ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MSC3_CANGA (Q6FX33) Meiotic sister-chromatid recombination prote... 32 0.40
2MNN11_YEAST (P46985) Probable alpha-1,6-mannosyltransferase MNN1... 29 3.4
3BCE1_HUMAN (O60756) Protein BCE-1 28 5.8
4EFTU_CHLTR (P26622) Elongation factor Tu (EF-Tu) 28 5.8
5STP7_ARATH (O04249) Sugar transport protein 7 (Hexose transporte... 28 5.8

>MSC3_CANGA (Q6FX33) Meiotic sister-chromatid recombination protein 3|
          Length = 834

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 66  NKSAFTQHRIRIPK-YGGRMMLLYVARTRIYSVGSPTDTRFTRARSTFFSSAPAAGR 233
           NK A    +  +P+ YGG+ +    A   IY+  +P  T  +R+ S   S  PAA R
Sbjct: 23  NKPAVDSSKYYVPREYGGKRLSASAAAAAIYTNPNPNATGVSRSYSLMHSYNPAAAR 79



to top

>MNN11_YEAST (P46985) Probable alpha-1,6-mannosyltransferase MNN11 (EC 2.4.1.-)|
           (Mannan polymerase II complex MNN11 subunit) (M-Pol II
           subunit MNN11)
          Length = 422

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
 Frame = +3

Query: 9   KPSISGDTKMDRQTNKQINNKSAFTQHRIRIPKY----GGRMMLLYVARTRIYSVGSPTD 176
           KP   G T   R    Q  N+  F Q++    K+       + +LY    R Y +     
Sbjct: 4   KPRTKGKTYSSRSVGSQWFNRLGFKQNKYGTCKFLSIITAFVFILYFFSNRFYPISRSAG 63

Query: 177 TRFTRARSTFFSSAPAAGR 233
             ++ +   + +  PA+ R
Sbjct: 64  ASYSPSHGLYINEIPASSR 82



to top

>BCE1_HUMAN (O60756) Protein BCE-1|
          Length = 84

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 78  MLICYLFVCLFVCPFWCPLKWT 13
           M  C+L++  F C  W  LKWT
Sbjct: 39  MRTCFLYLRFFPCLSWMSLKWT 60



to top

>EFTU_CHLTR (P26622) Elongation factor Tu (EF-Tu)|
          Length = 393

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 176 HTVYTCALYILQLRSGGR 229
           HT + CA+Y+LQ   GGR
Sbjct: 301 HTQFKCAVYVLQKEEGGR 318



to top

>STP7_ARATH (O04249) Sugar transport protein 7 (Hexose transporter 7)|
          Length = 513

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = -3

Query: 84  G*MLICYLFVCLFVCPF---WCPLKWT 13
           G  +I  +F+CLFV  F   W PL WT
Sbjct: 384 GYSVIVVIFICLFVVAFGWSWGPLGWT 410


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,405,121
Number of Sequences: 219361
Number of extensions: 840667
Number of successful extensions: 2044
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2042
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top