ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61e10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476138.1| Oryza sativa (japonica cultivar-group), predic... 206 4e-50
2gb|AC104705.2| Oryza sativa (japonica cultivar-group) chromosome... 206 4e-50
3gb|AC130599.2| Oryza sativa (japonica cultivar-group) chromosome... 206 4e-50
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 206 4e-50
5dbj|AK122049.1| Oryza sativa (japonica cultivar-group) cDNA clon... 206 4e-50
6gb|BT019092.1| Zea mays clone Contig690.F mRNA sequence 60 5e-06
7gb|AY107565.1| Zea mays PCO081097 mRNA sequence 60 5e-06
8gb|BT009331.1| Triticum aestivum clone wlm24.pk0027.a6:fis, full... 58 2e-05
9gb|AY103823.1| Zea mays PCO141891 mRNA sequence 58 2e-05
10ref|XM_476136.1| Oryza sativa (japonica cultivar-group), predic... 52 0.001
11gb|AY580163.1| Oryza sativa (japonica cultivar-group) putative l... 52 0.001
12dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
13dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
14dbj|AK100289.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
15dbj|AK066113.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
16dbj|AK059511.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
17ref|NM_188437.1| Oryza sativa (japonica cultivar-group), predic... 50 0.005
18dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
19dbj|AP003104.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
20dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
21dbj|AK104740.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
22dbj|AK065001.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
23dbj|AK060120.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
24ref|NM_188436.1| Oryza sativa (japonica cultivar-group), predic... 48 0.021
25dbj|AK105422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.021
26dbj|AK103614.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.021
27ref|NM_188460.1| Oryza sativa (japonica cultivar-group), Ozsa815... 46 0.082
28ref|NM_188456.1| Oryza sativa (japonica cultivar-group), Ozsa815... 46 0.082
29gb|AC124150.4| Oryza sativa (japonica cultivar-group) chromosome... 46 0.082
30dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.082
31dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.082
32dbj|AK108542.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.082
33gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.082
34ref|XM_476139.1| Oryza sativa (japonica cultivar-group), predic... 44 0.32
35gb|AY108995.1| Zea mays PCO109727 mRNA sequence 42 1.3
36gb|AY104591.1| Zea mays PCO098873 mRNA sequence 42 1.3
37gb|AF172282.1| Oryza sativa adh1-adh2 region 40 5.1
38gb|AC123522.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
39gb|AC123521.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
40gb|AC120393.16| Mus musculus chromosome 7, clone RP24-312B12, co... 40 5.1
41dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 5.1
42gb|AC093426.2| Homo sapiens chromosome 1 clone RP11-544D21, comp... 40 5.1
43gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 5.1
44dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
45dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
46dbj|AP003887.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
47emb|AL845365.9| Zebrafish DNA sequence from clone DKEY-150H13 in... 40 5.1
48gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 5.1 
>ref|XM_476138.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1113

 Score =  206 bits (104), Expect = 4e-50
 Identities = 173/196 (88%)
 Strand = Plus / Minus

                                                                        
Query: 184  ggacgacgctggcgaggggcgggtgcgcgtaggggcccttgagccatgtgttagcgatga 243
            |||| |||||||||||||| ||||| |||||||||||| ||| ||| ||||| |||||||
Sbjct: 1093 ggacaacgctggcgaggggagggtgggcgtaggggcccctgatccaggtgttggcgatga 1034

                                                                        
Query: 244  agcggtagggtgcctcggtgaggtggatgccatcccagctgacgtgcgcatcggggtcgt 303
            |||||||||| |||||||||||||||||||| |||||||||||||| || ||||| || |
Sbjct: 1033 agcggtagggcgcctcggtgaggtggatgccgtcccagctgacgtgagcgtcgggatcct 974

