ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart61e03 |
|---|---|
| Clone Library Name | barley_pub |
>FLBA_EMENI (P38093) Developmental regulator flbA| Length = 719 Score = 33.5 bits (75), Expect = 0.13 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Frame = +1 Query: 118 HTTTEYKHDHTVPTASSIQSLA*LWFHPLQNVAEATDPSFILATCTTNSSSCPH--ARDI 291 H K+DHT + +I +L L F + + DPS I+ T TT + S AR + Sbjct: 249 HRVRFTKYDHTFTSEEAINNLGSLKFSQSNRMPDPKDPSRIVTTTTTTTFSMAKEMARSV 308 Query: 292 C 294 C Sbjct: 309 C 309
>MT12_MYTED (P80247) Metallothionein 10-II (MT-10-II)| Length = 72 Score = 30.8 bits (68), Expect = 0.81 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = -3 Query: 395 CRMGQAVGISGASMSCSWQLVV--IDGSCQCG 306 CR G A SGA CS VV GSC+CG Sbjct: 23 CRCGDACKCSGADCKCSGCKVVCKCSGSCECG 54
>DPYD_PIG (Q28943) Dihydropyrimidine dehydrogenase [NADP+] precursor (EC| 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -3 Query: 320 SCQCGLRTAQMSLACGQDEELVVHVAK 240 SC G+ M LACGQD ELV ++ + Sbjct: 670 SCPHGMGERGMGLACGQDPELVRNICR 696
>DPYD_HUMAN (Q12882) Dihydropyrimidine dehydrogenase [NADP+] precursor (EC| 1.3.1.2) (DPD) (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -3 Query: 320 SCQCGLRTAQMSLACGQDEELVVHVAK 240 SC G+ M LACGQD ELV ++ + Sbjct: 670 SCPHGMGERGMGLACGQDPELVRNICR 696
>DPYD_BOVIN (Q28007) Dihydropyrimidine dehydrogenase [NADP+] (EC 1.3.1.2) (DPD)| (DHPDHase) (Dihydrouracil dehydrogenase) (Dihydrothymine dehydrogenase) Length = 1025 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -3 Query: 320 SCQCGLRTAQMSLACGQDEELVVHVAK 240 SC G+ M LACGQD ELV ++ + Sbjct: 670 SCPHGMGERGMGLACGQDPELVRNICR 696
>MDR10_ARATH (Q9SGY1) Multidrug resistance protein 10 (P-glycoprotein 10)| Length = 1316 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/61 (26%), Positives = 31/61 (50%) Frame = -3 Query: 269 DEELVVHVAKMKEGSVASATFCSG*NHSYAKDCMLLAVGTVWSCLYSVVVCRLYIMIGCM 90 D +V A KE S +F + + DC+L+A+G++ +C++ V +I G + Sbjct: 6 DPAIVDMAAAEKEKKRPSVSFLKLFSFADFYDCVLMALGSIGACIHGASVPVFFIFFGKL 65 Query: 89 L 87 + Sbjct: 66 I 66
>RCEM_RHOCA (P11847) Reaction center protein M chain (Photosynthetic reaction| center M subunit) Length = 306 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 224 PILLSSWPHAPPILHLAHMQGTFVLSADH 310 PIL+ SW APP +H+ T S DH Sbjct: 163 PILMGSWSVAPPYGIFSHLDWTNQFSLDH 191
>GPR78_HUMAN (Q96P69) Probable G-protein coupled receptor 78| Length = 363 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -3 Query: 395 CRMGQAVGISGASMSCSWQLVVIDGSCQCGLR 300 C GQ++ SGA++ CSW L C LR Sbjct: 129 CAWGQSLAFSGAALGCSW-LGYSSAFASCSLR 159
>MT10A_MYTED (P80246) Metallothionein 10-Ia (MT-10-Ia)| Length = 72 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%) Frame = -3 Query: 395 CRMGQAVGISGASMSCSWQLVV--IDGSCQCG 306 CR G A SGA CS VV G C+CG Sbjct: 23 CRCGDACKCSGADCKCSGCKVVCKCSGRCECG 54
