed on myeloid cells 1 precursor| (TREM-1) Length = 232 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -2 Query: 321 PVPRCATTPMRTSAGMASTSPRHPTASSLTHGSRAP 214 P P+ T P+ TSA S+ T +++TH +RAP Sbjct: 165 PRPKPVTQPIPTSADRLSSPGFTVTPTNVTHVNRAP 200
>RF1_BURPS (Q63QF0) Peptide chain release factor 1 (RF-1)| Length = 360 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/50 (36%), Positives = 24/50 (48%) Frame = +2 Query: 197 EGRVRVGALEPCVSDEAVGCLGEVDAIPADVRIGVVAHRGTGQPARGTHV 346 +GR+ A V EA +GEV+ PAD+RI G G G H+ Sbjct: 193 QGRIHTSACTVAVMPEADE-IGEVEINPADLRIDTFRASGAG----GQHI 237
>RF1_BURMA (Q62DF3) Peptide chain release factor 1 (RF-1)| Length = 360 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/50 (36%), Positives = 24/50 (48%) Frame = +2 Query: 197 EGRVRVGALEPCVSDEAVGCLGEVDAIPADVRIGVVAHRGTGQPARGTHV 346 +GR+ A V EA +GEV+ PAD+RI G G G H+ Sbjct: 193 QGRIHTSACTVAVMPEADE-IGEVEINPADLRIDTFRASGAG----GQHI 237
>MUC2_RAT (Q62635) Mucin-2 precursor (Intestinal mucin 2) (Fragment)| Length = 1513 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = -2 Query: 315 PRCATTPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPSPASS 184 P +TT TS ++TSP T S + + T PSP +S Sbjct: 1440 PTTSTTSPTTSPTTSTTSPTTSTTSPTPSPTTSTTSPTPSPTTS 1483
>F100A_HUMAN (Q8TB05) Protein FAM100A| Length = 177 Score = 27.3 bits (59), Expect = 9.2 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 10/60 (16%) Frame = -2 Query: 330 AGCPVPRCATTP------MRTSAGMASTSPR--HPTASSLTHGSRAP--TRTRPSPASSW 181 +G P+ AT+P TS+ AS+ P P H + P T T PSPAS W Sbjct: 96 SGSPMAATATSPPPHFPHAATSSSAASSWPTAASPPGGPQHHQPQPPLWTPTPPSPASDW 155
>SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = -2 Query: 291 RTSAGMASTSPRHPTASSLTHGSRAPTRTRPSPASS 184 RTS + T+P + S SRAP+RT P P SS Sbjct: 1047 RTSPCQSPTAPEYSAPSLPIRPSRAPSRT-PGPLSS 1081
>SYA_HALSA (Q9HN24) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 929 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/44 (36%), Positives = 19/44 (43%) Frame = +2 Query: 215 GALEPCVSDEAVGCLGEVDAIPADVRIGVVAHRGTGQPARGTHV 346 G +P + G VD I R GVV HR T P +G V Sbjct: 560 GGGQPADTGVLTGDDHTVDVIDVQERDGVVLHRTTDNPGKGEFV 603
>NCOR2_HUMAN (Q9Y618) Nuclear receptor corepressor 2 (N-CoR2) (Silencing| mediator of retinoic acid and thyroid hormone receptor) (SMRT) (SMRTe) (Thyroid-, retinoic-acid-receptor-associated corepressor) (T3 receptor-associating factor) (TRAC) (CTG repeat p Length = 2517 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/55 (32%), Positives = 24/55 (43%) Frame = -2 Query: 321 PVPRCATTPMRTSAGMASTSPRHPTASSLTHGSRAPTRTRPSPASSWKIWPINRK 157 P P T P RTS +P PT +S G+ P PSP++ + P K Sbjct: 778 PPPGPPTPPRRTSR-----APIEPTPASEATGAPTPPPAPPSPSAPPPVVPKEEK 827 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,743,122 Number of Sequences: 219361 Number of extensions: 1354484 Number of successful extensions: 4507 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 4243 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4497 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