                                                                        
Query: 304  cgcacaccgtggcaccgggcagcccgcacgaggcactcatgttgtagttgtatgggccac 363
            |||||  ||| || ||||| ||||||||||| || ||||||||||||||||| || ||||
Sbjct: 973  cgcacgtcgtcgcgccggggagcccgcacgacgcgctcatgttgtagttgtacggcccac 914

                            
Query: 364  cgcctccgcagcacgc 379
            |||| |||||||||||
Sbjct: 913  cgccgccgcagcacgc 898
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>gb|AC104705.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1008_D08,
             complete sequence
          Length = 94286

 Score =  206 bits (104), Expect = 4e-50
 Identities = 173/196 (88%)
 Strand = Plus / Minus

                                                                         
Query: 184   ggacgacgctggcgaggggcgggtgcgcgtaggggcccttgagccatgtgttagcgatga 243
             |||| |||||||||||||| ||||| |||||||||||| ||| ||| ||||| |||||||
Sbjct: 46259 ggacaacgctggcgaggggagggtgggcgtaggggcccctgatccaggtgttggcgatga 46200

                                                                         
Query: 244   agcggtagggtgcctcggtgaggtggatgccatcccagctgacgtgcgcatcggggtcgt 303
             |||||||||| |||||||||||||||||||| |||||||||||||| || ||||| || |
Sbjct: 46199 agcggtagggcgcctcggtgaggtggatgccgtcccagctgacgtgagcgtcgggatcct 46140

                                                                         
Query: 304   cgcacaccgtggcaccgggcagcccgcacgaggcactcatgttgtagttgtatgggccac 363
             |||||  ||| || ||||| ||||||||||| || ||||||||||||||||| || ||||
Sbjct: 46139 cgcacgtcgtcgcgccggggagcccgcacgacgcgctcatgttgtagttgtacggcccac 46080

                             
Query: 364   cgcctccgcagcacgc 379
             |||| |||||||||||
Sbjct: 46079 cgccgccgcagcacgc 46064



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                         
Query: 212   gtaggggcccttgagccatgtgttagcgatgaagcggtagggtgcctcggtgaggtggat 271
             ||||||||||||||||||    |  |||||| |||||||||  |||||||| ||||||||
Sbjct: 10465 gtaggggcccttgagccagccatcggcgatggagcggtaggcggcctcggtaaggtggat 10406

                       
Query: 272   gccatcccag 281
             ||| ||||||
Sbjct: 10405 gccgtcccag 10396



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 255   gcctcggtgaggtggatgccatcccagctgacgt 288
             ||||||||||| |||||||| |||||| ||||||
Sbjct: 61848 gcctcggtgagatggatgccgtcccagttgacgt 61815
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>gb|AC130599.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0016G07,
              complete sequence
          Length = 123167

 Score =  206 bits (104), Expect = 4e-50
 Identities = 173/196 (88%)
 Strand = Plus / Minus

                                                                          
Query: 184    ggacgacgctggcgaggggcgggtgcgcgtaggggcccttgagccatgtgttagcgatga 243
              |||| |||||||||||||| ||||| |||||||||||| ||| ||| ||||| |||||||
Sbjct: 113160 ggacaacgctggcgaggggagggtgggcgtaggggcccctgatccaggtgttggcgatga 113101

                                                                          
Query: 244    agcggtagggtgcctcggtgaggtggatgccatcccagctgacgtgcgcatcggggtcgt 303
              |||||||||| |||||||||||||||||||| |||||||||||||| || ||||| || |
Sbjct: 113100 agcggtagggcgcctcggtgaggtggatgccgtcccagctgacgtgagcgtcgggatcct 113041

                                                                          
Query: 304    cgcacaccgtggcaccgggcagcccgcacgaggcactcatgttgtagttgtatgggccac 363
              |||||  ||| || ||||| ||||||||||| || ||||||||||||||||| || ||||
Sbjct: 113040 cgcacgtcgtcgcgccggggagcccgcacgacgcgctcatgttgtagttgtacggcccac 112981

