ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart61e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_475643.1| Oryza sativa (japonica cultivar-group), predic... 105 1e-19
2gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome... 105 1e-19
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
4dbj|AK071548.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
5dbj|AK061479.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
6gb|AY111838.1| Zea mays CL29063_1 mRNA sequence 70 6e-09
7gb|U97190.1| Caenorhabditis elegans cosmid B0025, complete sequence 42 1.3
8gb|AC157916.2| Mus musculus chromosome 19, clone RP24-330P23, co... 42 1.3
9gb|AC137148.14| Mus musculus chromosome 19, clone RP24-210C4, co... 42 1.3
10emb|AL844900.3| Mouse DNA sequence from clone RP23-301L16 on chr... 42 1.3
11gb|BT017746.1| Zea mays clone EL01N0449H05.c mRNA sequence 40 5.0
12emb|AL606464.11| Mouse DNA sequence from clone RP23-462P2 on chr... 40 5.0
13emb|AL845351.6| Zebrafish DNA sequence from clone DKEYP-44A9 in ... 40 5.0
14gb|AY104993.1| Zea mays PCO092577 mRNA sequence 40 5.0

>ref|XM_475643.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 777

 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                       
Query: 314 ctactgcctaggtctcttggagctgcagcttgggcatttgtactgctttatgctctccgc 373
           |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 777 ctactgtctaggtctcttggagctgcagctcgggcacttgtactgctttatgctctccgc 718

                
Query: 374 cttcg 378
           |||||
Sbjct: 717 cttcg 713



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>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0099P06, complete sequence
          Length = 135117

 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Plus

                                                                         
Query: 314   ctactgcctaggtctcttggagctgcagcttgggcatttgtactgctttatgctctccgc 373
             |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 60088 ctactgtctaggtctcttggagctgcagctcgggcacttgtactgctttatgctctccgc 60147

                  
Query: 374   cttcg 378
             |||||
Sbjct: 60148 cttcg 60152



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Plus

                                                                           
Query: 314     ctactgcctaggtctcttggagctgcagcttgggcatttgtactgctttatgctctccgc 373
               |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 3637741 ctactgtctaggtctcttggagctgcagctcgggcacttgtactgctttatgctctccgc 3637800

                    
Query: 374     cttcg 378
               |||||
Sbjct: 3637801 cttcg 3637805



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>dbj|AK071548.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104P18, full
           insert sequence
          Length = 1109

 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                       
Query: 314 ctactgcctaggtctcttggagctgcagcttgggcatttgtactgctttatgctctccgc 373
           |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 882 ctactgtctaggtctcttggagctgcagctcgggcacttgtactgctttatgctctccgc 823

                
Query: 374 cttcg 378
           |||||
Sbjct: 822 cttcg 818



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>dbj|AK061479.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-G07, full
           insert sequence
          Length = 1172

 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Minus

                                                                       
Query: 314 ctactgcctaggtctcttggagctgcagcttgggcatttgtactgctttatgctctccgc 373
           |||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 801 ctactgtctaggtctcttggagctgcagctcgggcacttgtactgctttatgctctccgc 742

                
Query: 374 cttcg 378
           |||||
Sbjct: 741 cttcg 737



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>gb|AY111838.1| Zea mays CL29063_1 mRNA sequence
          Length = 871

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 338 gcagcttgggcatttgtactgctttatgctctccgcctt 376
           |||||||||||| ||||||||||||||||||||||||||
Sbjct: 350 gcagcttgggcacttgtactgctttatgctctccgcctt 388



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>gb|U97190.1| Caenorhabditis elegans cosmid B0025, complete sequence
          Length = 17370

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 45    gttacacatattttcatcatt 65
             |||||||||||||||||||||
Sbjct: 14525 gttacacatattttcatcatt 14505



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>gb|AC157916.2| Mus musculus chromosome 19, clone RP24-330P23, complete sequence
          Length = 190666

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 60     atcattctactatcccttccc 80
              |||||||||||||||||||||
Sbjct: 177020 atcattctactatcccttccc 177000



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>gb|AC137148.14| Mus musculus chromosome 19, clone RP24-210C4, complete sequence
          Length = 168235

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 60     atcattctactatcccttccc 80
              |||||||||||||||||||||
Sbjct: 127619 atcattctactatcccttccc 127639



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>emb|AL844900.3| Mouse DNA sequence from clone RP23-301L16 on chromosome X, complete
             sequence
          Length = 183256

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 84    aacatacacctttgactcctc 104
             |||||||||||||||||||||
Sbjct: 75695 aacatacacctttgactcctc 75675



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>gb|BT017746.1| Zea mays clone EL01N0449H05.c mRNA sequence
          Length = 1198

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 329 cttggagctgcagcttgggcatttgtactgctttatgctctccgcctt 376
           ||||| ||||||||| || || ||||||||||| |||  |||||||||
Sbjct: 877 cttggtgctgcagctgggacacttgtactgcttgatgtgctccgcctt 830



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>emb|AL606464.11| Mouse DNA sequence from clone RP23-462P2 on chromosome 13 Contains the
             3' end of the Slc17a1 gene for solute carrier family 17
             vesicular glutamate transporter) member 1, the gene for a
             novel solute carrier family 17 (Slc17a) member, a U1 small
             nuclear ribonucleoprotein 1C (Snrp1c) pseudogene, a H2B
             histone family (H2b) pseudogene, the gene for a novel H2A
             histone family (H2a) member, a novel gene, the gene for
             the ortholog of human secretagogin, EF-hand calcium
             binding protein SCGN and the 3' end of a novel gene,
             complete sequence
          Length = 183698

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   agcattagcatcatcaccat 180
             ||||||||||||||||||||
Sbjct: 69494 agcattagcatcatcaccat 69475



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>emb|AL845351.6| Zebrafish DNA sequence from clone DKEYP-44A9 in linkage group 20,
              complete sequence
          Length = 160701

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     atgaaaagttacacatattt 57
              ||||||||||||||||||||
Sbjct: 152801 atgaaaagttacacatattt 152782



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>gb|AY104993.1| Zea mays PCO092577 mRNA sequence
          Length = 1146

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 329 cttggagctgcagcttgggcatttgtactgctttatgctctccgcctt 376
           ||||| ||||||||| || || ||||||||||| |||  |||||||||
Sbjct: 853 cttggtgctgcagctgggacacttgtactgcttgatgtgctccgcctt 806


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,142,644
Number of Sequences: 3902068
Number of extensions: 3142644
Number of successful extensions: 67006
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66968
Number of HSP's gapped (non-prelim): 38
length of query: 378
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 356
effective length of database: 17,147,199,772
effective search space: 6104403118832
effective search space used: 6104403118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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