Clone Name | rbart61e01 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_475643.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 777 Score = 105 bits (53), Expect = 1e-19 Identities = 62/65 (95%) Strand = Plus / Minus Query: 314 ctactgcctaggtctcttggagctgcagcttgggcatttgtactgctttatgctctccgc 373 |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 777 ctactgtctaggtctcttggagctgcagctcgggcacttgtactgctttatgctctccgc 718 Query: 374 cttcg 378 ||||| Sbjct: 717 cttcg 713
>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099P06, complete sequence Length = 135117 Score = 105 bits (53), Expect = 1e-19 Identities = 62/65 (95%) Strand = Plus / Plus Query: 314 ctactgcctaggtctcttggagctgcagcttgggcatttgtactgctttatgctctccgc 373 |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 60088 ctactgtctaggtctcttggagctgcagctcgggcacttgtactgctttatgctctccgc 60147 Query: 374 cttcg 378 ||||| Sbjct: 60148 cttcg 60152
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 105 bits (53), Expect = 1e-19 Identities = 62/65 (95%) Strand = Plus / Plus Query: 314 ctactgcctaggtctcttggagctgcagcttgggcatttgtactgctttatgctctccgc 373 |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 3637741 ctactgtctaggtctcttggagctgcagctcgggcacttgtactgctttatgctctccgc 3637800 Query: 374 cttcg 378 ||||| Sbjct: 3637801 cttcg 3637805
>dbj|AK071548.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104P18, full insert sequence Length = 1109 Score = 105 bits (53), Expect = 1e-19 Identities = 62/65 (95%) Strand = Plus / Minus Query: 314 ctactgcctaggtctcttggagctgcagcttgggcatttgtactgctttatgctctccgc 373 |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 882 ctactgtctaggtctcttggagctgcagctcgggcacttgtactgctttatgctctccgc 823 Query: 374 cttcg 378 ||||| Sbjct: 822 cttcg 818
>dbj|AK061479.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-G07, full insert sequence Length = 1172 Score = 105 bits (53), Expect = 1e-19 Identities = 62/65 (95%) Strand = Plus / Minus Query: 314 ctactgcctaggtctcttggagctgcagcttgggcatttgtactgctttatgctctccgc 373 |||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 801 ctactgtctaggtctcttggagctgcagctcgggcacttgtactgctttatgctctccgc 742 Query: 374 cttcg 378 ||||| Sbjct: 741 cttcg 737
>gb|AY111838.1| Zea mays CL29063_1 mRNA sequence Length = 871 Score = 69.9 bits (35), Expect = 6e-09 Identities = 38/39 (97%) Strand = Plus / Plus Query: 338 gcagcttgggcatttgtactgctttatgctctccgcctt 376 |||||||||||| |||||||||||||||||||||||||| Sbjct: 350 gcagcttgggcacttgtactgctttatgctctccgcctt 388
>gb|U97190.1| Caenorhabditis elegans cosmid B0025, complete sequence Length = 17370 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 45 gttacacatattttcatcatt 65 ||||||||||||||||||||| Sbjct: 14525 gttacacatattttcatcatt 14505
>gb|AC157916.2| Mus musculus chromosome 19, clone RP24-330P23, complete sequence Length = 190666 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 60 atcattctactatcccttccc 80 ||||||||||||||||||||| Sbjct: 177020 atcattctactatcccttccc 177000
>gb|AC137148.14| Mus musculus chromosome 19, clone RP24-210C4, complete sequence Length = 168235 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 atcattctactatcccttccc 80 ||||||||||||||||||||| Sbjct: 127619 atcattctactatcccttccc 127639
>emb|AL844900.3| Mouse DNA sequence from clone RP23-301L16 on chromosome X, complete sequence Length = 183256 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 84 aacatacacctttgactcctc 104 ||||||||||||||||||||| Sbjct: 75695 aacatacacctttgactcctc 75675
>gb|BT017746.1| Zea mays clone EL01N0449H05.c mRNA sequence Length = 1198 Score = 40.1 bits (20), Expect = 5.0 Identities = 41/48 (85%) Strand = Plus / Minus Query: 329 cttggagctgcagcttgggcatttgtactgctttatgctctccgcctt 376 ||||| ||||||||| || || ||||||||||| ||| ||||||||| Sbjct: 877 cttggtgctgcagctgggacacttgtactgcttgatgtgctccgcctt 830
>emb|AL606464.11| Mouse DNA sequence from clone RP23-462P2 on chromosome 13 Contains the 3' end of the Slc17a1 gene for solute carrier family 17 vesicular glutamate transporter) member 1, the gene for a novel solute carrier family 17 (Slc17a) member, a U1 small nuclear ribonucleoprotein 1C (Snrp1c) pseudogene, a H2B histone family (H2b) pseudogene, the gene for a novel H2A histone family (H2a) member, a novel gene, the gene for the ortholog of human secretagogin, EF-hand calcium binding protein SCGN and the 3' end of a novel gene, complete sequence Length = 183698 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 agcattagcatcatcaccat 180 |||||||||||||||||||| Sbjct: 69494 agcattagcatcatcaccat 69475
>emb|AL845351.6| Zebrafish DNA sequence from clone DKEYP-44A9 in linkage group 20, complete sequence Length = 160701 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 atgaaaagttacacatattt 57 |||||||||||||||||||| Sbjct: 152801 atgaaaagttacacatattt 152782
>gb|AY104993.1| Zea mays PCO092577 mRNA sequence Length = 1146 Score = 40.1 bits (20), Expect = 5.0 Identities = 41/48 (85%) Strand = Plus / Minus Query: 329 cttggagctgcagcttgggcatttgtactgctttatgctctccgcctt 376 ||||| ||||||||| || || ||||||||||| ||| ||||||||| Sbjct: 853 cttggtgctgcagctgggacacttgtactgcttgatgtgctccgcctt 806 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,142,644 Number of Sequences: 3902068 Number of extensions: 3142644 Number of successful extensions: 67006 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66968 Number of HSP's gapped (non-prelim): 38 length of query: 378 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 356 effective length of database: 17,147,199,772 effective search space: 6104403118832 effective search space used: 6104403118832 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)