                              
Query: 364    cgcctccgcagcacgc 379
              |||| |||||||||||
Sbjct: 112980 cgccgccgcagcacgc 112965



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                         
Query: 212   gtaggggcccttgagccatgtgttagcgatgaagcggtagggtgcctcggtgaggtggat 271
             ||||||||||||||||||    |  |||||| |||||||||  |||||||| ||||||||
Sbjct: 77366 gtaggggcccttgagccagccatcggcgatggagcggtaggcggcctcggtaaggtggat 77307

                       
Query: 272   gccatcccag 281
             ||| ||||||
Sbjct: 77306 gccgtcccag 77297
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  206 bits (104), Expect = 4e-50
 Identities = 173/196 (88%)
 Strand = Plus / Minus

                                                                           
Query: 184     ggacgacgctggcgaggggcgggtgcgcgtaggggcccttgagccatgtgttagcgatga 243
               |||| |||||||||||||| ||||| |||||||||||| ||| ||| ||||| |||||||
Sbjct: 6741998 ggacaacgctggcgaggggagggtgggcgtaggggcccctgatccaggtgttggcgatga 6741939

                                                                           
Query: 244     agcggtagggtgcctcggtgaggtggatgccatcccagctgacgtgcgcatcggggtcgt 303
               |||||||||| |||||||||||||||||||| |||||||||||||| || ||||| || |
Sbjct: 6741938 agcggtagggcgcctcggtgaggtggatgccgtcccagctgacgtgagcgtcgggatcct 6741879

                                                                           
Query: 304     cgcacaccgtggcaccgggcagcccgcacgaggcactcatgttgtagttgtatgggccac 363
               |||||  ||| || ||||| ||||||||||| || ||||||||||||||||| || ||||
Sbjct: 6741878 cgcacgtcgtcgcgccggggagcccgcacgacgcgctcatgttgtagttgtacggcccac 6741819

                               
Query: 364     cgcctccgcagcacgc 379
               |||| |||||||||||
Sbjct: 6741818 cgccgccgcagcacgc 6741803



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                           
Query: 212     gtaggggcccttgagccatgtgttagcgatgaagcggtagggtgcctcggtgaggtggat 271
               ||||||||||||||||||    |  |||||| |||||||||  |||||||| ||||||||
Sbjct: 6706204 gtaggggcccttgagccagccatcggcgatggagcggtaggcggcctcggtaaggtggat 6706145

                         
Query: 272     gccatcccag 281
               ||| ||||||
Sbjct: 6706144 gccgtcccag 6706135



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 255     gcctcggtgaggtggatgccatcccagctgacgt 288
               ||||||||||| |||||||| |||||| ||||||
Sbjct: 6757587 gcctcggtgagatggatgccgtcccagttgacgt 6757554
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>dbj|AK122049.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114D08, full
            insert sequence
          Length = 1551

 Score =  206 bits (104), Expect = 4e-50
 Identities = 173/196 (88%)
 Strand = Plus / Minus

                                                                        
Query: 184  ggacgacgctggcgaggggcgggtgcgcgtaggggcccttgagccatgtgttagcgatga 243
            |||| |||||||||||||| ||||| |||||||||||| ||| ||| ||||| |||||||
Sbjct: 1183 ggacaacgctggcgaggggagggtgggcgtaggggcccctgatccaggtgttggcgatga 1124

                                                                        
Query: 244  agcggtagggtgcctcggtgaggtggatgccatcccagctgacgtgcgcatcggggtcgt 303
            |||||||||| |||||||||||||||||||| |||||||||||||| || ||||| || |
Sbjct: 1123 agcggtagggcgcctcggtgaggtggatgccgtcccagctgacgtgagcgtcgggatcct 1064

                                                                        
Query: 304  cgcacaccgtggcaccgggcagcccgcacgaggcactcatgttgtagttgtatgggccac 363
            |||||  ||| || ||||| ||||||||||| || ||||||||||||||||| || ||||
Sbjct: 1063 cgcacgtcgtcgcgccggggagcccgcacgacgcgctcatgttgtagttgtacggcccac 1004