>MATK_LEPPR (Q8MEX8) Maturase K (Intron maturase)| Length = 514 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Frame = +1 Query: 196 HPLQNVAEATDPSFILATCTTNSSSCPHARDICAVRRPH*QEPSITTSCHEQLI-EAPEI 372 HPL+ E T I + PH+ I +R PH P I + I +AP + Sbjct: 115 HPLEEXNEWTSFRSIHSIFPLMEDKIPHSNFILDIRIPHLTHPEILVRTFRRWIQDAPSL 174 Query: 373 PTACPILH 396 + +LH Sbjct: 175 HSLRSVLH 182
>YAB9_SCHPO (Q09809) Hypothetical protein C2G11.09 in chromosome I| Length = 796 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/44 (29%), Positives = 25/44 (56%) Frame = +3 Query: 3 YISTIIYEYSTSTLHQAYDPRCLLNSSLQHAPNHYIETTYNNRI 134 ++ST+I+ T+ AY+ ++ SS+Q +YI T +N + Sbjct: 718 WLSTVIFPLLCFTVISAYNFSTMIRSSMQFVSLYYIRTHQSNTL 761
>AMT1_CAEEL (P54145) Putative ammonium transporter 1| Length = 534 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/34 (32%), Positives = 16/34 (47%) Frame = -1 Query: 346 HGSWWLLMVLVNVVCGQHKCPLHVGKMKNWWCMW 245 HG W LL+ + + G KM+ W C+W Sbjct: 288 HGKWTLLLTINACLSGMVAACAGCNKMEPWACIW 321
>GAP2_DROME (Q8T498) Probable Ras GTPase-activating protein| Length = 1556 Score = 28.1 bits (61), Expect = 5.3 Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 5/112 (4%) Frame = +3 Query: 45 HQAYDPRCLLNSSLQHAPNHYIETTYNNRI*T*PYGSHC*QHTVFSITMVSSATERSRSH 224 H + + L NS A N Y+ + P G QH +M SS+ S S+ Sbjct: 864 HHQHPLQMLSNSQTSIAGNQYMSS---------PGGL---QHAQSQTSMASSSLNGSSSN 911 Query: 225 RSFFHLGHMHHQFFILPTCKGHLC--CPQTTLTRT---INNHQLP*TAHRGS 365 H H HH + P H C PQT+ + T ++ P +H G+ Sbjct: 912 LLHGHQQHAHHPQQLHP----HHCPPAPQTSASSTMERMDRMNYPYMSHNGN 959
>NUDH_HAEDU (Q7VPB7) Probable (di)nucleoside polyphosphate hydrolase (EC| 3.6.1.-) Length = 197 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = -1 Query: 235 KKDRWLLLRSVADETIVMLKT 173 +K RW LL+ V+DE+ V LKT Sbjct: 96 QKQRWFLLQLVSDESAVNLKT 116
>MT10B_MYTED (O62554) Metallothionein 10-Ib (MT-10-Ib)| Length = 72 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%) Frame = -3 Query: 395 CRMGQAVGISGASMSCSWQLVV--IDGSCQCG 306 CR G A +GA CS VV G C+CG Sbjct: 23 CRCGDACKCAGADCKCSGCKVVCKCSGRCECG 54
>WOX1_ARATH (Q6X7K0) WUSCHEL-related homeobox 1 (PFS2-like protein)| Length = 350 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%) Frame = +2 Query: 215 QKPPILLSS-WPHAPP---ILHLAHMQGTFVLSADHIDK 319 Q PP+++SS W P +L + QGT SADHI + Sbjct: 67 QHPPVMVSSRWNPTPDQLRVLEELYRQGTRTPSADHIQQ 105
>YMV2_CAEEL (P34504) Hypothetical protein K04H4.2 precursor| Length = 967 Score = 27.7 bits (60), Expect = 6.9 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +3 Query: 276 TCKGHLCCPQTTLT 317 TC ++CCPQTT T Sbjct: 471 TCSNNVCCPQTTTT 484
>EDG5_MOUSE (P52592) Sphingosine 1-phosphate receptor Edg-5 (S1P receptor| Edg-5) (Lysophospholipid receptor B2) (Endothelial differentiation G-protein coupled receptor 5) (Sphingosine 1-phosphate receptor 2) (S1P2) Length = 352 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/57 (28%), Positives = 27/57 (47%) Frame = -2 Query: 177 RLYAASSGNRMVMFIFCCCMSSLYNDWVHVGGWSLINTLGHMPDVMCLLSTRI*LCL 7 +LY + RM+M I + SL + + GW+ +N L V+ L + LC+ Sbjct: 138 KLYGSDKSCRMLMLIGASWLISLILGGLPILGWNCLNQLEACSTVLPLYAKHYVLCV 194