                            
Query: 364  cgcctccgcagcacgc 379
            |||| |||||||||||
Sbjct: 1003 cgccgccgcagcacgc 988
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>gb|BT019092.1| Zea mays clone Contig690.F mRNA sequence
          Length = 811

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                 
Query: 255 gcctcggtgaggtggatgccatcccagctgacgtgcgc 292
           |||||||||||||||||||| |||||||||| ||||||
Sbjct: 501 gcctcggtgaggtggatgccgtcccagctgaggtgcgc 464
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>gb|AY107565.1| Zea mays PCO081097 mRNA sequence
          Length = 916

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                       
Query: 212 gtaggggcccttgagccatgtgttagcgatgaagcggtagggtgcctcggtgaggtggat 271
           ||||||||||||||||||   ||  || ||| |||||||||  |||||||||||||||||
Sbjct: 585 gtaggggcccttgagccagccgtcggcaatggagcggtaggccgcctcggtgaggtggat 526

                     
Query: 272 gccatcccag 281
           ||| ||||||
Sbjct: 525 gccgtcccag 516
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>gb|BT009331.1| Triticum aestivum clone wlm24.pk0027.a6:fis, full insert mRNA
            sequence
          Length = 1634

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 255  gcctcggtgaggtggatgccatcccagctgacgtgcg 291
            |||||||||||||||||||| |||||||||| |||||
Sbjct: 1180 gcctcggtgaggtggatgccgtcccagctgaggtgcg 1144
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>gb|AY103823.1| Zea mays PCO141891 mRNA sequence
          Length = 1313

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 255  gcctcggtgaggtggatgccatcccagctgacgtgcg 291
            |||||||||||||||||||| |||||||||| |||||
Sbjct: 1131 gcctcggtgaggtggatgccgtcccagctgaggtgcg 1095
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>ref|XM_476136.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1086

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                        
Query: 212  gtaggggcccttgagccatgtgttagcgatgaagcggtagggtgcctcggtgaggtggat 271
            ||||||||||||||||||    |  |||||| |||||||||  |||||||| ||||||||
Sbjct: 1062 gtaggggcccttgagccagccatcggcgatggagcggtaggcggcctcggtaaggtggat 1003

                      
Query: 272  gccatcccag 281
            ||| ||||||
Sbjct: 1002 gccgtcccag 993
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>gb|AY580163.1| Oryza sativa (japonica cultivar-group) putative lipase mRNA, complete
            cds
          Length = 1413

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                        
Query: 212  gtaggggcccttgagccatgtgttagcgatgaagcggtagggtgcctcggtgaggtggat 271
            ||||||||||||||||||    |  |||||| |||||||||  |||||||| ||||||||
Sbjct: 1124 gtaggggcccttgagccagccatcggcgatggagcggtaggcggcctcggtaaggtggat 1065

                      
Query: 272  gccatcccag 281
            ||| ||||||
Sbjct: 1064 gccgtcccag 1055
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                             
Query: 254     tgcctcggtgaggtggatgccatcccagct 283
               ||||||||||||||||||||| ||||||||
Sbjct: 2907402 tgcctcggtgaggtggatgccgtcccagct 2907431
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>dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0046E09
          Length = 146776

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                           
Query: 254   tgcctcggtgaggtggatgccatcccagct 283
             ||||||||||||||||||||| ||||||||
Sbjct: 67548 tgcctcggtgaggtggatgccgtcccagct 67577
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>dbj|AK100289.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075I03, full
            insert sequence
          Length = 1410

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                        
Query: 212  gtaggggcccttgagccatgtgttagcgatgaagcggtagggtgcctcggtgaggtggat 271
            ||||||||||||||||||    |  |||||| |||||||||  |||||||| ||||||||
Sbjct: 1128 gtaggggcccttgagccagccatcggcgatggagcggtaggcggcctcggtaaggtggat 1069

                      
Query: 272  gccatcccag 281
            ||| ||||||
Sbjct: 1068 gccgtcccag 1059
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>dbj|AK066113.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051I09, full
            insert sequence
          Length = 1392

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 254  tgcctcggtgaggtggatgccatcccagct 283
            ||||||||||||||||||||| ||||||||
Sbjct: 1030 tgcctcggtgaggtggatgccgtcccagct 1001
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>dbj|AK059511.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-B05, full
            insert sequence
          Length = 1422

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                        
Query: 212  gtaggggcccttgagccatgtgttagcgatgaagcggtagggtgcctcggtgaggtggat 271
            ||||||||||||||||||    |  |||||| |||||||||  |||||||| ||||||||
Sbjct: 1139 gtaggggcccttgagccagccatcggcgatggagcggtaggcggcctcggtaaggtggat 1080

                      
Query: 272  gccatcccag 281
            ||| ||||||
Sbjct: 1079 gccgtcccag 1070
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>ref|NM_188437.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1119

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 255  gcctcggtgaggtggatgccatcccagct 283
            |||||||||||||||||||| ||||||||
Sbjct: 1040 gcctcggtgaggtggatgccgtcccagct 1012
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                            
Query: 255     gcctcggtgaggtggatgccatcccagct 283
               |||||||||||||||||||| ||||||||
Sbjct: 6282168 gcctcggtgaggtggatgccgtcccagct 6282140



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                   
Query: 246     cggtagggtgcctcggtgaggtggatgccatcccag 281
               |||||||  |||||||||||||| ||||||||||||
Sbjct: 6269470 cggtaggcagcctcggtgaggtgaatgccatcccag 6269435



 Score = 46.1 bits (23), Expect = 0.082
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 255     gcctcggtgaggtggatgccatcccagctga 285
               ||||| |||||||||||||| ||||||||||
Sbjct: 6380758 gcctccgtgaggtggatgccgtcccagctga 6380728



 Score = 46.1 bits (23), Expect = 0.082
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 255     gcctcggtgaggtggatgccatcccagctga 285
               ||||| |||||||||||||| ||||||||||
Sbjct: 6365978 gcctccgtgaggtggatgccgtcccagctga 6365948
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>dbj|AP003104.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0038J17
          Length = 180186

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 255    gcctcggtgaggtggatgccatcccagct 283
              |||||||||||||||||||| ||||||||
Sbjct: 144366 gcctcggtgaggtggatgccgtcccagct 144338



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                  
Query: 246    cggtagggtgcctcggtgaggtggatgccatcccag 281
              |||||||  |||||||||||||| ||||||||||||
Sbjct: 131668 cggtaggcagcctcggtgaggtgaatgccatcccag 131633
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>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0515G01
          Length = 175072

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 255   gcctcggtgaggtggatgccatcccagct 283
             |||||||||||||||||||| ||||||||
Sbjct: 53234 gcctcggtgaggtggatgccgtcccagct 53206



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 246   cggtagggtgcctcggtgaggtggatgccatcccag 281
             |||||||  |||||||||||||| ||||||||||||
Sbjct: 40536 cggtaggcagcctcggtgaggtgaatgccatcccag 40501



 Score = 46.1 bits (23), Expect = 0.082
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 255    gcctcggtgaggtggatgccatcccagctga 285
              ||||| |||||||||||||| ||||||||||
Sbjct: 151824 gcctccgtgaggtggatgccgtcccagctga 151794



 Score = 46.1 bits (23), Expect = 0.082
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 255    gcctcggtgaggtggatgccatcccagctga 285
              ||||| |||||||||||||| ||||||||||
Sbjct: 137044 gcctccgtgaggtggatgccgtcccagctga 137014
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>dbj|AK104740.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-D10, full
           insert sequence
          Length = 1356