>MT14_MYTED (P80249) Metallothionein 10-IV (MT-10-IV)| Length = 72 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 2/31 (6%) Frame = -3 Query: 395 CRMGQAVGISGASMSCSWQLVV--IDGSCQC 309 CR G A SGA CS VV GSC C Sbjct: 23 CRCGDACKCSGADCKCSGCKVVCKCSGSCAC 53
>MT13_MYTED (P80248) Metallothionein 10-III (MT-10-III)| Length = 72 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 2/31 (6%) Frame = -3 Query: 395 CRMGQAVGISGASMSCSWQLVV--IDGSCQC 309 CR G A SGA CS VV GSC C Sbjct: 23 CRCGDACKCSGADCKCSGCKVVCKCSGSCAC 53
>EFTS_SHIFL (P0A6P4) Elongation factor Ts (EF-Ts)| Length = 282 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -3 Query: 323 GSCQCGLRTAQMSLACGQDEELVVHVA 243 GS Q G R + A G DEELV H+A Sbjct: 143 GSYQHGARIGVLVAAKGADEELVKHIA 169
>EFTS_ECOLI (P0A6P1) Elongation factor Ts (EF-Ts)| Length = 282 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -3 Query: 323 GSCQCGLRTAQMSLACGQDEELVVHVA 243 GS Q G R + A G DEELV H+A Sbjct: 143 GSYQHGARIGVLVAAKGADEELVKHIA 169
>EFTS_ECOL6 (P0A6P2) Elongation factor Ts (EF-Ts)| Length = 282 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -3 Query: 323 GSCQCGLRTAQMSLACGQDEELVVHVA 243 GS Q G R + A G DEELV H+A Sbjct: 143 GSYQHGARIGVLVAAKGADEELVKHIA 169
>EFTS_ECO57 (P0A6P3) Elongation factor Ts (EF-Ts)| Length = 282 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -3 Query: 323 GSCQCGLRTAQMSLACGQDEELVVHVA 243 GS Q G R + A G DEELV H+A Sbjct: 143 GSYQHGARIGVLVAAKGADEELVKHIA 169
>META_BACSU (P54167) Homoserine O-succinyltransferase (EC 2.3.1.46) (Homoserine| O-transsuccinylase) (HTS) Length = 302 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/37 (37%), Positives = 17/37 (45%) Frame = +3 Query: 24 EYSTSTLHQAYDPRCLLNSSLQHAPNHYIETTYNNRI 134 EY T+TL Q Y+ N S AP HY N + Sbjct: 238 EYDTNTLLQEYERDLERNLSTVEAPKHYFAKGSNEPV 274
>CY43_TRYBB (Q99280) Receptor-type adenylate cyclase GRESAG 4.3 (EC 4.6.1.1)| (ATP pyrophosphate-lyase) (Adenylyl cyclase) Length = 1229 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +3 Query: 237 HLGHMHHQFFILPTCKGHLCCPQT 308 H G+M H +F+ P G CP T Sbjct: 158 HEGYMPHLYFLRPEATGESYCPST 181
>CK001_HUMAN (Q9H5F2) Protein C11orf1| Length = 150 Score = 27.3 bits (59), Expect = 9.0 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 3/113 (2%) Frame = +3 Query: 57 DPRCLLNSSLQHAPNH-YIETTYNNRI*T*PYGSHC*--QHTVFSITMVSSATERSRSHR 227 +P C SL +A H + T +NN YG C ++T + T++ + + R Sbjct: 25 NPHC---GSLVNADGHGEVWTDWNNMSKFFQYGWRCTTNENTYSNRTLMGNWNQERYDLR 81 Query: 228 SFFHLGHMHHQFFILPTCKGHLCCPQTTLTRTINNHQLP*TAHRGSRDPHCLP 386 + + QF GH +TT + NN ++P + HR R+PH P Sbjct: 82 NIVQPKPLPSQF-------GHYF--ETTYDTSYNN-KMPLSTHRFKREPHWFP 124 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,255,897 Number of Sequences: 219361 Number of extensions: 1305304 Number of successful extensions: 3239 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3149 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3232 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