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 255 gcctcggtgaggtggatgccatcccagct 283
           |||||||||||||||||||| ||||||||
Sbjct: 964 gcctcggtgaggtggatgccgtcccagct 936
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>dbj|AK065001.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E04, full
            insert sequence
          Length = 1583

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 255  gcctcggtgaggtggatgccatcccagct 283
            |||||||||||||||||||| ||||||||
Sbjct: 1192 gcctcggtgaggtggatgccgtcccagct 1164
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>dbj|AK060120.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-F04, full
           insert sequence
          Length = 1356

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 255 gcctcggtgaggtggatgccatcccagct 283
           |||||||||||||||||||| ||||||||
Sbjct: 964 gcctcggtgaggtggatgccgtcccagct 936
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>ref|NM_188436.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1095

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 246  cggtagggtgcctcggtgaggtggatgccatcccag 281
            |||||||  |||||||||||||| ||||||||||||
Sbjct: 1037 cggtaggcagcctcggtgaggtgaatgccatcccag 1002
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>dbj|AK105422.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-B12, full
            insert sequence
          Length = 1772

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 246  cggtagggtgcctcggtgaggtggatgccatcccag 281
            |||||||  |||||||||||||| ||||||||||||
Sbjct: 1470 cggtaggcagcctcggtgaggtgaatgccatcccag 1435
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>dbj|AK103614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133K20, full
            insert sequence
          Length = 1416

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 246  cggtagggtgcctcggtgaggtggatgccatcccag 281
            |||||||  |||||||||||||| ||||||||||||
Sbjct: 1114 cggtaggcagcctcggtgaggtgaatgccatcccag 1079
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>ref|NM_188460.1| Oryza sativa (japonica cultivar-group), Ozsa8155 predicted mRNA
          Length = 1110

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 255  gcctcggtgaggtggatgccatcccagctga 285
            ||||| |||||||||||||| ||||||||||
Sbjct: 1031 gcctccgtgaggtggatgccgtcccagctga 1001
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>ref|NM_188456.1| Oryza sativa (japonica cultivar-group), Ozsa8151 predicted mRNA
          Length = 1137

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 255  gcctcggtgaggtggatgccatcccagctga 285
            ||||| |||||||||||||| ||||||||||
Sbjct: 1058 gcctccgtgaggtggatgccgtcccagctga 1028
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>gb|AC124150.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0001I22,
              complete sequence
          Length = 162413

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 261    gtgaggtggatgccatcccagct 283
              |||||||||||||||||||||||
Sbjct: 101231 gtgaggtggatgccatcccagct 101209
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 261      gtgaggtggatgccatcccagct 283
                |||||||||||||||||||||||
Sbjct: 18137398 gtgaggtggatgccatcccagct 18137420



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 194     ggcgaggggcgggtgcgcgt 213
               ||||||||||||||||||||
Sbjct: 5595661 ggcgaggggcgggtgcgcgt 5595642
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>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0665D10
          Length = 134967

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 255  gcctcggtgaggtggatgccatcccagctga 285
            ||||| |||||||||||||| ||||||||||
Sbjct: 3153 gcctccgtgaggtggatgccgtcccagctga 3123
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>dbj|AK108542.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-D07, full
            insert sequence
          Length = 1311

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 261  gtgaggtggatgccatcccagct 283
            |||||||||||||||||||||||
Sbjct: 1132 gtgaggtggatgccatcccagct 1110
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 261      gtgaggtggatgccatcccagct 283
                |||||||||||||||||||||||
Sbjct: 18265974 gtgaggtggatgccatcccagct 18265952



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 194     ggcgaggggcgggtgcgcgt 213
               ||||||||||||||||||||
Sbjct: 5662138 ggcgaggggcgggtgcgcgt 5662119
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>ref|XM_476139.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1143

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 255  gcctcggtgaggtggatgccatcccagctgacgt 288
            ||||||||||| |||||||| |||||| ||||||
Sbjct: 1064 gcctcggtgagatggatgccgtcccagttgacgt 1031
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>gb|AY108995.1| Zea mays PCO109727 mRNA sequence
          Length = 847

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 255 gcctcggtgaggtggatgccatcccagct 283
           ||||| |||||||||||||| ||||||||
Sbjct: 323 gcctccgtgaggtggatgccgtcccagct 295
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>gb|AY104591.1| Zea mays PCO098873 mRNA sequence
          Length = 1094

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 339  ctcatgttgtagttgtatgggccaccgcctccgcagcacgc 379
            |||| |||||||||||| || || ||||| |||||||||||
Sbjct: 1090 ctcacgttgtagttgtacggcccgccgccgccgcagcacgc 1050
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>gb|AF172282.1| Oryza sativa adh1-adh2 region
          Length = 339485

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 194   ggcgaggggcgggtgcgcgt 213
             ||||||||||||||||||||
Sbjct: 80304 ggcgaggggcgggtgcgcgt 80323
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>gb|AC123522.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0051B13,
              complete sequence
          Length = 178000

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 194    ggcgaggggcgggtgcgcgt 213
              ||||||||||||||||||||
Sbjct: 140779 ggcgaggggcgggtgcgcgt 140760
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>gb|AC123521.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0037P04, complete sequence
          Length = 139693

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   ggcgaggggcgggtgcgcgt 213
             ||||||||||||||||||||
Sbjct: 68221 ggcgaggggcgggtgcgcgt 68202
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>gb|AC120393.16| Mus musculus chromosome 7, clone RP24-312B12, complete sequence
          Length = 183977

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 97     aaccatcaacacatagcattttct 120
              |||||||||||||||| |||||||
Sbjct: 128508 aaccatcaacacataggattttct 128485
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 301     cgtcgcacaccgtggcaccg 320
               ||||||||||||||||||||
Sbjct: 1647346 cgtcgcacaccgtggcaccg 1647327
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>gb|AC093426.2| Homo sapiens chromosome 1 clone RP11-544D21, complete sequence
          Length = 169100

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    tgcacaggataaaatgctaa 57
             ||||||||||||||||||||
Sbjct: 38947 tgcacaggataaaatgctaa 38928
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 287     gtgcgcatcggggtcgtcgc 306
               ||||||||||||||||||||
Sbjct: 3590009 gtgcgcatcggggtcgtcgc 3589990
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 84       agcatttcgatgtaaccatcaaca 107
                |||||||||||||| |||||||||
Sbjct: 26066063 agcatttcgatgtagccatcaaca 26066086
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>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1191_A10
          Length = 140643

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 84    agcatttcgatgtaaccatcaaca 107
             |||||||||||||| |||||||||
Sbjct: 9994  agcatttcgatgtagccatcaaca 10017
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>dbj|AP003887.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1186_G01
          Length = 112077

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 84     agcatttcgatgtaaccatcaaca 107
              |||||||||||||| |||||||||
Sbjct: 101624 agcatttcgatgtagccatcaaca 101647
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>emb|AL845365.9| Zebrafish DNA sequence from clone DKEY-150H13 in linkage group 20,
             complete sequence
          Length = 212942

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 54    ctaatgctttctgcccaaaggaatacag 81
             |||||||||||| ||||||| |||||||
Sbjct: 24617 ctaatgctttctccccaaagaaatacag 24644
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 301     cgtcgcacaccgtggcaccg 320
               ||||||||||||||||||||
Sbjct: 1664322 cgtcgcacaccgtggcaccg 1664303


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,573,896
Number of Sequences: 3902068
Number of extensions: 2573896
Number of successful extensions: 44101
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43837
Number of HSP's gapped (non-prelim): 263
length of query: 379
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 357
effective length of database: 17,147,199,772
effective search space: 6121550318604
effective search space used: 6121550318604
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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